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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009818 ID=TCONS_00009818|Name=TCONS_00009818|organism=Clytia hemisphaerica|type=transcript|length=591bp
CCATCCAATTTGTCGATTGGTGTCCAACTGGATTCAAGATTGGAATCAAC
TACCAACCACCAACTGTAGTACCAGGAGGTGATCTTGCTAAAGTCCAAAG
AGCTGTCTGCATGTTGTCCAATACAACTGCTATTGCTGAAGCCTGGGCTC
GACTTGATCATAAATTCGATTTGATGTACGCTAAACGTGCTTTTGTGCAT
TGGTATGTTGGAGAAGGTATGGAAGAAGGAGAATTTTCAGAGGCTCGTGA
AGATTTGGCTGCTTTGGAGAAAGATTACGAAGAAGTTGGTTTGGATTCTG
TAGACTCCGATGAAGAAGATGaggatgaatattaaatttCGGACAAACTC
AGCAAATTTCGGACATCCTGAACAAATTTCGATTACCTTGAACAAATTTC
GGACAAATCATCGGACgaattttgtttatatattaAATCTACTTGTTATC
CAAGAATCtataaaattattaaatttattttacacCAACTTCAGTAAATT
AAGTTTATTCAAATTGCactgcttaaaaaagtcttcattataattttaat
tgtaaattcaacaaaataatttatctaTGCACGTATAAAAA Run BLAST on NCBI transcript from alignment at sc0000099:432522..439265+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009818 ID=TCONS_00009818|Name=TCONS_00009818|organism=Clytia hemisphaerica|type=transcript|length=6744bp|location=Sequence derived from alignment at sc0000099:432522..439265+ (Clytia hemisphaerica)
CCATCCAATTTGTCGATTGGTGTCCAACTGGATTCAAGATTGGAATCAAC
TACCAACCACCAACTGTAGTACCAGGAGGTGATCTTGCTAAAGTCCAAAG
AGCTGTTTGCATGTTGTCCAACACAACTGCTATTGCTGAAGCTTGGGCTC
GACTTGATCATAAATTCGATTTGATGTACGCTAAACGTGCTTTTGTACAT
TGGTATGTTGGAGAAGGTTAGTTTAAGACTTTTTTCTTCTGTTTGCGAAG
ATTTTCAATGCTTTACTTCGATTTCACTTTCTAGTTTCTGATGCATGCTG
GAATGCTATATTTATAGAGACCACAGCATCACTCTGATAAAAGAGTATGG
GGGAGTATGTCAGGTATTACATGTGTTGTGGTGACGATACTCATAGGTTC
AACACCTGCGAATACAAATTTTCTCCTGTGTAGTTCGAGTATCTTTGTCC
ATACACCAATAACTCAGGGTTAGCAGTGTCTGGCAAGCGTGTTAATTCCC
CTATCCTATTTATCCAGGGATAGGGCCCATTCTCTCTTCTCTCACAGCAT
CACATTTTCAGATGCTACTTTTAAGGAAAGCAATATTTAGTGCTTAataa
taactttaaaaaaatattttacaggaTACTAACAAATATTCAAGGTGCTT
ATTAAGTTGTTAGATAATACACTGATCTTAATTTTTAACGTTTGATTTTC
CTGTTCTGTTTTAAGGTATGGAAGAAGGAGAATTTTCAGAGGCTCGTGAA
GATTTGGCTGCTTTGGAGAAAGATTACGAAGAAGTCGGTTTGGATTCTCA
AGATTCCGATGAAGAAGAAGACGATGGTGATGAATATTAAATTTCGGACA
AAGTCAGCAAATTTCGGACACAATGAATAAATTTCGGACAAACTCTTGGA
CGGATTTTGTTTATATTCAAACAcacaatttattatttattatctgAAAA
TTGAAATGAGTTAATGCTAGATGCACCGCAATGTAAATAAGAAATATTCG
AAATAATGCACTGGAACAAAGTTCACATtaattttgcttgtaaaattttt
aaatgttcAAATAAGTTAAATATCTACGCACGTTTTTCGTATCTACTTAC
AAgtgggaaattattatcaattcttaggcaaattaaggcctgtccagatt
tttcaaacttacctCAATTTTTTGTCACCGTTTCCACTTATCATAGCANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgctgacgtcagcaaaacttg
ttttttgaataactccagtttggcttatggtaaaaacatgaaatttggac
