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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009857 ID=TCONS_00009857|Name=TCONS_00009857|organism=Clytia hemisphaerica|type=transcript|length=381bp
CAACTACGGTGGGTTCCAGATCAATAAAAAGAGCTCTTGGGACGTGTTTG
CCAGAACTGGTTTCACTGAAAAAGGTGTTGAATGAATCGTCACCGCCTCC
AATAGTTTTGTCTGAAGGCATTTGACCATCAGGTTGGATTCCATGCTCTA
AACAATACAATTCCCAACAAGCATTTCCCATTTGGACGCCAGCTTGGCCG
AGATGGATGGAGATACATTCACGCTAAAATATTAAGagtaataatataat
aaaaagaTGTTTTTGTGTGTTAAAATTAAACCAGTAATACCTTAAACAcc
ataaacaataaaattcacCTGAAAAGGCCCATTTAGTCAcatgttctttt
tataagaacaaacttatataagaatataagg Run BLAST on NCBI transcript from alignment at sc0000099:429971..436665- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009857 ID=TCONS_00009857|Name=TCONS_00009857|organism=Clytia hemisphaerica|type=transcript|length=6695bp|location=Sequence derived from alignment at sc0000099:429971..436665- (Clytia hemisphaerica)
CAACTACGGTGGGTTCCAGATCAATAAAAAGAGCTCTTGGGACGTGTTTG
CCAGAACTGGTTTCACTGAAAAAGGTGTTAAATGAATCGTCACCGCCTCC
AATAGTTTTGTCTGAAGGCATTTGACCATCAGGTTGGATTCCATGCTCCA
AACAGTACAATTCCCAACAAGCATTTCCCATTTGGACACCAGCTTGGCCA
AGATGGATGGAGATACATTCACGCTAAAATATTAAGTGTAATATAAATAG
AAACATTCCATTCCATTATTCTAAAGGAATAACAAGCTGTTTTTCGGTCT
CAGATACGCTATAGTTTGAGTAACTTTAAGACCTATATTTTGAAAAGGTT
GCAGTTGCCACCTACTAAAGATACAATTTCAAGCTCTTTTCTGTCACGCT
GGAGTTTTGCTCCGTAAAAGGTTAAGATTCATCAGGCCTGGCGGAAGAAC
CGTAAAGGTGGATTTTGAAAATCAAATGGCGCAAATGGGAGCAAAGAAAT
TTGAGGGGTACCCACATTGAAATTCATTTGACCTTTAAGGATGATATTTG
TTATTGTGATTTAGAAATATGGTAAAAATATAAAAACAATAAACAAACTT
ACCATTCTGAAAACTTTAAATTAACGGAAAAATTGAGAATAAGAAAAAAT
AACGGATAAAATGATTTGAACTTCGGCAAAATAAATAACGACCTTTCGCT
TGAAAGTTTCAAATCGATCTTAACTGAGACGTTTTCATTTTGTGTTCATT
TGTAGATTTCTCGACCCCCTGAACGTAACTAGATTATCATTGAAAATCGA
ATAGACTTTGTAATTTCCAGGGGGTATGAATAGAAGTAGTAATTTTTCAT
GACTTTGACAGAAACCTGTATTAGCTTATTAATCTTTTATGAGGGTGACA
TTGAATACTCTGTTTATTGAGTGAATTACATGTTGAATACCATATTCCTA
TCTTAAGTTCAAAATAGAGACGCCTGGACAATATCTAAATTCAGCGTAAC
AATCACTTTGGTTTCTACAAATTCTTGTCCCCAATACACCCTTTTATGTA
AGAACTAGTGAATTTTAATAAGGCTTGCCTTTTGGGACTCTAAGCTTAAA
ACTTTTTTCTAGGTAATACTGAAGTATTTTAATACACTACTTTTGCTGAT
TCGTCCCTTGGTTTACTTAAAATTCAACTATTCTAGTCTAAGCATTTCTT
AAATTGTTCGTATTTGCACCCCTGTCTCAAAGCCCCGGTGAAACATCTCT
CCCCCATGGGAGAGATGGGATAAAAATCCTATTGTTTCTGTACAATACAA
AGTCTGTACAATAATCCGCAGTGTAGATGGTTTTTGAGTGCTAATTTTTC
