TCONS_00009826 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009826
Unique NameTCONS_00009826
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length487

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009826 ID=TCONS_00009826|Name=TCONS_00009826|organism=Clytia hemisphaerica|type=transcript|length=487bp
GTAACACACACTTTCAACGTACAGGATAAACGTGCATTCGAACTTCATAT
TCTCAAACATCAACACGTGAAAATCTACACAGCAATATCTTTCCGCAACC
GGCTAAGATCTTCATAATTTATCTTTATACACATTATTACTCGGTTACTA
CATAAATATGCAAACGCGTCGCTCAAGCTTGGCACCACCTGCCACCATCG
AAAAGACTGACTCCTCTACACAGATGAATAATGTAGTGGTTGATGACACT
CAAGACGTTCCCGTCGAAACGGACGTCTCTAACTTAACTGACGTCACTGA
TGTTAATCAATTATCAACTGAAATGCTTAAGACAAAAAACTCTATTCTGA
ATAGTGAGCTTGATGTTCAGAGCAAACCTACTGTGAGGGAAATTCTTGCA
CCCTGGCTTAAACCAGTCATACTGACCATTTGTGGATTCTTGGTCCTAGG
GATCGCTCTCTATGTCTTCGGTTTCGCTAATTCTGGG
Run BLAST on NCBI

protein sequence of TCONS_00009826-protein

>TCONS_00009826-protein ID=TCONS_00009826-protein|Name=TCONS_00009826-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MQTRRSSLAPPATIEKTDSSTQMNNVVVDDTQDVPVETDVSNLTDVTDVN
QLSTEMLKTKNSILNSELDVQSKPTVREILAPWLKPVILTICGFLVLGIA
LYVFGFANSG
Run BLAST on NCBI

