TCONS_00009844 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00009844
Unique Name	TCONS_00009844
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1738

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000099:245378..247115-

transcript sequence

>TCONS_00009844 ID=TCONS_00009844|Name=TCONS_00009844|organism=Clytia hemisphaerica|type=transcript|length=1738bp
AGGAATCTTCGGAACCTTCAACCGTGAATCATACGATGACTTAAAACTCC
CAACTGGAAAACTCACCAACAATGTCTATGAATTCTTGAACAAATACGAA
CTCTCCGGTAAGAAACAATGCCAACTCAAACCAGTCAAAGCCACCAAGAA
GACATGCAATAACCCACCATCATACAGATGTCAAAAACTCTTCAACGAAG
CTTCATCACCACTAGCTCAATATTTTGATATCGTTGATCCAGAACCATTC
TGGGATGCCTGTATCGCTGATACTCGATCCTGCGATGGCAAAAAACCATC
ATATGATGCCTACTGCAAATCAGTTGCTGCTTTCGTTTCTATTGGACGCT
CTATGGGACAATGGATTGAATTCCCAGAATCCTGTGGTAAGTTTTCTACC
ATTATCCCATAATCTTTTGCCAATATCAGTTTTGATCGTGCCTTTGATCA
AACCATGTAAACTTGTCCATTTTTGAAAACCATAGAACTTTAAGATTTTA
CTTTTGCTCCGTAAGACGTTATTTCGTATCAATCACACCTAATAGTTTTG
CTCTAAAAATAACATTAGGTTTTCATTTCAAGTATTTAAGTATTAAAAGG
ACTCAGATTTtttaccagaaaaataatcaacattttattttcatttctgt
aGTCAAATACGAGAACTACCGTATCGGAGAAGAATTCAAACAAAAGCCAT
CCAAGAAACAAATGGATGTTGTTGTCTTAGTATCTCAACAAGAATCTCAA
CGCCAATACATGGATAAATCTGTCAACGAATTCTTCAAATTGCTCAACAG
AATGCTGAACAAACGCAACAAATTGAATGTCAAATATGCTGTTGTTGGAT
TCGGAGGTGCTGGAATCCAAGAGGAAGCTCATGTTAAGTCATTCAACAAG
CACGCTTTCAACAGATTGCCAGAAGCTTTGAAGATCATCAAAACCATGAA
ATTCAATGGTGCTGAAGAAAACTCCAATGATGCTTTCATGGCAATCTCTG
AAGCCGCTCAATTACCATTCCGTGCTGGAGCATCCAAAATGTTCATCCTC
TTTAACGCCCAAAAACACTCCGCCCACCAACTTGGATCCACCCTTGATGA
AGCTAGATACGCCCTTGCTAAAGAGTTAGATGCTTCATTGGTCACTTTCG
AATCTGTTGACTTCAAGAACCGTAAAGCTTTCGGACAATCTAACCGTAAA
CTCTACACCAACAAGAAATCCATCAATGGAAAATTTACATCCCCAAACTC
TGAATACACCAAATTGGTTGAAGAATCGAATGGAGGACACTTCAAAAAGG
ACATCCGTAACATCAAACAAGCTGCCAATGCTGTCCACGATATTGCCAAA
AATACCGTCAAACGAAATAACCAAAAATGCCGACTCTGCAAAGTCGTTGC
GTCGTGGGATCAAAGCGCCAAGACCATTTGCCAACCCATCAAATGCTAAA
TCCTCTACTTGACGATGTTATAAAAAATGGACTCTCccctttttttgttt
atttttttattttcgtaaaCATGGCTTTTTtataatataattattttttt
ttagttttgttttttttacgcCAGGTTGtaattggcaaaattttttgttt
aaaataatcTTTCATTTTCTGTTGTGTCatagttttaaaagaaaaaataa
tgtattttttttcgtttattatttttgttaacaatttcatttgaaaaaaa
ttcaataaaaatttattttactgaAGTGACTATAAAAC

