|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009800 ID=TCONS_00009800|Name=TCONS_00009800|organism=Clytia hemisphaerica|type=transcript|length=5105bpRun BLAST on NCBI protein sequence of TCONS_00009800-protein >TCONS_00009800-protein ID=TCONS_00009800-protein|Name=TCONS_00009800-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1096bp MKGFNTIVDYFDHGRVTEERVCLLPKHPLPSPSAFYHNYGGGVELGGIYVRun BLAST on NCBI transcript from alignment at sc0000099:146129..165096+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009800 ID=TCONS_00009800|Name=TCONS_00009800|organism=Clytia hemisphaerica|type=transcript|length=18968bp|location=Sequence derived from alignment at sc0000099:146129..165096+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000099:146129..165096+ >TCONS_00009800 ID=TCONS_00009800|Name=TCONS_00009800|organism=Clytia hemisphaerica|type=CDS|length=49365bp|location=Sequence derived from alignment at sc0000099:146129..165096+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009800 vs. Swiss-Prot (Human)
Match: MPDZ (Multiple PDZ domain protein OS=Homo sapiens GN=MPDZ PE=1 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 1.330e-20 Identity = 82/292 (28.08%), Postives = 130/292 (44.52%), Query Frame = 2
Query: 593 LGGIYVKGLLPGGSADNSRKIVKGDRLLEVNGISVEALSKKQANDQLRKATQVSNFILEHNTVYDNLILPESEF---FTVEIQKKQ-NGYGLSLTGGPEIDGVYVKQVQRDSAAEHDGRIKKGDRLITINGRNVENSTRQQCTSMLKLSQDIVVLHLERCVVG-----------------------------------------DDLPPLDTVLTVVELMKDGT-GFGMSLTGGPEIGG------IFVKALMPEGVAEKDGRVNIGDRVVEMNSSSLDGYTRQQATELLKNS 1312
LG I + + G+A ++ GD++LEVNGI + + +A + LR+ Q L D E E T+E+QKK G GLS+ G GV+V + + A+ DGR+ +GD+++ +NG +V N+T++ ++LK S V L + R G + L L VE+ K T G+S+ GG +G IF+ + P GVA + ++ +GDR+V + +S +G T QA LLKN+
Sbjct: 1651 LGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTL----YRDEAPYKEEEVCDTLTIELQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRIKAGPFHSERRPSQSSQVSEGSLSSFTFPLSGSSTSESLESSSKKNALASEIQGLRTVEMKKGPTDSLGISIAGG--VGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNA 1936 HSP 2 Score: 85.5001 bits (210), Expect = 2.739e-16 Identity = 58/191 (30.37%), Postives = 100/191 (52.36%), Query Frame = 2
Query: 794 ILPESEFFTVEIQKKQNGYGLSLTGGPE--IDGVYVKQVQRDSAAEHDGRIKKGDRLITINGRNVENSTRQQCTSMLKLSQDIVVLHLERCVVGDDLP----PLDTVLTVVELMKDGTGFGMSLTGGPEIGGIFVKALMPEGVAEKDGRVNIGDRVVEMNSSSLDGYTRQQATELLKNSPPKATFILERYK 1348
I+P E T+EI K + G GLS+ GG + + + + +V + AA DGR+ GD+++ +NG ++ +T + ++L+ + V L L R D+ P + LT+ K G G G+S+ G G+FV ++ G+A+ DGR+ GD+++ +N + T++ LLK S T + R K
Sbjct: 1622 IIPGCET-TIEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYR----DEAPYKEEEVCDTLTIELQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRIK 1807 The following BLAST results are available for this feature:
BLAST of TCONS_00009800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.