TCONS_00009815 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009815
Unique NameTCONS_00009815
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1989

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009815 ID=TCONS_00009815|Name=TCONS_00009815|organism=Clytia hemisphaerica|type=transcript|length=1989bp
CGTGCAACCTCTATGGAATTGAGTGTCATCTGTTATgttgttaatatttt
tacaaatccTCGAGAGAATTGAAGACAGTTTTTAACTGTTTCATGTCGTT
GACGCAATCTCTAGATAGCAGAACTCACTTTTTAATGATACTTGGCTTCA
GTTCGTGCGTGAGTCGAATTAGTTGAAAATAGTGAAGCTCGAAGAAAGTG
ATCAAACGTTTTTGTTGAGAGGGATGCTAAATAGTTTTGGTCAGTTGAAC
TTCTAAATATCAATTTCCGATTGTCACATGAACTATGTAATGCTGAATAT
CGGTGAAAGCTAATTTTGATCAGCTCAATATACATTAGACTCCAGAATTG
TCTCAGAAAGGAGTCTAGACAAAATTAGCCTGCGCTAGGCATACAATCTT
GGAACGCTGATAATActctaaaaataaataatcttGGCATTGTTACTAcg
atttaaatcaatttttgaaatggtATTAATGGATGGCAAAAACCATGAAA
GTTGGCTTCAAAAACGTCGGAAAACATTCGTCGCATATTTGATCGAGACA
TGCGCACTGGGAATGGAATATTCGTTGACTTTCATAACACTTTGGATGTA
CCTGAAAGATGTAATACAAACAGatgatttgaatttattttacaGTTCGA
TCTCGGTTATCTATCTCATATCACAGGTTGCAATGTCGGTGTTATTCGGT
GCTTTATTCGACCATCATCGAAACGCCCGCCTCATGATCCTTATTGGAAA
CTTGTGTATCATCTCAGGTAACATTCTCTACACTATACCCTACTCTCCGT
GGTATTTGTTCACTGGGCGTCTCATCTCTGGCGGTGGTGGGTGTCTTCGC
TCTATCATGACGGCCGAAATTGTCCGCGCTTATCCCAAATCGGAATTAAG
TGGGAAATTTTCATCAATCGGGCTTTCATTTGCACTTGGATTCGTTTTCG
GACCATTATTGAATATTCCTTTTGCAAATGAAAATTTCTCGCTTTTTGGA
TTCCCGATTTCGTACGCTAACGCACCTGGGCTGGTACTAAGTGTTATTTT
CATGGTGATTCAATTACTGGATTTTTATTTGGTTTCGAATTTATCATTGG
AATATGATATGAAAGAATTTGGTGATGGTGATAGTGGAAGCCAATATTCA
ATCATTGGTAATGATGGCGGTGGCGATGGTGGTGGTGTTGATGGTGGTGG
TGAAAGTCAATATTCAATCATTGGTGATGACGGTTATGAGAAAAGTCAGA
TTAAAGATGATCTTGATTCATCCAGCCGACTACTTCCTTTCACCATTGGC
GACGAAGATTCGGATGATCAACCAAGATACCAATGGTatatattcttcaa
aatgatacACAATGTCCAAATCTGTTTCATCCTTTTCTTATCCCTTTTTT
TCATGTATTGTATGGTTTTGTTTGATTTATGGTTACCAATGACTGCAACC
GAATATCTCCAATATGGTGTCACTGAAATCAATTACGTCATTCTTGGATT
TGGTGCATGTGCAGTTGTCCAATTGATCGTGTTTACATTTAGACCCATTC
CCCAACATTTACTGATTTATTTTGCGATGTTTTGTATCGTTGGAATGATG
CTAGATTATGCCATCTTTGTTGTATTGCGACATTTCCATGGCAACCATAC
TGTAAACATAGTATTATTGGCCATTTGGGATTTTTTAGCAGCAAATATCA
TTGCGATGGAGGAAATATTTCTTATAGTAACCCTAGCAACAAAGGTTGGA
TCACGTGTTCAAACTACCACAGAAAGCATCCGATTGGCTTGTTCAAGGAC
TGGGGCGATTTTAGCTCTGACGTCAGCAGCGAGTGCTTTTAGTTGGATCA
CTATAACATGTTCCATTTGTATTTCTTTATTATTTATCTCCTTAATATTT
CTAATTGTAATGCACAAACGATTGAGTGAGGAAAGGGTTCTTGTAAGATA
GGAAATACTTTTAGCTGTCTAGTATACAATAAATTTATA
Run BLAST on NCBI