caaagttgcacaccattaaaaggatcattttaaaaaagaaaatttttgaa
attttgctgacgtcagcaggtaattgcaaaattttgtattttgctggttt
ctgctgacgtcagcaaaatttgcaaaaaaaaattatgcaaaaatgttcct
attattgatatgcaatttttgtccaaatttcatgaatataccataagcca
aacttgagttattcaaaaaacaagttttgctaacgtcagcattttttgtt
tttttctaatatctttttttgtgcgaaaaaattaattatggcacagctat
tccagtgatctacactccaataggcttctttcgatgtatgaagtgatatg
ctatgacaagtggaaacggtgataaaaaattatggtaaatTTGGACGTGG
CTTAATTTGCCGGAGTTGGGTGGCACGTATTCTCCACTCAAATGCTGAAT
ATGTTTTAAAAGTGTTACTATGGATGACCTTCACTTGTATGAGGCTACAA
TCatggtaaaatttgagaaaaaataaaagggaaattcccacaaaATCTTA
TAGCCCTAATCGATTTAGaagtgctctaaattaggttggaagggtagagt
tttaacgctagacttaagacttaaggaTCTGAGGATCTGATCGGATCtga
gttcaaaaatggtccaataaggctcataatatagcctggaagtctataaa
cccgagccaaattaAAATGtccgattaaattaaagagatggcccaaaacc
gaactccaaatttcgaaaaacaaggaaataagCTTActtctcaatagatt
ttgaccatgaaaGTAGGTGGATCCCATTTAGTGATAGAAGAGCCCCCTCC
CAAGCGGTATGCGTGATGACACGATAAGGACTTTTTTCTACCGTGATTAc
atgatttggaatttttttgtgattgtGTGATCAGAGGACAATACGTGATc
gtgttttgaaagatttttgctgatttgcgtgatcgtgatcgaagacaaaa
aattgcgtgatatgcGGTGATATATGAGGAAAAACTTAACTTTTACCCTT
TTTCATATAAGAATAGTTTTATAGATTGAGGGTGGCAAAATTCCAAAGAA
TATAAAGCCCTGTGTTAGAGACCCGATGGTACCTCTTacctactggaaaa
tttggctaaaatttcgtcCCTGGGAAAAATACCCCCTGCAATTTctgctt
aactggaaaattgttttcatccctattttgaaatttaatgaaattaactt
aaactcgttttttttactcaaactatagtatttgaaattcaatggaaaaa
ttaGCACTCAAAAACCATCTACACTGCGGATTATTGTACAGACTTTGTAT
TGTACAGAAACAATAGGATTTTTATCCCATCTCTCCCATGGGGGAGAGAT
GTTTCACCGgggctttgagacaggggtgcaaaTACGAACAATTTAAGAAA
TGCTTAGACTAGAATAGTTGAATTTTAAGTAAACCAAGGGACGAATCAGC
AAAAGTAGTGTATTAAAATACTTCAGTATTAcctagaaaaaagttttaag
cTTAGAGTCCCAAAAGGCAAGCCTTATTAAAATTCACTAGTTCTTACATA
AAAGGGTGTATTGGGGACAAGAATTTGTAGAAACCAAAGTGATTGTTACG
CTGAATTTAGATATTGTCCAGGCGTCTCTATTTTGAACTTAAGATAGGAA
TATGGTATTCAACATGTAATTCACTCAATAAACAGAGTATTCAATGTCAC
CCTCATAAAAGATTAATAAGCTAATACAGGTTTCTGTCAAAGTCATGAAA
AATTACTACTTCTATtcataccccctggaaattacAAAGTCTATTCGATT
TTCAATGATAATCTAGTTACGTTCAGGGGGTCGAGAAATCTACAAATGAA
CACAAAATGAAAACGTCTCAGTTAAGATCGATTTGAAACTTTCAAGCGAA
AGGTCGTTATTTATTTTGCCGAAGTTCAAATCATTTTATccgttattttt
tcttattctcaATTTTTCCGTTAATTTAAAGTTTTCAGAATGGTAAGttt
gtttattgtttttatatttttaccatATTTCTAAATCACAATAACAAATA
TCATCCTTAAAGGTCAAATGAATTTCAATGTGGGTACCCCTCAAATTTCT
TTGCTCCCATTTGCGccatttgattttcaaaatccaCCTTTACGGTTCTT
CCGCCAGGCCTGATGAATCTTAACCTTTTACGGAGCAAAACTCCAGCGTG
ACAGAAAAGAGCTTGAAATTGTATCTTTAGTAGGTGGCAACTGCAACCTT
TTCAAAATATAGGTCTTAAAGTTACTCAAACTATAGCGTATCTGAGACCG
AAAAACAGCTTGTTATTCCTTTAGAATAATGGAATGGAATGTTTCTATTT