CATTGAATTTCAAATACTATAGTTTGAGTAAAAAAAACGAGTTTAAGTTA
ATTTCATTAAATTTCAAAATAGGGATGAAAACAATTTTCCAGTTAAGCAG
AAATTGCAGGGGGTATTTTTCCCAGGGACGAAATTTTAGCCAAATTTTCC
AGTAGGTAAGAGGTACCATCGGGTCTCTAACACAGGGCTTTATATTCTTT
GGAATTTTGCCACCCTCAATCTATAAAACTATTCTTATATGAAAAAGGGT
AAAAGTTAAGTTTTTCCTCATATATCACCGCATATCACGCAATTTTTTGT
CTTCGATCACGATCACGCAAATCAGCAAAAATCTTTCAAAACACGATCAC
GTATTGTCCTCTGATCACACAATCACAAAAAAATTCCAAATCATGTAATC
ACGGTAGAAAAAAGTCCTTATCGTGTCATCACGCATACCGCTTGGGAGGG
GGCTCTTCTATCACTAAATGGGATCCACCTACTTTCATGGTCAAAATCTA
TTGAGAAGTAAGCTTATTTCCTTGTTTTTCGAAATTTGGAGTTCGGTTTT
GGGCCATCTCTTTAATTTAATCGGACATTTTAATTTGGCTCGGGTTTATA
GACTTCCAGGCTATATTATGAGCCTTATTGGACCATTTTTGAACTCAGAT
CCGATCAGATCCTCAGATCCTTAAGTCTTAAGTCTAGCGTTAAAACTCTA
CCCTTCCAACCTAATTTAGAGCACTTCTAAATCGATTAGGGCTATAAGAT
TTTGTGGGAATTTCCCTTTTATTTTTTCTCAAATTTTACCATGATTGTAG
CCTCATACAAGTGAAGGTCATCCATAGTAACACTTTTAAAACATATTCAG
CATTTGAGTGGAGAATACGTGCCACCCAACTCCGGCAAATTAAGCCACGT
CCAAATTTACCATAATTTTTTATCACCGTTTCCACTTGTCATAGCATATC
ACTTCATACATCGAAAGAAGCCTATTGGAGTGTAGATCACTGGAATAGCT
GTGCCATAATTAATTTTTTCGCACAAAAAAAGATATTAGAAAAAAACAAA
AAATGCTGACGTTAGCAAAACTTGTTTTTTGAATAACTCAAGTTTGGCTT
ATGGTATATTCATGAAATTTGGACAAAAATTGCATATCAATAATAGGAAC
ATTTTTGCATAATTTTTTTTTGCAAATTTTGCTGACGTCAGCAGAAACCA
GCAAAATACAAAATTTTGCAATTACCTGCTGACGTCAGCAAAATTTCAAA
AATTTTCTTTTTTAAAATGATCCTTTTAATGGTGTGCAACTTTGGTCCAA
ATTTCATGTTTTTACCATAAGCCAAACTGGAGTTATTCAAAAAACAAGTT
TTGCTGACGTCAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCT
ATGATAAGTGGAAACGGTGACAAAAAATTGAGGTAAGTTTGAAAAATCTG
GACAGGCCTTAATTTGCCTAAGAATTGATAATAATTTCCCACTTGTAAGT
AGATACGAAAAACGTGCGTAGATATTTAACTTATTTGAACATTTAAAAAT
TTTACAAGCAAAATTAATGTGAACTTTGTTCCAGTGCATTATTTCGAATA
TTTCTTATTTACATTGCGGTGCATCTAGCATTAACTCATTTCAATTTTCA
GATAATAAATAATAAATTGTGTGTTTGAATATAAACAAAATCCGTCCAAG
AGTTTGTCCGAAATTTATTCATTGTGTCCGAAATTTGCTGACTTTGTCCG
AAATTTAATATTCATCACCATCGTCTTCTTCTTCATCGGAATCTTGAGAA
TCCAAACCGACTTCTTCGTAATCTTTCTCCAAAGCAGCCAAATCTTCACG
AGCCTCTGAAAATTCTCCTTCTTCCATACCTTAAAACAGAACAGGAAAAT
CAAACGTTAAAAATTAAGATCAGTGTATTATCTAACAACTTAATAAGCAC
CTTGAATATTTGTTAGTATCCTGTAAAATATTTTTTTAAAGTTATTATTA
AGCACTAAATATTGCTTTCCTTAAAAGTAGCATCTGAAAATGTGATGCTG
TGAGAGAAGAGAGAATGGGCCCTATCCCTGGATAAATAGGATAGGGGAAT
TAACACGCTTGCCAGACACTGCTAACCCTGAGTTATTGGTGTATGGACAA
AGATACTCGAACTACACAGGAGAAAATTTGTATTCGCAGGTGTTGAACCT
ATGAGTATCGTCACCACAACACATGTAATACCTGACATACTCCCCCATAC