Run BLAST on NCBI

transcript from alignment at sc0000099:245378..247115-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00009844 ID=TCONS_00009844|Name=TCONS_00009844|organism=Clytia hemisphaerica|type=transcript|length=1738bp|location=Sequence derived from alignment at sc0000099:245378..247115- (Clytia hemisphaerica)
AGGAATCTTCGGAACCTTCAACCGTGAATCATACGATGACTTAAAACTCC
CAACTGGAAAACTCACCAACAATGTCTATGAATTCTTGAACAAATACGAA
CTCTCCGGTAAGAAACAATGCCAACTCAAACCAGTCAAAGCCACCAAGAA
GACATGCAATAACCCACCATCATACAGATGTCAAAAACTCTTCAACGAAG
CTTCATCACCACTAGCTCAATATTTTGATATCGTTGATCCAGAACCATTC
TGGGATGCCTGTATCGCTGATACTCGATCCTGCGATGGCAAAAAACCATC
ATATGATGCCTACTGCAAATCAGTTGCTGCTTTCGTTTCTATTGGACGCT
CTATGGGACAATGGATTGAATTCCCAGAATCCTGTGGTAAGTTTTCTACC
ATTATCCCATAATCTTTTGCCAATATCAGTTTTGATCGTGCCTTTGATCA
AACCATGTAAACTTGTCCATTTTTGAAAACCATAGAACTTTAAGATTTTA
CTTTTGCTCCGTAAGACGTTATTTCGTATCAATCACACCTAATAGTTTTG
CTCTAAAAATAACATTAGGTTTTCATTTCAAGTATTTAAGTATTAAAAGG
ACTCAGATTTTTTACCAGAAAAATAATCAACATTTTATTTTCATTTCTGT
AGTCAAATACGAGAACTACCGTATCGGAGAAGAATTCAAACAAAAGCCAT
CCAAGAAACAAATGGATGTTGTTGTCTTAGTATCTCAACAAGAATCTCAA
CGCCAATACATGGATAAATCTGTCAACGAATTCTTCAAATTGCTCAACAG
AATGCTGAACAAACGCAACAAATTGAATGTCAAATATGCTGTTGTTGGAT
TCGGAGGTGCTGGAATCCAAGAGGAAGCTCATGTTAAGTCATTCAACAAG
CACGCTTTCAACAGATTGCCAGAAGCTTTGAAGATCATCAAAACCATGAA
ATTCAATGGTGCTGAAGAAAACTCCAATGATGCTTTCATGGCAATCTCTG
AAGCCGCTCAATTACCATTCCGTGCTGGAGCATCCAAAATGTTCATCCTC
TTTAACGCCCAAAAACACTCCGCCCACCAACTTGGATCCACCCTTGATGA
AGCTAGATACGCCCTTGCTAAAGAGTTAGATGCTTCATTGGTCACTTTCG
AATCTGTTGACTTCAAGAACCGTAAAGCTTTCGGACAATCTAACCGTAAA
CTCTACACCAACAAGAAATCCATCAATGGAAAATTTACATCCCCAAACTC
TGAATACACCAAATTGGTTGAAGAATCGAATGGAGGACACTTCAAAAAGG
ACATCCGTAACATCAAACAAGCTGCCAATGCTGTCCACGATATTGCCAAA
AATACCGTCAAACGAAATAACCAAAAATGCCGACTCTGCAAAGTCGTTGC
GTCGTGGGATCAAAGCGCCAAGACCATTTGCCAACCCATCAAATGCTAAA
TCCTCTACTTGACGATGTTATAAAAAATGGACTCTCCCCTTTTTTTGTTT
ATTTTTTTATTTTCGTAAACATGGCTTTTTTATAATATAATTATTTTTTT
TTAGTTTTGTTTTTTTTACGCCAGGTTGTAATTGGCAAAATTTTTTGTTT
AAAATAATCTTTCATTTTCTGTTGTGTCATAGTTTTAAAAGAAAAAATAA
TGTATTTTTTTTCGTTTATTATTTTTGTTAACAATTTCATTTGAAAAAAA
TTCAATAAAAATTTATTTTACTGAAGTGACTATAAAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005505	XLOC_005505	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00009844-exon-sc0000099-1575043694:245378..247115	TCONS_00009844-exon-sc0000099-1575043694:245378..247115	Clytia hemisphaerica	exon
TCONS_00009844-exon-sc0000099-1510915933:245378..247115	TCONS_00009844-exon-sc0000099-1510915933:245378..247115	Clytia hemisphaerica	exon
TCONS_00009844-exon-sc0000099-1491911889:245378..247115	TCONS_00009844-exon-sc0000099-1491911889:245378..247115	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000099	supercontig	sc0000099:245378..247115 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.885971	1.21206	3.73537	2.93315	0	0.0336732	2.88256	4.30687	16.1635	27.6551	50.8867	18.2768	54.1449	75.507	104.52	114.75	167.836	182.249	171.064	108.922	218.319	194.139	740.726	777.744	316.126	292.605	1400.37	2185.51	2942.31	2401.12

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00009844 vs. Swiss-Prot (Human)

BLAST of TCONS_00009844 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00009844 (transcript) - C. hemisphaerica