transcript from alignment at sc0000099:373925..376696+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009815 ID=TCONS_00009815|Name=TCONS_00009815|organism=Clytia hemisphaerica|type=transcript|length=2772bp|location=Sequence derived from alignment at sc0000099:373925..376696+ (Clytia hemisphaerica)
CGTGCAACCTCTATGGAATTGAGTGTCATCTGTTATgttgttaatatttt
tacaaatccTCGAGAGAATTGAAGACAGTTTTTAACTGTTTCATGTCGTT
GACGCAATCTCTAGATAGCAGAACTCACTTTTTAATGATACTTGGCTTCA
GTTCGTGCGTGAGTCGAATTAGTTGAAAATAGTGAAGCTCGAAGAAAGTG
ATCAAACGTTTTTGTTGAGAGGGATGCTAAATAGTTTTGGTCAGTTGAAC
TTCTAAATATCAATTTCCGATTGTCACATGAACTATGTAATGCTGAATAT
CGGTGAAAGCTAATTTTGATCAGCTCAATATACATTAGACTCCAGAATTG
TCTCAGAAAGGAGTCTAGACAAAATTAGCCTGCGCTAGGCATACAATCTT
GGAACGCTGATAATActctaaaaataaataatcttGGCATTGTTACTAcg
atttaaatcaatttttgaaatggtATTAATGGATGGCAAAAACCATGAAA
GTTGGCTTCAAAAACGTCGGAAAACATTCGTCGCATATTTGATCGAGACA
TGCGCACTGGGAATGGAATATTCGTTGACTTTCATAACACTTTGGATGTA
CCTGAAAGATGTAATACAAACAGatgatttgaatttattttacaGTTCGA
TCTCGGTTATCTATCTCATATCACAGGTAAAGATTTCTTCCTATATTTTC
CAATATAGCCTATCATTCCtggggggatacttaggcaaaaatgggtgttt
TTGCTATGTGTGTGCCTTATTAAGgctcgggtttttcaccttccaaagtc
tctctaagccTAAGGGTTTCAAAAATCAGATAAATTTAAATTGGTCTCTT
CTAAGGGTCtgttttttttcacaaactcgaGTGAAAGAAAGAGTGACGTC
cactttttcagcaaaaatcagccTCTATAAaggtcggtctccacttgcgc
gcactGTGATCGCACACgcttcaacttttttcaaccgttacgttagatcg
cgccaatggagttgcttcattttcctttttaccACAATAGTGTgaaagct
ttgctcgaaaaaggtacgatcgaagcgcgcgcaagtggagaccggccctA
AGAGTAATGTTTGGAGGTCAAGCACGCACATACCTAGCATCTTTCAATTC
AGGCTATCATTTGGTGAGTCAAGTTGATTCTTTACGATATCATTATTCGA
ATTGTTGAATTCTCTTATAGGTTGCAATGTCGGTGTTATTCGGTGCTTTA
TTCGACCATCATCGAAACGCCCGCCTCATGATCCTTATTGGAAACTTGTG
TATCATCTCAGGTAACATTCTCTACACTATACCCTACTCTCCGTGGTATT
TGTTCACTGGGCGTCTCATCTCTGGCGGTGGTGGGTGTCTTCGCTCTATC
ATGACGGCCGAAATTGTCCGCGCTTATCCCAAATCGGAATTAAGTGGGAA
ATTTTCATCAATCGGGCTTTCATTTGCACTTGGATTCGTTTTCGGACCAT
TATTGAATATTCCTTTTGCAAATGAAAATTTCTCGCTTTTTGGATTCCCG
ATTTCGTACGCTAACGCACCTGGGCTGGTACTAAGTGTTATTTTCATGGT
GATTCAATTACTGGATTTTTATTTGGTTTCGAATTTATCATTGGAATATG
ATATGAAAGAATTTGGTGATGGTGATAGTGGAAGCCAATATTCAATCATT
GGTAATGATGGCGGTGGCGATGGTGGTGGTGTTGATGGTGGTGGTGAAAG
TCAATATTCAATCATTGGTGATGACGGTTATGAGAAAAGTCAGATTAAAG
ATGATCTTGGTAAGTTTcattctttcaattttgatcGTATGCTATTACCT
TGTAGGAATCATTGATATACACCCTTTATGTCTTTAAACTTTCCACGCTT
TTCTACTTTAAGAGTTattatcaagaaaaaaaacaactacTGCATTCTCT
TAAGTACTCTGAGTTTCATGTCTTTGCGCGACAATCATCAGGTTCTAATA
GAAAAACTTTCGTAAGTGTcgttttcattgtattttctaTAATTTCAGAT
TCATCCAGCCGACTACTTCCTTTCACCATTGGCGACGAAGATTCGGATGA
TCAACCAAGATACCAATGGTatatattcttcaaaatgatacACAATGTCC
