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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009834 ID=TCONS_00009834|Name=TCONS_00009834|organism=Clytia hemisphaerica|type=transcript|length=826bp
AAATTTAGTTAGTTCCCTGAAGGTTATTCCATAGTTCCCTGAAGGTTATt
ctcaaaatttgatttctttttctttcactttttatttAGATGGAAAGCTG
ATGCATCTGATGAGCAacttaaataaaatttttggaaagctcaagAAAAA
GAGTGTAAAGACTCAGCAAATCTTTGTTGAACTTGCTGACAATGAAGATC
CCGAGGAAAAAATGTCAACGTGCAAAATCTCAACTTCGTGTCCCATCCTT
CTCatagagaaaaataaaattcatcttCTACTTCACAAGAAATTGTTGTT
CAGCACTGAACGTAAATGCATTATTGAAGCCTTTGTCGCGTATATCGCGT
CTTACTATCTGGTCAACATGGGTTACCCATTATCTTTGGAAATTGGCTTG
TCAGTCCTACAACTCATCCTTTTCAAAGATGATAACATCAGGAGCGAAAT
AAAGGAGGACGTGCTCAAAATCCACAAAGAGtaccaaaaattttgaacag
ACTACTTTAGGCTTCAGGTATTATGTATTTTAAACCTTTTTGATACTTAA
GCCCCTGCACTATTAGTTTTTGGTTAGGTTAGGTTACTATACCGTATTTC
TTCTAATAAGCGCCGCGgcgcttattaaattttcttgatttaagGTGCGG
CGCTTATTAGAGGGCGGCGCTTATATCGAAATTTAGATTTAAGGTGCGGC
GCTTATTGGAGGAAATACGGTACtctatttttggacctacctggaggtcc
tataaattaacctttgtccgtccgtccgttcgttcgttaccagcttttct
cgagattggctcatttgTTTTTTTNN Run BLAST on NCBI protein sequence of TCONS_00009834-protein >TCONS_00009834-protein ID=TCONS_00009834-protein|Name=TCONS_00009834-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MHLMSNLNKIFGKLKKKSVKTQQIFVELADNEDPEEKMSTCKISTSCPIL
LIEKNKIHLLLHKKLLFSTERKCIIEAFVAYIASYYLVNMGYPLSLEIGL
SVLQLILFKDDNIRSEIKEDVLKIHKEYQKF Run BLAST on NCBI transcript from alignment at sc0000099:32242..35217- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009834 ID=TCONS_00009834|Name=TCONS_00009834|organism=Clytia hemisphaerica|type=transcript|length=2976bp|location=Sequence derived from alignment at sc0000099:32242..35217- (Clytia hemisphaerica)
AAATTTAGTTAGTTCCCTGAAGGTTATTCCATAGTTCCCTGAAGGTTATT
CTCAAAATTTGATTTCTTTTTCTTTCACTTTTTATTTAGATGGAAAGCTG
ATGCATCTGATGAGCAACTTAAATAAAATTTTTGGAAAGCTCAAGAAAAA
GAGTGTAAAGACTCAGCAAATCTTTGTTGAACTTGCTGTAAGTTGAAATA
ATTTTTTTAATTTAGTTTTTTAATGGTCAAAGTGAATGATATTAATTCAT
TAACTTGTCAAGTTGGATCATTAACGATTGGACCTAACGATTTTTTTTTG
ATTGTCGATGATGGATGCATTTTTGGACCTAATTCATGTTATAGCATATC
AAATATTGATTATAAGTCAAGTGCTGGTTTTTTTCGGAATTCCTGAGATA
AAAATCTTTCATTTAAGAGTCATTTGTCTGTAAGAATCGGCAGTTTCTAG
AAATATAGGAAGTGATGTCCTCAGGTTTTCCTCAAATTCAAACCATTGAA
AGATACCTTAAGTGTATTAATTTTGGCAGGGATTAAATTTGGTTTTTGGT
AAAATACACCAAATTAAATACCCGCCAAAATTTTGAAAATTCACCGTCCG
CCAAATTAAATACCCGCCAAAATTAACAAAGTCCTTTTAGGATAGAAATT
CTATCAAAAATCAGCATTTTTTAGTTGAAAACATTAAAATTTTTGATCTA
