TCONS_00009784 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009784
Unique NameTCONS_00009784
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2980

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009784 ID=TCONS_00009784|Name=TCONS_00009784|organism=Clytia hemisphaerica|type=transcript|length=2980bp
CATGAAATAGGAACTTTTGGGTCATAAAAGTTACACAATTTCTACATATT
TGAGATATAGCAAGTAATTTATATCGTATTTAGCAGATACTAGTGAACAA
AGAATATAAGTTCAATAAGTTTTATTAAGTAGAAAGTTCAGGTTAAAAAT
CTCTGTGCGACGAGTACAAAACGTTTGAAATAACGAGCGAAATAGAATGA
ATGTCCAGGATAAAGCACATGCGAATGGAGAGGTTGGCAAAAAACGAGCG
TAGCTAGTAATGAGTTTTATTCAtcttattcgattttcaaggggaattaa
ATTTCATCCAATAAGGAAGCGTATCAATAAGTAGAgtggctttcaatatt
attgAACAAGGGAGCTCATCGAATGGTAGAGGgttgtttatgagagtttc
tcgttgacggtgactttcaatattagcgaataatggagcgtatcgaatag
tagagggtCGTTTACGAGTTTCTCGtcgacggtgactttcaatattatca
aataagGGAGTATCGATTAgaagagcgtcgtttatgagagtttctcgtTG
ATGATGACTTTCAAAATTATCGAATGATGGATACAAAACTAACTTTCAGA
AAAATCCGCAGATAAATGTTATATAATGAGAAATATTCAACttgctttat
ttttttttccagtgaaaacaaacaaacaaatcacAAAATGAACGTGTCTG
AGAAACAAGCAGCCTTTCTTTACGAAAACGAGCAATATGGGGAGGCCCTT
CATGTCTTCCGACAGCTCCGAGATGTCCAAGTCTCTAAACTCTCACCAAA
AGATCCCGCTATCATTCAAACACAACAAATGATCGGGCGTTGTCTTTACC
GTTGTGGGCGTTACCAAGAGGCGTTACCAGTTTTCCAGGGCGTTGAAGAA
CAATATTCAAGATCGATGCGTCAAAATGGGAAAGAGTTGCTGGAGGCTAA
AAACGATCTCGGGTTGTGTTATTTGGCTCTTGGTGGTTTTAACGAGGCGT
TGAACTGTTTCTTTCAAGTTGATGATGTTTACAAGAAAGAGAAGCCAGAT
TCGGATGAAGAGTATATCACAACCCGCACCAATCTAGCTCTTTGTATGAC
CAACGTTGGAAGAGTTAAAGAGGCTCTGGAAATTTACCAAGAATGCCAGG
AGCAGCAGAGTGCCCTTCTAGGCGCTGAACATCCCGATGTATTGCAGACT
CAGGCTAACATCGCCACCTGTCTTCTACGTACCGGAAAGCATACAGAAGC
TTTGGAATTGTTACAAAAATCAGAGACTAAACAACGAGAGGCGCTTGGTG
AAGGCCACGAGGCGAGTCTGCAGATACGGGCTAATATTGGAAAGTGTTTG
AAGGAAATAGGAAAGTTGGAGGAAGCTATGAAACAAAACGAAGTGCTTGC
AGATGATGTATTGACAAATCTTGGCGATGGCCATCCACTGTTATTTGAAG
TCCAAAACAACCTAATGGTCGTCTACTTAAAACTCGAGAAAAAAGACGAA
GCTATCAAAATTGGTGAGGAATGTTTACAACTACAAGAAAATGCTTTTGG
GGCGGACCATTCAGAACTATTGGACACCTTAATCAATTTGATTGCTTGCT
ATGAAAGTAAAGGAGATTATGAAGCAACATTGGTTTCACAGAAACGCTTA
GAAACCATCTATGGCAAAACCTTTGGTAAAGATAATCCTGAGTTGGCTAA
ATTACGGAACAACATTGCTGGTACATTGGTCAAACTGAAGCGGGGTAACG
AAGCATTAGAGATGTTCGGTAAAATCGAACGTGAATTTGAACGACAATAT
GGTAAGAATCATCCAAGTGTTTTAACCATCAAATCAAATAAAGCAAAAGT
CTACTGTGAGATGGAAAAGTATATTGATGCTTCACGTATTTTGAAAGAAG
TTGAGAATGTAGAACAAGCTAACAAGCTATCCTCCTTGATTACTCGACGA
GAGCTTCTCCGCTGTCTCACAGCTGCTAAACATTTAACGCAAGCTGCCGA
TGTATATGCTAAGCTTGCAGGTAAGGGGCATGAAGATTTCGATCTTGCTT
TGGCTAAGAATAATTATGCAATTGCATTACTTAATGATAGAAAGTTTGAT
AATGCTTTGAAGGTTTTTAAAGAAGTTGAAATTATTATGGAAGGAATGAA
GATGCCATCAAACCACCCTGCCTTGCTtaacacaaaacaaaacatcgGTA
CTACTTATCAACAGTTGGGTAAGCGAGATGAGGCTGGAAAACTTTTCGCA
TATGTCAAAGAAATGAGGGAAGGAAAATAAAGACGTTGAGATTACAGTCG
AATTGGAATGCTTTGTAAACGTTTTATGGACTTGTATGGGTGGAGACGAG
ACTACATTGACGCTCCTGGAAGAGTACATGAGCTTCTGTGAAGATGATAA
AGACTTCATGATTAATGGCAAATAACTGATAAACgacaaacattttcttc
aaaatagaCCAAATGATAattcaaaacaatggaaaacgAGACATTAAAAC
ACATTATGAATAAGCACagtatttattttaaagatgCACTTGATTTGCTA
TATCATATATCTATTACTTTTAGATTCTTTAATTGACTTCTCTATATAGC
TAAAAGTGAAGTTGAAGCATTAGTTTGTTTACTTATCATACACCTTAAGG
AAACTAAAATTTGCCAACATTTCAATGCCCCGCCAAAATCAGTTCtcgcc
aaaatcaaaaaattgcattactcgccaaaataagttccctaaTGATATTT
GACTTAGGTAAAAGTTTTCCCCGGTAATTTAATTATCTTTTGTAAGTAAA
TTTGAATATCACAAATAGTATTTATACACTGATATAAATTATAGGGtctt
tatattttattatttcaaagaaatttagtTAATAAAATGGTTATTTTGTC
CATGAACATTGGGTTAGTGTCACAAACTTTGTACCTTTATTAAGTGACCA
TCTTTGTTATAAGattgcaaaattcaaaaa
Run BLAST on NCBI