TCTTTTATCAGAGTGATGCTGTGGTCTCTATAAATATAGCATTCCAGCAT
GCATCAGAAACTAGAAAGTGAAATCGAAGTAAAGCATTGAAAATCTTCGC
AAACAGAAGAAAAAAGTCTTAAACTAACCTTCTCCAACATACCAATGTAC
AAAAGCACGTTTAGCGTACATCAAATCGAATTTATGATCAAGTCGAGCCC
AAGCTTCAGCAATAGCAGTTGTGTTGGACAACATGCAAACAGCTCTTTGG
ACTTTAGCAAGATCACCTCCTGGTACTACAGTTGGTGGTTGGTAGTTGAT
TCCAATCTTGAATCCAGTTGGACACCAATCGACAAATTGGATGGTTCGCT
TTGTTTTGATCTTGGCGATAGCAGAATTGACATCCTTGGGGACAACATCT
CCACGATATAACAAGCAACATGACATATATTTACCATGACGAGGATCACA
TTTGACCATTTGGTTAGCTGGTTCGAAACAGGCAGTGGTGATTTCATCAA
CGCTTAGTTGTTCATGGTAAGCCCTCTCAGCAGAAATGACTGGAGCATAA
GTTGCCAAGGGGAAATGAATACGTGGGTATGGGACCAAATTAGTTTGGAA
CTCAGTTAAATCGACATTCAAAGCACCATCGAATCGGAGAGAAGCAGTAA
TGGAGGAGACGATTTGGCCAATCAAACGGTTTAAATTGGTGTACGTCGGA
CGGTCAATAGACAAATTAGCACGACAGATATCGTAGATGGCCTCATTGTC
AACCATGAAAGCACAATCGGTGTGTTCCAAGGTTGTGTGTGTCGTTAAGA
TGGCATTATAAGGCTCGACAACTGCTGTAGAGACTTGTGGAGCAGGGTAA
ATGGCGAATTCGAGTTTTGTTTTTTTGCCGTACTCGACAGAAAGACGTTC
CATCAACAAGGAAGTGAATCCGGATCCAGTTCCGCCACCGAAAGAGTGAA
AGACTAAGAAACCTTGAAGACCAGTACATTTATCAGCTGTTTTTCTGATT
CGGTCAACCAAGACATCGATGAGTTCTTTACCAACGGTGTAATGTCCTCT
GGCGTAGTTATTAGCTGCGTCTTCTTTTCCACTGATGAGCTGTTCCGGAT
GAAAAAGACGTCTGTATGTACCACTTCGGACTTCATCTGAAAAAATAAAG
ATTTTCAAAATGTTTTTTTTTTTGAAAATGAAAATCTTGTTCTACATCCC
CAAAATTCAAGGCCTAAATCAACTTCCACATCCTTAAGCGTAACATTTAG
GCTGGAAAACACTTTCTGCATCCTTAACATTTAGGACGGGGATCACTTCT
CCACATCCTTAACATTCAAAAAGGAAATCATCTTCCACATCCGTAACATT
CAACATTGAAAACACTTCCCACGTCCCTAGCATTCAACTCAAGACGAAAG
TCAACCTTCCACATCGTTAACATTCAGCTACCACATCCTCAACATTCAAA
AAAGAAATCATTTGAAAGAAAGGTTTTGTTTTTAAATAAGAATGATATCG
TTTGCTTACTCATTAATTTTAATTCACAAGCTTTTTCAAATTGAATTGAC
ACTGATGTGGAGCAAGATTGGTCAAAAATAGGAAAAGAAAAACATTTTTT
TTGTTGATATCAGCATAATATAACAATAGGCAGACACTGCCCTAATATGA
AATGTGTCTGATATGAAAGGGAACACTTATGTAAAAATAAAACCTTTAAA
ATTCAACACAGAAATAGCTTTCAACATCCTTAACATTCAAGACAGAAATC
TCTCCTCAATAATGAATAGTTTTTTACACTTTATTCGATACATTCTGAAA
ATATCAATTCAAGATTGCTTATTCAGAATTCTTTTATTCAAATACCTATT
GATCTGGTTCGATAGCAACAAATAACAACTGATAAAGCAAAACAAAAAAA
AATTCAATGTTTCGGAAGGATATTTCCCCCGGGGGGGGGGGGGNAAAACG
TGTATACATCCATTTGCTATGTACCAGAGAAATGATAGTATTACTCATAA
AGATCTAAGTATTTTAAGATTTTGTGATTTTAGCTGGGTTTTATGACTAA
TGTTGACAATAAAGTCATAAAACCTGGGTGGAGGTACTAGGGTTGCGAGC
TGACAGGGGGGGGGGTACCACCCAACTTCCGACCCTCGGACCCTTACCAG
GACTAAAAAGAAGAAAACAAAGGAAAATTTTGTGAATTTTACGACCCTTA
CCGGGACAAATTTGACAAATTTTGACCAAATTTCGATCTTTCTGGGGTAA