AAATCTGTTTCATCCTTTTCTTATCCCTTTTTTTCATGTATTGTATGGTT
TTGTTTGATTTATGGTTACCAATGACTGCAACCGAATATCTCCAATATGG
TGTCACTGAAATCAATTACGTCATTCTTGGATTTGGTGCATGTGCAGTTG
TCCAATTGATCGTGTTTACATTTAGACCCATTCCCCAACATTTACTGATT
TATTTTGCGATGTTTTGTATCGTTGGAATGATGCTAGATTATGCCATCTT
TGTTGTATTGCGACATTTCCATGGCAACCATACTGTAAACATAGTATTAT
TGGCCATTTGGGATTTTTTAGCAGCAAATATCATTGCGATGGAGGAAATA
TTTCTTATAGTAACCCTAGCAACAAAGGTTGGATCACGTGTTCAAACTAC
CACAGAAAGCATCCGATTGGCTTGTTCAAGGACTGGGGCGATTTTAGCTC
TGACGTCAGCAGCGAGTGCTTTTAGTTGGATCACTATAACATGTTCCATT
TGTATTTCTTTATTATTTATCTCCTTAATATTTCTAATTGTAATGCACAA
ACGATTGAGTGAGGAAAGGGTTCTTGTAAGATAGGAAATACTTTTAGCTG
TCTAGTATACAATAAATTTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005490XLOC_005490Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009815-exon-sc0000099-1491911889:373925..374600TCONS_00009815-exon-sc0000099-1491911889:373925..374600Clytia hemisphaericaexon
TCONS_00009815-exon-sc0000099-1510915933:373925..374600TCONS_00009815-exon-sc0000099-1510915933:373925..374600Clytia hemisphaericaexon
TCONS_00009815-exon-sc0000099-1575043694:373925..374600TCONS_00009815-exon-sc0000099-1575043694:373925..374600Clytia hemisphaericaexon
TCONS_00009815-exon-sc0000099-1491911889:375145..375733TCONS_00009815-exon-sc0000099-1491911889:375145..375733Clytia hemisphaericaexon
TCONS_00009815-exon-sc0000099-1510915933:375145..375733TCONS_00009815-exon-sc0000099-1510915933:375145..375733Clytia hemisphaericaexon
TCONS_00009815-exon-sc0000099-1575043694:375145..375733TCONS_00009815-exon-sc0000099-1575043694:375145..375733Clytia hemisphaericaexon
TCONS_00009815-exon-sc0000099-1491911889:375973..376696TCONS_00009815-exon-sc0000099-1491911889:375973..376696Clytia hemisphaericaexon
TCONS_00009815-exon-sc0000099-1510915933:375973..376696TCONS_00009815-exon-sc0000099-1510915933:375973..376696Clytia hemisphaericaexon
TCONS_00009815-exon-sc0000099-1575043694:375973..376696TCONS_00009815-exon-sc0000099-1575043694:375973..376696Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099supercontigsc0000099:373925..376696 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.5414	20.0881	7.09952	4.25168	0	0	0	0	0	0	0	0	0.0153168	0	0	0	0.0833189	0	0	0	0.428774	0.209141	19.5419	14.8865	0.0575665	0	0.965219	1.36798	12.8664	13.3635
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009815 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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