transcript from alignment at sc0000099:568588..573311+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009826 ID=TCONS_00009826|Name=TCONS_00009826|organism=Clytia hemisphaerica|type=transcript|length=4724bp|location=Sequence derived from alignment at sc0000099:568588..573311+ (Clytia hemisphaerica)
GTAACACACACTTTCAACGTACAGGATAAACGTGCATTCGAACTTCATAT
TCTCAAACATCAACACGTGAAAATCTACACAGCAATATCTTTCCGCAACC
GGCTAAGATCTTCATAATTTATCTTTATACACATTATTACTCGGTTACTA
CATAAATATGCAAGTAAgtaattaatattttttcattgaaaatgtttaaa
tNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTG
CTCCAGTAACACACACTTTCAACGTACAGGATAAACGTGCATTCGAACTT
CATATTCTCAAACGTCAACACGTGAAAATCTACACAGCAATATCTTTCCG
CAACCCGGCTAAGATCTTCATAATTTATCTTTATACACATTATTACTCGG
TTACTACATAAATATGCAAGTAAgtaattaatattttttcattgaaaatg
tttaaatctTAAAACAATTAATAGCTCAATAAAGAAATACAGTAAAGGCT
AAGACCAAGAAAAGCTTGATGAATTCCTCgggcttgtttttattctttat
tggTCCAAGTTATCAGTTGGTTATGAATTTATAGCTCACAACTCTAGGAA
AACTTATATATGatattgatttattttcttttagatttttgattatGTAA
GGCGTTAGTATAGACTCGCGCCTAATGCTACTTGattaatacagggtgtc
ccgaaaaaaagtagaAAGTACAACTAgaaagtagaaagttttatgtgtgt
GTTTGTCAAAAAATAGTTCAGTATAAATGTGACTGTTTTTCTAATATACA
GGGAACTCTGGAACGGAGGTATATGGTATCAAATTAGATATGGAATCTTA
TTTGATCGAatttacagagagattcgaattatagaaagtattttaagaga
gTTTTTCCTTGATGGGGACTGGACtaaagttcgaattatagaaagattcg
aatataatggaagttcgaattagcgcgAGTCTACTGTATTTTGTTTCTCT
TCTTAGACGCGTCGCTCAAGCTTGGCACCACCTGCCACCATCGAAAAGAC
TGACTCCTCTACACAGATGAATAATGTAGTGGTTGATGACACTCAAGACG
TTCCCGTCGAAACGGACGTCTCTAACTTAACTGACGTCACTGATGTTAAT
CAATTATCAACTGAAATGCTTAAGACAAAAAACTCTATTCTGAATAGTGA
GCTTGATGTTCAGAGGTAATAATTCTTTAAGTACCCTAATCATctcctct
ctctctctctctccctCCCTAATCATTTGTCAACCCCTATCGCAATGATC
AGTAATTGAATATTTCTAAGGGATCCCTGCTACAATCATAGGCAGAATAT
ATGGCAAAAAACGAATTCAAGTAGTATTTAAGTGCCTTAACTTACAATCA
GAAACTCTGAGTATCAAcgtgagacttaagacttaaaaGCTTAGGATCTA
GGGATCAATCAGCTTAGAAATGGTCCCACTAGGCTAAGAATATAGTCTGA
AAGAAATTATAATATCCGATTACATAAAGTAGCCTAAAAATGTCATTCTC
GACCGAACTTTTAATTCAGCAGAATCCCAAGATACCTAAAAATGCGAACA
TATTCTGACAACCAAGGGAGGGGTTtataggggttcgaaataccgaaatc
ccgaaaatttgaaaacaaaataataacaccgtcacaccggtttgtagagg
ttaaaataccggcatagtgacaaaaaataaggctgaataccgtcaccgtc
tgattttaaatatcgttttcccgtctcttttttcgtcaaatcccgtaata
cggTACTGAAAAAAGGCAAATTCCGTCACaacgtaaaagtacaacccccc
ccaAACCAACAGTGTcacattaacattaacaactgtttatttgtttttat
acaGCAAACCTACTGTGAGGGAAATTCTTGCTCCCTGGCTTAAACCAGTC
ATACTGACCATTTGTGGATTCTTGGTTCTAGGGATCGCTCTCTGTGTCTT
CGGTTTCGCTAATTCTGGGTGAGTACTAATGAATGAACGAAAATATGTTT
GTATGCAGTGCCGTAGCTACCAATATTTTGCCtttattcgaattatttta
gtttttagagTGTGTTTTTACCCAATTTAGAGctctagatttcaaaattt
cctcccTCACAGTGTCACAGAACAACAATATCAAATGGCTTCCTGCGGCA
CTGTGTATGTATTATAAAGTTGACCCTCGCTAATTAGATTTTGAACAGCA
CTTGTTCGAATTGTATAAAGTGTTTcaagggtttctccttgacagggact
ggaaaaaagttcgaattatagaaagattttaataatagaagttcgaataa
acgAGGTTTTACTGTATGTAGAATGGAGTCTCTTTAGCCCAAACCTCTAT
ATCTCGAATAAGTTTTATATGGTTCTTTCAGTTAAAAACGATTAATCaac
ctcaaaattttcttaatgTTCTTCAATTTTGTGTTCCCTGTGTATGTTCG
AGTTACGAAGACTTCACGGTATCAGTAAATTTGACTGAAGAGTTACctat
ttttgcgatttttagggaatgcataatttacgggagtttctaaacatcga
ctagaaatggcgaccacgaccagcgaccacgaccggcgaccagataaatt
tgggttatcgagtttttcctctttctccaccgtagagNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTGGTCTAAGTTATCAGTTGATTATGAATTTATAG
CTCACAACTCTAAGAAAACTTATATATGATATTgatttataattttcttt
tagatttttgattatATAAGGGGTTAGTATAGACTCGCGCCTAATGCTAC
TTGattaatacagggtgtcccgaaaaaaaattcacagttCGAACACAACT
GcaagtagaaagttttattgtGTGTTTGTCAAAAAATAGTACGTATGGTA
TCAAATTAGATATGGAATTTTATTTGATCGAATTTAcatagagattcgaa
ttatagaaagtattttaagagagTTTTTCCTTGATGGGGACTGGAcaaaa
gttcgaattatagaaagattcgaatataatggaagttcgaattagcgcgA
GTCTACTGTAATATGTTTCTCTTCTTAGACGCGTCGCTCAAGCTTAGAAC
CACCTGCCACCATCGAAGAGACTGAATCCTCTACACAGATGAACAATGTA
GTGGTTGATGATACACAAGACGTTCCCGTCGAGACGGACGTCGCAAACGT
AACTAACGTCACTGATGTTAGTCAGTTATCAACTGAAATGTTGAAGACCG
AAAATCCTGTCCAAAACAGTGAGCTTGATGTTCAGAGGTAATCATTCTTT
AAGTACCTTAATCATTTGTCAACCCCTATCGCAATGATTGAtaaacaaaa
ttaaatatttttaaggGATCCCAGCTATACAATCATAAGCAGAATATATG
GCAAAAATAGAATTCAAGTAGTATTTAAGTGCCTTAGCTTAGGGTCAGAA
AGTTTTAAACTCTGAGTATAAAcgtgagacttaagacttaaaaGCTTAGG
ATCTAGTGATCAATCAGCTTAGAAATGGTCCCACTAGGCTAAGAATATAG
TCTGAAAGAAATTATAATATCCGATTACATAAAGTAGCCTAAAAATGTCA
TTCTCGACCGAACTTTTAATTCAGCAGAATCCCAAGATACCTAAAAATGC
GAACATATTCTGACAACCAAGGGAGGGGTTtataggggttcgaaataccg
aaatcccgaaaatttgaaaacaaaataataacaccgtcacaccggtttgt
agaggttaaaataccggcatagtgacaaaaaataaggctgaataccgtca
ccgtctgattttaaatatcgttttcccgtctcttttttcgtcaaatcccg
taatacggTACTGAAAAAAGGCAAATTCCGTCACaacgtaaaagtacaac
cccccccaAACCAACAGTGTcacattaacattaacaactgtttatttgtt
tttatatagCAAACCTACTGTGAGGGAAATTCTTGCACCCTGGCTTAAAC
CAGTCATACTGACCATTTGTGGATTCTTGGTCCTAGGGATCGCTCTCTAT
GTCTTCGGTTTCGCTAATTCTGGG