AAAGTTGAAATTTTCCTACTTCTTCTACCCGTAGTGGGACTGAAATTGAT
TTTCTAATTTTTTGACCCTTAGCGGGACTTTGGAAATCCAAAAAAGGTAC
CCCTTAAGGGCGGCACATACCATACCCTCCATTTGCCTAAGTACCCCCCC
CCCGGATATTTTCTCAATTAATTTCCCAAAATCTTTACGAAGTCTTTACA
TTATTTTTCAACGTTGTAAATCATATTGCAATTTTTTGTGAATTTATTAT
ATAAAAGGACTTACCAACTACTGTGGGTTCCAGATCAATAAAAAGAGCTC
TTGGGACGTGTTTGCCAGAACTGGTTTCACTAAAAAAGGTGTTGAATGAA
TCGTCACCGCCTCCAATAGTTTTGTCTGAAGGCATTTGACCATCAGGTTG
GATTCCATGCTCTAAACAATACAATTCCCAACAAGCATTTCCCATTTGGA
CGCCAGCTTGGCCGAGATGGATGGAGATACATTCACGCTAAAATATTAAG
AGTAATAATATAATAAAAAGATGTTTTTGTGTGTTAAAATTAAACCAGTA
ATACCTTAAACACCATAAACAATAAAATTCACCTGAAAAGGCCCATTTAG
TCACATGTTCTTTTTATAAGAACAAACTTATATAAGAATATAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009857-exon-sc0000099-1575043694:436592..436665 | TCONS_00009857-exon-sc0000099-1575043694:436592..436665 | Clytia hemisphaerica | exon |
| TCONS_00009857-exon-sc0000099-1575043694:429971..430277 | TCONS_00009857-exon-sc0000099-1575043694:429971..430277 | Clytia hemisphaerica | exon |
| TCONS_00009857-exon-sc0000099-1510915933:436592..436665 | TCONS_00009857-exon-sc0000099-1510915933:436592..436665 | Clytia hemisphaerica | exon |
| TCONS_00009857-exon-sc0000099-1510915933:429971..430277 | TCONS_00009857-exon-sc0000099-1510915933:429971..430277 | Clytia hemisphaerica | exon |
| TCONS_00009857-exon-sc0000099-1491911889:436592..436665 | TCONS_00009857-exon-sc0000099-1491911889:436592..436665 | Clytia hemisphaerica | exon |
| TCONS_00009857-exon-sc0000099-1491911889:429971..430277 | TCONS_00009857-exon-sc0000099-1491911889:429971..430277 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000099 | supercontig | sc0000099:429971..436665 - |
Blast
BLAST of TCONS_00009857 vs. Swiss-Prot (Human)
Match: TBA3C (Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3) HSP 1 Score: 154.066 bits (388), Expect = 5.825e-45 Identity = 68/74 (91.89%), Postives = 73/74 (98.65%), Query Frame = -3
Query: 2 RECISIHLGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETSSGKHVPRALFIDLEPTVV 223
RECISIH+GQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSET +GKHVPRA+F+DLEPTVV
Sbjct: 2 RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVV 75
The following BLAST results are available for this feature:
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