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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009858 ID=TCONS_00009858|Name=TCONS_00009858|organism=Clytia hemisphaerica|type=transcript|length=1009bp
TCTAACCTTCTCCAACATACCAATGCACAAAAGCACGTTTAGCGTACATC
AAATCGAATTTATGATCAAGTCGAGCCCAAGCTTCAGCAATAGCAGTTGT
GTTGGACAACATGCAAACAGCTCTTTGGACTTTAGCAAGATCACCTCCTG
GTACTACAGTTGGTGGTTGGTAGTTGATTCCAATCTTGAATCCAGTTGGA
CACCAATCGACAAATTGGATGGTTCGCTTTGTTTTGATCTTGGCGATAGC
AGAATTGACATCCTTGGGGACAACATCTCCACGATATAACAAGCAACATG
ACATATATTTACCATGACGAGGATCACATTTGACCATTTGGTTAGCTGGT
TCGAAACAGGCAGTGGTGATTTCATCAACGCTTAGTTGTTCATGGTAAGC
CCTCTCAGCAGAAATGACTGGAGCATAAGTTGCCAAGGGGAAATGAATAC
GTGGGTATGGGACCAAATTAGTTTGGAACTCAGTTAAATCGACATTCAAA
GCACCATCGAATCGGAGAGAAGCAGTAATGGAGGAGACGATTTGGCCAAT
CAAACGGTTTAAATTGGTGTACGTCGGACGGTCAATAGACAAATTAGCAC
GACAGATATCGTAGATGGCCTCATTGTCAACCATGAAAGCACAATCGGTG
TGTTCCAAGGTTGTGTGTGTCGTTAAGATGGCATTATAAGGCTCGACAAC
TGCTGTAGAGACTTGTGGAGCAGGGTAAATGGCGAATtcgagttttgttt
ttttgccgtACTCGACAGAAAGACGTTCCATCAACAAGGAAGTGAATCCG
GATCCAGTTCCGCCACCGAAAGAGTGAAAGACTAAGAAACCTTGAAGACC
AGTACATTTATCAGCTGTTTTTCTGATTCGGTCAACCAAGACATCGATGA
GTTCTTTACCAACGGTGTAATGTCCTCTGGCGTAGTTATTAGCTGCGTCT
TCTTTTCCACTGATGAGCTGTTCCGGATGAAAAAGACGTCTGTATGTACC
ACTTCGGAC Run BLAST on NCBI transcript from alignment at sc0000099:431735..438312- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009858 ID=TCONS_00009858|Name=TCONS_00009858|organism=Clytia hemisphaerica|type=transcript|length=6578bp|location=Sequence derived from alignment at sc0000099:431735..438312- (Clytia hemisphaerica)
TCTAACCTTCTCCAACATACCAATGCACAAAAGCACGTTTAGCGTACATC
AAATCGAATTTATGATCAAGTCGAGCCCAGGCTTCAGCAATAGCAGTTGT
ATTGGACAACATGCAGACAGCTCTTTGGACTTTAGCAAGATCACCTCCTG
GTACAACAGTAGGTGGTTGGTAGTTGATTCCAACCTTGAATCCAGTTGGA
CACCAATCGACGAATTGGATACTTCGTTTTGTTTTGATGGTAGCAATGGC
AGAATTGACATCCTTGGGAACAACATCACCACGGTACAACATACAGCATG
CCATATATTTACCATGACGTGGATCACATTTAACCATTTGGTTGGATGGT
TCGAAACAGGAGTTGGTGATTTCGACAACGCTGAGTTGTTCATGGTAAGC
TTTCTCAGCAGAGATGACTGGAGCATAAGTTGCCAAGGGGAAATGAATAC
GTGGATATGGGACCAAGTTAGTTTGGAACTCAGTTAAATCGACATTCAAA
GCACCATCGAATCGGAGAGAAGCAGTAATGGAGGAGACGATTTGGCCAAT
CAAACGGTTTAAATTGGTGTACGTCGGACGGTCAATAGACAAATTAGCAC