Coding sequence (CDS) from alignment at sc0000099:568588..573311+

>TCONS_00009826 ID=TCONS_00009826|Name=TCONS_00009826|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at sc0000099:568588..573311+ (Clytia hemisphaerica)
ATGCAAACGCGTCGCTCAAGCTTGGCACCACCTGCCACCATCGAAAAGAC
TGACTCCTCTACACAGATGAATAATGTAGTGGTTGATGACACTCAAGACG
TTCCCGTCGAAACGGACGTCTCTAACTTAACTGACGTCACTGATGTTAAT
CAATTATCAACTGAAATGCTTAAGACAAAAAACTCTATTCTGAATAGTGA
GCTTGATGTTCAGAGCAAACCTACTGTGAGGGAAATTCTTGCACCCTGGC
TTAAACCAGTCATACTGACCATTTGTGGATTCTTGGTCCTAGGGATCGCT
CTCTATGTCTTCGGTTTCGCTAATTCTGGGATGCAAACGCGTCGCTCAAG
CTTGGCACCACCTGCCACCATCGAAAAGACTGACTCCTCTACACAGATGA
ATAATGTAGTGGTTGATGACACTCAAGACGTTCCCGTCGAAACGGACGTC
TCTAACTTAACTGACGTCACTGATGTTAATCAATTATCAACTGAAATGCT
TAAGACAAAAAACTCTATTCTGAATAGTGAGCTTGATGTTCAGAGCAAAC
CTACTGTGAGGGAAATTCTTGCACCCTGGCTTAAACCAGTCATACTGACC
ATTTGTGGATTCTTGGTCCTAGGGATCGCTCTCTATGTCTTCGGTTTCGC
TAATTCTGGGATGCAAACGCGTCGCTCAAGCTTGGCACCACCTGCCACCA
TCGAAAAGACTGACTCCTCTACACAGATGAATAATGTAGTGGTTGATGAC
ACTCAAGACGTTCCCGTCGAAACGGACGTCTCTAACTTAACTGACGTCAC
TGATGTTAATCAATTATCAACTGAAATGCTTAAGACAAAAAACTCTATTC
TGAATAGTGAGCTTGATGTTCAGAGCAAACCTACTGTGAGGGAAATTCTT
GCACCCTGGCTTAAACCAGTCATACTGACCATTTGTGGATTCTTGGTCCT
AGGGATCGCTCTCTATGTCTTCGGTTTCGCTAATTCTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005495XLOC_005495Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009826-proteinTCONS_00009826-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009826-exon-sc0000099-1491911889:568588..568750TCONS_00009826-exon-sc0000099-1491911889:568588..568750Clytia hemisphaericaexon
TCONS_00009826-exon-sc0000099-1510915933:568588..568750TCONS_00009826-exon-sc0000099-1510915933:568588..568750Clytia hemisphaericaexon
TCONS_00009826-exon-sc0000099-1575043694:568588..568750TCONS_00009826-exon-sc0000099-1575043694:568588..568750Clytia hemisphaericaexon
TCONS_00009826-exon-sc0000099-1491911889:569744..569952TCONS_00009826-exon-sc0000099-1491911889:569744..569952Clytia hemisphaericaexon
TCONS_00009826-exon-sc0000099-1510915933:569744..569952TCONS_00009826-exon-sc0000099-1510915933:569744..569952Clytia hemisphaericaexon
TCONS_00009826-exon-sc0000099-1575043694:569744..569952TCONS_00009826-exon-sc0000099-1575043694:569744..569952Clytia hemisphaericaexon
TCONS_00009826-exon-sc0000099-1491911889:573197..573311TCONS_00009826-exon-sc0000099-1491911889:573197..573311Clytia hemisphaericaexon
TCONS_00009826-exon-sc0000099-1510915933:573197..573311TCONS_00009826-exon-sc0000099-1510915933:573197..573311Clytia hemisphaericaexon
TCONS_00009826-exon-sc0000099-1575043694:573197..573311TCONS_00009826-exon-sc0000099-1575043694:573197..573311Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099supercontigsc0000099:568588..573311 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.141366	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.155981	0	0	0	0	0.451654	0.48914	0	0	0.141646	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009826 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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