TCONS_00009787 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009787
Unique NameTCONS_00009787
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length284

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009787 ID=TCONS_00009787|Name=TCONS_00009787|organism=Clytia hemisphaerica|type=transcript|length=284bp
ATCaaccaaaaattaaaacctCAGGAAATGTTATTTGAAACGTGAGTTTT
TCAACAATCAGCTTTTAACAGTGAAAAAGCAAATTAAATCATATTTATAG
TGaaacaaaaagttcaaaatattaaaacagaCCAGAATGGTTATTGTTTA
TGATATCAGAAAGTGCCAGCATCTGAatcaagattttaaaaatttatagt
atttaaaaactgataaaaagaaaaaaatacaaaaaaatacaagttgcaga
gaaaaatgattttctaGAAACGTAAAGTAAAAAA
Run BLAST on NCBI

transcript from alignment at sc0000098:579837..580120

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009787 ID=TCONS_00009787|Name=TCONS_00009787|organism=Clytia hemisphaerica|type=transcript|length=284bp|location=Sequence derived from alignment at sc0000098:579837..580120 (Clytia hemisphaerica)
TTTTTTACTTTACGTTTCtagaaaatcatttttctctgcaacttgtattt
ttttgtatttttttctttttatcagtttttaaatactataaatttttaaa
atcttgatTCAGATGCTGGCACTTTCTGATATCATAAACAATAACCATTC
TGGtctgttttaatattttgaactttttgtttCACTATAAATATGATTTA
ATTTGCTTTTTCACTGTTAAAAGCTGATTGTTGAAAAACTCACGTTTCAA
ATAACATTTCCTGaggttttaatttttggttGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005478XLOC_005478Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009787-exon-sc0000098-1491911889:579837..580120TCONS_00009787-exon-sc0000098-1491911889:579837..580120Clytia hemisphaericaexon
TCONS_00009787-exon-sc0000098-1510915933:579837..580120TCONS_00009787-exon-sc0000098-1510915933:579837..580120Clytia hemisphaericaexon
TCONS_00009787-exon-sc0000098-1575043694:579837..580120TCONS_00009787-exon-sc0000098-1575043694:579837..580120Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:579837..580120 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.520172	0	1.00082	3.01861	0	3.16567	1.9606	1.903	4.69109	2.81074	3.56765	2.66645	0.858452	2.11508	3.61316	0.499177	4.70118	0.454019	0	0	0	1.51251	0.89992	0	0.687178	0	1.59306
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009787 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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