GACAGATATCGTAGATGGCCTCATTGTCAACCATGAAAGCACAATCGGTG
TGCTCCAAGGTTGTGTGTGTCGTTAAGATGGCATTATAAGGCTCGACAAC
TGCTGTGGAAACTTGTGGAGCAGGGTAAATGGCGAATTCGAGTTTTGTTT
TTTTGCCGTACTCGACAGAAAGACGTTCCATCAACAAGGAAGTGAATCCG
GATCCAGTTCCGCCACCGAAAGAGTGAAAGACTAAGAAACCTTGAAGACC
AGTACATTTATCAGCTGTTTTTCTGATTCGGTCAACCAAGACATCGATNG
CGCTGATGAGTTGGTCCGGATGAAAAAGACGTCGGTATGTTCCACTGCGG
ACTTCATCTAGAAGAAGAAATTTGAATTTAGGATTATATTTTCAGCTTGA
ATATCTTCTTAATATCTTAAAATTGCAAGACTGGATAATTTACTTCAAAC
ATAACATGCAGAAACATGTTTGATGAATCCAATATTTCCCATCTATATGT
ATGGTGATTTATTGGGTAAATGTCACAGATTTGGTAAAGATAAAACATTT
TTTCAATAAAAGCTTTATTATTGATTCACTTTGAAATTACTTTGTGAAGG
GATGTGTACTCCACCAGAGGTTTAGGAAAAAAGAGTCTGAGCCACATTTT
TTTTCAATGAAAAAAACATTTTATGAAAAAGAAATTTAAAAATTCGATTC
AAGAATGCTTATTCAGGATAAATCAATTTCAATATATCCATTGATCTTAT
TTTCAAGATGGCTTCATCATAGTAACACGTAGCAACAGAAAAGGTAAACA
AACGTAGTGCACTTTTACAAAAAATTTATTATTTCCTTCTTCATTTTTCA
TCTTCACTTTCCAAACTTTTTTGAATTTTTTCTATTTCATAATATTCCAA
TCCTGATTATCTTTTTATCCAGCACAAACCACTTTTAATTCGAATTTTAT
TAAAAGCTACATGTAGCCTCTTTTGTATCTGCTAAGATATGTTGAGTGTA
TGTTCACATTAACCCACTCTAAAAACAAATCAAGACAAACTGCTTACCAA
CTACGGTGGGTTCCAGATCAATAAAAAGAGCTCTTGGGACGTGTTTGCCA
GAACTGGTTTCACTGAAAAAGGTGTTAAATGAATCGTCACCGCCTCCAAT
AGTTTTGTCTGAAGGCATTTGACCATCAGGTTGGATTCCATGCTCCAAAC
AGTACAATTCCCAACAAGCATTTCCCATTTGGACACCAGCTTGGCCAAGA
TGGATGGAGATACATTCACGCTAAAATATTAAGTGTAATATAAATAGAAA
CATTCCATTCCATTATTCTAAAGGAATAACAAGCTGTTTTTCGGTCTCAG
ATACGCTATAGTTTGAGTAACTTTAAGACCTATATTTTGAAAAGGTTGCA
GTTGCCACCTACTAAAGATACAATTTCAAGCTCTTTTCTGTCACGCTGGA
GTTTTGCTCCGTAAAAGGTTAAGATTCATCAGGCCTGGCGGAAGAACCGT
AAAGGTGGATTTTGAAAATCAAATGGCGCAAATGGGAGCAAAGAAATTTG
AGGGGTACCCACATTGAAATTCATTTGACCTTTAAGGATGATATTTGTTA
TTGTGATTTAGAAATATGGTAAAAATATAAAAACAATAAACAAACTTACC
ATTCTGAAAACTTTAAATTAACGGAAAAATTGAGAATAAGAAAAAATAAC
GGATAAAATGATTTGAACTTCGGCAAAATAAATAACGACCTTTCGCTTGA
AAGTTTCAAATCGATCTTAACTGAGACGTTTTCATTTTGTGTTCATTTGT
AGATTTCTCGACCCCCTGAACGTAACTAGATTATCATTGAAAATCGAATA
GACTTTGTAATTTCCAGGGGGTATGAATAGAAGTAGTAATTTTTCATGAC
TTTGACAGAAACCTGTATTAGCTTATTAATCTTTTATGAGGGTGACATTG
AATACTCTGTTTATTGAGTGAATTACATGTTGAATACCATATTCCTATCT
TAAGTTCAAAATAGAGACGCCTGGACAATATCTAAATTCAGCGTAACAAT
CACTTTGGTTTCTACAAATTCTTGTCCCCAATACACCCTTTTATGTAAGA