CAAGCCCCCAAAATTTTCCAAACCGCCAAATTTTACAAAATTTGCCATCT
GCCAAATTAAATACCCGCCAAAATTGGCACTTTGGCCGACCGCCAAATCA
AGTACACGCCAAAATTAATACACCTAAGGTATTATGGATTTGAGCAATTC
CTGAACAATTTTTTTCATTTCGACCAAATTCAGGATTTTACGGCATTTTC
AAATTTGACATGTTTTACCCATTTTTTGGGACCATGGCTTAACACCAACT
TTGTCATTGCCGAAAATCTGAATGAGACTTATTGAGATGGATTTTTTACT
GAAAGTGGTAGTATCAATGGGTTACTTCAGGTTTTGGCCAAAAAAAGGTG
TCGTCCGCCGGACTCTAGGTGGCTAGAAATAATTGATCAAAACCACCTTT
CCAAAACGACTGATAAAAAATATCTTGAGTTTGGAGGCCCGTTCAGGGGC
TCATAAAATCTATTTTAAGCATCAAAATGCAACAAAACCTTTTGTAATGT
GAAATATCAATAAAATACTACAAATCTAGCAAATAATAAGCACTTTGAAC
GATGGTGGTTTTGGGCTATGACCACTAGAAATATGAACCAGCCACAAGGT
TTACTAGGTTCTAGACCCTTTTTGGCAACCGGACAGCATTTGAAAAACTG
GATCTGGAGCGTACTTTGAACAACTCGAGAGTGATGGCAAGACAAGCAAA
CCCTCTCAAATCCCTGAAAAAATTCATAACCATGTCAGGTATCAGGTTTG
GTTTGAATTTGAGCAAAATCTGAGGATATCACTTCCTAGCCCTGCCTGAT
TCTTACAGACAATGGCTCTTAAGCCATATTCAAGCAGAGTCTGATTCAAG
CTCCTAATTTTCCAAACCCAGCAAAAGTGATGACGTCAGACGGGGACCAG
TCAAATTTTCAAAATCGATTTCATCATCCCTTTTCTGCTGCCATCTTATT
ACCTTTTAATTTTGGCGTGTACTTAATTTGGCGGATGGCAAATTTGTTAA
AATTTGGCGGGTATTTAATTTGGCGGATCGGGAAATTTTAGGTCCTTGTA
GATCAAAAATATTAATGTTTATAAATTAAAGATGCTGATTTTTCGGTAGA
ATTTCTACCTAAAAGTATTTTGTTAAATTTGGCGGGTATTTAATTTGGCG
GACGTTCAATTCTTAAAATTTTGGCGGGTATTTAATTTGGCGGATTTTAC
CAAAAATGGCCAAATCTGCCAAATTTAATCCCCGCCAAAATTAATACACT
TAAGGTATTTAGAATACATTTTAGTGACCTTTCTTAATTTTTACCCTGCT
GGATAAGTTGGGTTAAACTTCAGTTTATAGCAAAATTAAAATGATCTAAA
TGATGACTCTGCTTTCATTTTAGGACAATGAAGATCCCGAGGAAAAAATG
TCAACGTGCAAAATCTCAACTTCGTGTCCCATCCTTCTCATAGAGAAAAA
TAAAATTCATCTTCTACTTCACAAGAAATTGTTGTTCAGCACTGAACGTA
AATGCATTATTGAAGCCTTTGTCGCGTATATCGCGTCTTACTATCTGGTC
AACATGGGTTACCCATTATCTTTGGAAATTGGCTTGTCAGTCCTACAACT
CATCCTTTTCAAAGATGATAACATCAGGAGCGAAATAAAGGAGGACGTGC
TCAAAATCCACAAAGAGTACCAAAAATTTTGAACAGACTACTTTAGGCTT
CAGGTATTATGTATTTTAAACCTTTTTGATACTTAAGCCCCTGCACTATT
AGTTTTTGGTTAGGTTAGGTTACTATACCGTATTTCTTCTAATAAGCGCC
GCGGCGCTTATTAAATTTTCTTGATTTAAGGTGCGGCGCTTAATAAAGGG
CGGCGCTTAATAGAGGGCGGCACTTATTTCAAAATTTGAAAATTTAGTTT
TTCAAAGGGCTTCAATAGTTTCACGAAGTTGGTTAAATGTATATAGATGG
TGGGTTCTTTATACTTTAAAGCTCAGACGTTGTTGTAATGACATAGAATA
ATGATAGATTTATGATTTTAGAGTTCGCTATTGAAGGTATAAGTTTGAAT
GTCTTCATTTTCAAGCCATTTTCTAATAAGCGCCGCATTTAGAGGTGCGG
CGCTTATTAGAGGGCGGCGCTTATATCGAAATTTAGATTTAAGGTGCGGC
GCTTATTGGAGGAAATACGGTACTCTATTTTTGGACCTACCTGGAGGTCC
TATAAATTAACCTTTGTCCGTCCGTCCGTTCGTTCGTTACCAGCTTTTCT
CGAGATTGGCTCATTTGTTTTTTTNN Coding sequence (CDS) from alignment at sc0000099:32242..35217- >TCONS_00009834 ID=TCONS_00009834|Name=TCONS_00009834|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at sc0000099:32242..35217- (Clytia hemisphaerica)