ATATTACACTTAATATTTTAGCGTGAATGTATCTCCATCCATCTTGGCCA
AGCTGGTGTCCAAATGGGAAATGCTTGTTGGGAATTGTACTGTTTGGAGC
ATGGAATCCAACCTGATGGTCAAATGCCTTCAGACAAAACTATTGGAGGC
GGTGACGATTCATTTAACACCTTTTTCAGTGAAACCAGTTCTGGCAAACA
CGTCCCAAGAGCTCTTTTTATTGATCTGGAACCCACCGTAGTTGGTAAGC
AGTTTGTCTTGATTTGTTTTTAGAGTGGGTTAATGTGAACATACACTCAA
CATATCTTAGCAGATACAAAAGAGGCTACATGTAGCTTTTAATAAAATTC
GAATTAAAAGTGGTTTGTGCTGGATAAAAAGATAATCAGGATTGGAATAT
tatgaaatagaaaaaattcaaaaaagtttggaaagtgaagatgaaaaatg
aagaaggaaataataaattttttgtaaaagtgcACTACGTTTGTTTACCT
TTTCTGTTGCTACGTGTTACTATGATGAAGCCATCTTGAAAATAAGATCA
ATGGATATATTGAAATTGATTTATCCTGAATAAGCATTCTTGAatcgaat
ttttaaatttctttttcataaaatgtttttttcattgaaaaaaaatgtgg
CTCAGACTCTTTTTTCCTAAACCTCTGGTGGAGTACACATCCCTTCACAA
AGTAATTTCAAAGTGAATCAATAATAaagcttttattgaaaaaatgtttt
atcttTACCAAATCTGTGACATTTACCCAATAAATCACCATACATATAGA
TGGGAAATATTGGATTCATCAAACATGTTTCTGCATGTTATGTTTGAAGT
AAATTATCCAGTCTTgcaattttaagatattaagaAGATATTCAAGCTGA
AAATATAATcctaaattcaaatttcttcTTCTAGATGAAGTCCGCAGTGG
AACATACCGACGTCTTTTTCATCCGGACCAACTCATCAGCGCNATCGATG
TCTTGGTTGACCGAATCAGAAAAACAGCTGATAAATGTACTGGTCTTCAA
GGTTTCTTAGTCTTTCACTCTTTCGGTGGCGGAACTGGATCCGGATTCAC
TTCCTTGTTGATGGAACGTCTTTCTGTCGAGTacggcaaaaaaacaaaac
tcgaATTCGCCATTTACCCTGCTCCACAAGTTTCCACAGCAGTTGTCGAG
CCTTATAATGCCATCTTAACGACACACACAACCTTGGAGCACACCGATTG
TGCTTTCATGGTTGACAATGAGGCCATCTACGATATCTGTCGTGCTAATT
TGTCTATTGACCGTCCGACGTACACCAATTTAAACCGTTTGATTGGCCAA
ATCGTCTCCTCCATTACTGCTTCTCTCCGATTCGATGGTGCTTTGAATGT
CGATTTAACTGAGTTCCAAACTAACTTGGTCCCATATCCACGTATTCATT
TCCCCTTGGCAACTTATGCTCCAGTCATCTCTGCTGAGAAAGCTTACCAT
GAACAACTCAGCGTTGTcgaaatcaccaactcctgttTCGAACCATCCAA
CCAAATGGTTAAATGTGATCCACGTCATGGTAAATATATGGCATGCTGTA
TGTTGTACCGTGGTGATGTTGTTCCCAAGGATGTCAATTCTGCCATTGCT
ACCATCAAAACAAAACGAAGTATCCAATTCGTCGATTGGTGTCCAACTGG
ATTCAAGGTTGGAATCAACTACCAACCACCTACTGTTGTACCAGGAGGTG
ATCTTGCTAAAGTCCAAAGAGCTGTCTGCATGTTGTCCAATACAACTGCT
ATTGCTGAAGCCTGGGCTCGACTTGATCATAAATTCGATTTGATGTACGC
TAAACGTGCTTTTGTGCATTGGTATGTTGGAGAAGGTTAGACTTTTTCTC
TCAAATCAACAAAATGCTTAGCTTTCGTAAGGATCTATAACTTTAGTCAT
CATTGGTAGCTTGAAGTAAATACAGTCGCTCccatgttgtcttctgacca
gccaccagaaacGTTGGAAAACCAATGGATCCGGCGACACTAGAATTCAC
AACCATGCCATTTAATTTAGATCCTACCTCCATGATTCTAGGAGATTTGC
CCCAAGAAGTTTGCCCCCGTCATTATCTCAGACTGCACGAATTAAGATCT
TGAATCTTCAATCTTATTGttacactgggcgaaataagtgATTTCCAACC
CTGGAAATATcttggaaatatgatatttccatatacattagtggaaatat
gacttttctatactTCCAAAGTTTAGGAAATaacatatttcatgatattt
caaTGAGTTTAATGTATATGGAAATATTACactttcaagatatttccagg
attggaaatctcttattttgcCCAGTGTTATTGCAATTATTCTTGTCATT