ACTAGTGAATTTTAATAAGGCTTGCCTTTTGGGACTCTAAGCTTAAAACT
TTTTTCTAGGTAATACTGAAGTATTTTAATACACTACTTTTGCTGATTCG
TCCCTTGGTTTACTTAAAATTCAACTATTCTAGTCTAAGCATTTCTTAAA
TTGTTCGTATTTGCACCCCTGTCTCAAAGCCCCGGTGAAACATCTCTCCC
CCATGGGAGAGATGGGATAAAAATCCTATTGTTTCTGTACAATACAAAGT
CTGTACAATAATCCGCAGTGTAGATGGTTTTTGAGTGCTAATTTTTCCAT
TGAATTTCAAATACTATAGTTTGAGTAAAAAAAACGAGTTTAAGTTAATT
TCATTAAATTTCAAAATAGGGATGAAAACAATTTTCCAGTTAAGCAGAAA
TTGCAGGGGGTATTTTTCCCAGGGACGAAATTTTAGCCAAATTTTCCAGT
AGGTAAGAGGTACCATCGGGTCTCTAACACAGGGCTTTATATTCTTTGGA
ATTTTGCCACCCTCAATCTATAAAACTATTCTTATATGAAAAAGGGTAAA
AGTTAAGTTTTTCCTCATATATCACCGCATATCACGCAATTTTTTGTCTT
CGATCACGATCACGCAAATCAGCAAAAATCTTTCAAAACACGATCACGTA
TTGTCCTCTGATCACACAATCACAAAAAAATTCCAAATCATGTAATCACG
GTAGAAAAAAGTCCTTATCGTGTCATCACGCATACCGCTTGGGAGGGGGC
TCTTCTATCACTAAATGGGATCCACCTACTTTCATGGTCAAAATCTATTG
AGAAGTAAGCTTATTTCCTTGTTTTTCGAAATTTGGAGTTCGGTTTTGGG
CCATCTCTTTAATTTAATCGGACATTTTAATTTGGCTCGGGTTTATAGAC
TTCCAGGCTATATTATGAGCCTTATTGGACCATTTTTGAACTCAGATCCG
ATCAGATCCTCAGATCCTTAAGTCTTAAGTCTAGCGTTAAAACTCTACCC
TTCCAACCTAATTTAGAGCACTTCTAAATCGATTAGGGCTATAAGATTTT
GTGGGAATTTCCCTTTTATTTTTTCTCAAATTTTACCATGATTGTAGCCT
CATACAAGTGAAGGTCATCCATAGTAACACTTTTAAAACATATTCAGCAT
TTGAGTGGAGAATACGTGCCACCCAACTCCGGCAAATTAAGCCACGTCCA
AATTTACCATAATTTTTTATCACCGTTTCCACTTGTCATAGCATATCACT
TCATACATCGAAAGAAGCCTATTGGAGTGTAGATCACTGGAATAGCTGTG
CCATAATTAATTTTTTCGCACAAAAAAAGATATTAGAAAAAAACAAAAAA
TGCTGACGTTAGCAAAACTTGTTTTTTGAATAACTCAAGTTTGGCTTATG
GTATATTCATGAAATTTGGACAAAAATTGCATATCAATAATAGGAACATT
TTTGCATAATTTTTTTTTGCAAATTTTGCTGACGTCAGCAGAAACCAGCA
AAATACAAAATTTTGCAATTACCTGCTGACGTCAGCAAAATTTCAAAAAT
TTTCTTTTTTAAAATGATCCTTTTAATGGTGTGCAACTTTGGTCCAAATT
TCATGTTTTTACCATAAGCCAAACTGGAGTTATTCAAAAAACAAGTTTTG
CTGACGTCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTATG
ATAAGTGGAAACGGTGACAAAAAATTGAGGTAAGTTTGAAAAATCTGGAC
AGGCCTTAATTTGCCTAAGAATTGATAATAATTTCCCACTTGTAAGTAGA
TACGAAAAACGTGCGTAGATATTTAACTTATTTGAACATTTAAAAATTTT
ACAAGCAAAATTAATGTGAACTTTGTTCCAGTGCATTATTTCGAATATTT
CTTATTTACATTGCGGTGCATCTAGCATTAACTCATTTCAATTTTCAGAT
AATAAATAATAAATTGTGTGTTTGAATATAAACAAAATCCGTCCAAGAGT
TTGTCCGAAATTTATTCATTGTGTCCGAAATTTGCTGACTTTGTCCGAAA
TTTAATATTCATCACCATCGTCTTCTTCTTCATCGGAATCTTGAGAATCC