GACAATGAAGATCCCGAGGAAAAAATGTCAACGTGCAAAATCTCAACTTC
GTGTCCCATCCTTCTCATAGAGAAAAATAAAATTCATCTTCTACTTCACA
AGAAATTGTTGTTCAGCACTGAACGTAAATGCATTATTGAAGCCTTTGTC
GCGTATATCGCGTCTTACTATCTGGTCAACATGGGTTACCCATTATCTTT
GGAAATTGGCTTGTCAGTCCTACAACTCATCCTTTTCAAAGATGATAACA
TCAGGAGCGAAATAAAGGAGGACGTGCTCAAAATCCACAAAGAGTACCAA
AAATTTTGAATGCATCTGATGAGCAACTTAAATAAAATTTTTGGAAAGCT
CAAGAAAAAGAGTGTAAAGACTCAGCAAATCTTTGTTGAACTTGCTGACA
ATGAAGATCCCGAGGAAAAAATGTCAACGTGCAAAATCTCAACTTCGTGT
CCCATCCTTCTCATAGAGAAAAATAAAATTCATCTTCTACTTCACAAGAA
ATTGTTGTTCAGCACTGAACGTAAATGCATTATTGAAGCCTTTGTCGCGT
ATATCGCGTCTTACTATCTGGTCAACATGGGTTACCCATTATCTTTGGAA
ATTGGCTTGTCAGTCCTACAACTCATCCTTTTCAAAGATGATAACATCAG
GAGCGAAATAAAGGAGGACGTGCTCAAAATCCACAAAGAGTACCAAAAAT
TTTGAATGCATCTGATGAGCAACTTAAATAAAATTTTTGGAAAGCTCAAG
AAAAAGAGTGTAAAGACTCAGCAAATCTTTGTTGAACTTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009834-exon-sc0000099-1575043694:35031..35217 | TCONS_00009834-exon-sc0000099-1575043694:35031..35217 | Clytia hemisphaerica | exon |
| TCONS_00009834-exon-sc0000099-1575043694:32688..33144 | TCONS_00009834-exon-sc0000099-1575043694:32688..33144 | Clytia hemisphaerica | exon |
| TCONS_00009834-exon-sc0000099-1575043694:32242..32423 | TCONS_00009834-exon-sc0000099-1575043694:32242..32423 | Clytia hemisphaerica | exon |
| TCONS_00009834-exon-sc0000099-1510915933:35031..35217 | TCONS_00009834-exon-sc0000099-1510915933:35031..35217 | Clytia hemisphaerica | exon |
| TCONS_00009834-exon-sc0000099-1510915933:32688..33144 | TCONS_00009834-exon-sc0000099-1510915933:32688..33144 | Clytia hemisphaerica | exon |
| TCONS_00009834-exon-sc0000099-1510915933:32242..32423 | TCONS_00009834-exon-sc0000099-1510915933:32242..32423 | Clytia hemisphaerica | exon |
| TCONS_00009834-exon-sc0000099-1491911889:35031..35217 | TCONS_00009834-exon-sc0000099-1491911889:35031..35217 | Clytia hemisphaerica | exon |
| TCONS_00009834-exon-sc0000099-1491911889:32688..33144 | TCONS_00009834-exon-sc0000099-1491911889:32688..33144 | Clytia hemisphaerica | exon |
| TCONS_00009834-exon-sc0000099-1491911889:32242..32423 | TCONS_00009834-exon-sc0000099-1491911889:32242..32423 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000099 | supercontig | sc0000099:32242..35217 - |
Blast
The following BLAST results are available for this feature:
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