AATTCTTCTGTGGTCTTTTAATCAAAGGATTctgtttaaaatatattttt
cgatattttctgTTTTAAGGTATGGAAGAAGGAGAATTTTCAGAGGCTCG
TGAAGATTTGGCTGCTTTGGAGAAAGATTACGAAGAAGTTGGTTTGGATT
CTGTAGACTCCGATGAAGAAGATGaggatgaatattaaatttCGGACAAA
CTCAGCAAATTTCGGACATCCTGAACAAATTTCGATTACCTTGAACAAAT
TTCGGACAAATCATCGGACgaattttgtttatatattaAATCTACTTGTT
ATCCAAGAATCtataaaattattaaatttattttacacCAACTTCAGTAA
ATTAAGTTTATTCAAATTGCactgcttaaaaaagtcttcattataatttt
aattgtaaattcaacaaaataatttatctaTGCACGTATAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009818-exon-sc0000099-1491911889:432522..432599 | TCONS_00009818-exon-sc0000099-1491911889:432522..432599 | Clytia hemisphaerica | exon |
| TCONS_00009818-exon-sc0000099-1510915933:432522..432599 | TCONS_00009818-exon-sc0000099-1510915933:432522..432599 | Clytia hemisphaerica | exon |
| TCONS_00009818-exon-sc0000099-1575043694:432522..432599 | TCONS_00009818-exon-sc0000099-1575043694:432522..432599 | Clytia hemisphaerica | exon |
| TCONS_00009818-exon-sc0000099-1491911889:438169..438306 | TCONS_00009818-exon-sc0000099-1491911889:438169..438306 | Clytia hemisphaerica | exon |
| TCONS_00009818-exon-sc0000099-1510915933:438169..438306 | TCONS_00009818-exon-sc0000099-1510915933:438169..438306 | Clytia hemisphaerica | exon |
| TCONS_00009818-exon-sc0000099-1575043694:438169..438306 | TCONS_00009818-exon-sc0000099-1575043694:438169..438306 | Clytia hemisphaerica | exon |
| TCONS_00009818-exon-sc0000099-1491911889:438891..439265 | TCONS_00009818-exon-sc0000099-1491911889:438891..439265 | Clytia hemisphaerica | exon |
| TCONS_00009818-exon-sc0000099-1510915933:438891..439265 | TCONS_00009818-exon-sc0000099-1510915933:438891..439265 | Clytia hemisphaerica | exon |
| TCONS_00009818-exon-sc0000099-1575043694:438891..439265 | TCONS_00009818-exon-sc0000099-1575043694:438891..439265 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000099 | supercontig | sc0000099:432522..439265 + |
Blast
BLAST of TCONS_00009818 vs. Swiss-Prot (Human)
Match: TBA8 (Tubulin alpha-8 chain OS=Homo sapiens GN=TUBA8 PE=1 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 7.917e-61 Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 3
Query: 3 IQFVDWCPTGFKIGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 278
IQFVDWCPTGFK+GINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
Sbjct: 341 IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
The following BLAST results are available for this feature:
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