AAACCGACTTCTTCGTAATCTTTCTCCAAAGCAGCCAAATCTTCACGAGC
CTCTGAAAATTCTCCTTCTTCCATACCTTAAAACAGAACAGGAAAATCAA
ACGTTAAAAATTAAGATCAGTGTATTATCTAACAACTTAATAAGCACCTT
GAATATTTGTTAGTATCCTGTAAAATATTTTTTTAAAGTTATTATTAAGC
ACTAAATATTGCTTTCCTTAAAAGTAGCATCTGAAAATGTGATGCTGTGA
GAGAAGAGAGAATGGGCCCTATCCCTGGATAAATAGGATAGGGGAATTAA
CACGCTTGCCAGACACTGCTAACCCTGAGTTATTGGTGTATGGACAAAGA
TACTCGAACTACACAGGAGAAAATTTGTATTCGCAGGTGTTGAACCTATG
AGTATCGTCACCACAACACATGTAATACCTGACATACTCCCCCATACTCT
TTTATCAGAGTGATGCTGTGGTCTCTATAAATATAGCATTCCAGCATGCA
TCAGAAACTAGAAAGTGAAATCGAAGTAAAGCATTGAAAATCTTCGCAAA
CAGAAGAAAAAAGTCTTAAACTAACCTTCTCCAACATACCAATGTACAAA
AGCACGTTTAGCGTACATCAAATCGAATTTATGATCAAGTCGAGCCCAAG
CTTCAGCAATAGCAGTTGTGTTGGACAACATGCAAACAGCTCTTTGGACT
TTAGCAAGATCACCTCCTGGTACTACAGTTGGTGGTTGGTAGTTGATTCC
AATCTTGAATCCAGTTGGACACCAATCGACAAATTGGATGGTTCGCTTTG
TTTTGATCTTGGCGATAGCAGAATTGACATCCTTGGGGACAACATCTCCA
CGATATAACAAGCAACATGACATATATTTACCATGACGAGGATCACATTT
GACCATTTGGTTAGCTGGTTCGAAACAGGCAGTGGTGATTTCATCAACGC
TTAGTTGTTCATGGTAAGCCCTCTCAGCAGAAATGACTGGAGCATAAGTT
GCCAAGGGGAAATGAATACGTGGGTATGGGACCAAATTAGTTTGGAACTC
AGTTAAATCGACATTCAAAGCACCATCGAATCGGAGAGAAGCAGTAATGG
AGGAGACGATTTGGCCAATCAAACGGTTTAAATTGGTGTACGTCGGACGG
TCAATAGACAAATTAGCACGACAGATATCGTAGATGGCCTCATTGTCAAC
CATGAAAGCACAATCGGTGTGTTCCAAGGTTGTGTGTGTCGTTAAGATGG
CATTATAAGGCTCGACAACTGCTGTAGAGACTTGTGGAGCAGGGTAAATG
GCGAATTCGAGTTTTGTTTTTTTGCCGTACTCGACAGAAAGACGTTCCAT
CAACAAGGAAGTGAATCCGGATCCAGTTCCGCCACCGAAAGAGTGAAAGA
CTAAGAAACCTTGAAGACCAGTACATTTATCAGCTGTTTTTCTGATTCGG
TCAACCAAGACATCGATGAGTTCTTTACCAACGGTGTAATGTCCTCTGGC
GTAGTTATTAGCTGCGTCTTCTTTTCCACTGATGAGCTGTTCCGGATGAA
AAAGACGTCTGTATGTACCACTTCGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009858-exon-sc0000099-1575043694:438266..438312 | TCONS_00009858-exon-sc0000099-1575043694:438266..438312 | Clytia hemisphaerica | exon |
| TCONS_00009858-exon-sc0000099-1575043694:431735..432696 | TCONS_00009858-exon-sc0000099-1575043694:431735..432696 | Clytia hemisphaerica | exon |
| TCONS_00009858-exon-sc0000099-1510915933:438266..438312 | TCONS_00009858-exon-sc0000099-1510915933:438266..438312 | Clytia hemisphaerica | exon |
| TCONS_00009858-exon-sc0000099-1510915933:431735..432696 | TCONS_00009858-exon-sc0000099-1510915933:431735..432696 | Clytia hemisphaerica | exon |
| TCONS_00009858-exon-sc0000099-1491911889:438266..438312 | TCONS_00009858-exon-sc0000099-1491911889:438266..438312 | Clytia hemisphaerica | exon |
| TCONS_00009858-exon-sc0000099-1491911889:431735..432696 | TCONS_00009858-exon-sc0000099-1491911889:431735..432696 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000099 | supercontig | sc0000099:431735..438312 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007017 | microtubule-based process |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005874 | microtubule |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
| GO:0005200 | structural constituent of cytoskeleton |
| GO:0003924 | GTPase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007017 |
microtubule-based process |
| cellular_component |
GO:0005874 |
microtubule |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
| molecular_function |
GO:0005200 |
structural constituent of cytoskeleton |
Blast
BLAST of TCONS_00009858 vs. Swiss-Prot (Human)
Match: TBA1A (Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A PE=1 SV=1) HSP 1 Score: 638.262 bits (1645), Expect = 0.000e+0 Identity = 310/335 (92.54%), Postives = 329/335 (98.21%), Query Frame = -1
Query: 5 VRSGTYRRLFHPEQLISGKEDAANNYARGHYTVGKELIDVLVDRIRKTADKCTGLQGFLVFHXXXXXXXXXXXSLLMERLSVEYGKKTKLEFAIYPAPQVSTAVVEPYNAILTTHTTLEHTDCAFMVDNEAIYDICRANLSIDRPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAERAYHEQLSVDEITTACFEPANQMVKCDPRHGKYMSCCLLYRGDVVPKDVNSAIAKIKTKRTIQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 1009
VR+GTYR+LFHPEQLI+GKEDAANNYARGHYT+GKE+ID+++DRIRK AD+CTGLQGFLVFHSFGGGTGSGFTSLLMERLSV+YGKK+KLEF+IYPAPQVSTAVVEPYN+ILTTHTTLEH+DCAFMVDNEAIYDICR NL I+RPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAE+AYHEQLSV EIT ACFEPANQMVKCDPRHGKYM+CCLLYRGDVVPKDVN+AIA IKTKRTIQFVDWCPTGFK+GINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG
Sbjct: 78 VRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG 412
The following BLAST results are available for this feature:
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