protein sequence of TCONS_00009784-protein

>TCONS_00009784-protein ID=TCONS_00009784-protein|Name=TCONS_00009784-protein|organism=Clytia hemisphaerica|type=polypeptide|length=554bp
MLYNEKYSTCFIFFSSENKQTNHKMNVSEKQAAFLYENEQYGEALHVFRQ
LRDVQVSKLSPKDPAIIQTQQMIGRCLYRCGRYQEALPVFQGVEEQYSRS
MRQNGKELLEAKNDLGLCYLALGGFNEALNCFFQVDDVYKKEKPDSDEEY
ITTRTNLALCMTNVGRVKEALEIYQECQEQQSALLGAEHPDVLQTQANIA
TCLLRTGKHTEALELLQKSETKQREALGEGHEASLQIRANIGKCLKEIGK
LEEAMKQNEVLADDVLTNLGDGHPLLFEVQNNLMVVYLKLEKKDEAIKIG
EECLQLQENAFGADHSELLDTLINLIACYESKGDYEATLVSQKRLETIYG
KTFGKDNPELAKLRNNIAGTLVKLKRGNEALEMFGKIEREFERQYGKNHP
SVLTIKSNKAKVYCEMEKYIDASRILKEVENVEQANKLSSLITRRELLRC
LTAAKHLTQAADVYAKLAGKGHEDFDLALAKNNYAIALLNDRKFDNALKV
FKEVEIIMEGMKMPSNHPALLNTKQNIGTTYQQLGKRDEAGKLFAYVKEM
REGK
Run BLAST on NCBI

transcript from alignment at sc0000098:473674..476653

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009784 ID=TCONS_00009784|Name=TCONS_00009784|organism=Clytia hemisphaerica|type=transcript|length=2980bp|location=Sequence derived from alignment at sc0000098:473674..476653 (Clytia hemisphaerica)
tttttgaattttgcaatCTTATAACAAAGATGGTCACTTAATAAAGGTAC
AAAGTTTGTGACACTAACCCAATGTTCATGGACAAAATAACCATTTTATT
AactaaatttctttgaaataataaaatataaagaCCCTATAATTTATATC
AGTGTATAAATACTATTTGTGATATTCAAATTTACTTACAAAAGATAATT
AAATTACCGGGGAAAACTTTTACCTAAGTCAAATATCAttagggaactta
ttttggcgagtaatgcaattttttgattttggcgaGAACTGATTTTGGCG
GGGCATTGAAATGTTGGCAAATTTTAGTTTCCTTAAGGTGTATGATAAGT
AAACAAACTAATGCTTCAACTTCACTTTTAGCTATATAGAGAAGTCAATT
AAAGAATCTAAAAGTAATAGATATATGATATAGCAAATCAAGTGcatctt
taaaataaatactGTGCTTATTCATAATGTGTTTTAATGTCTcgttttcc
attgttttgaatTATCATTTGGtctattttgaagaaaatgtttgtcGTTT
ATCAGTTATTTGCCATTAATCATGAAGTCTTTATCATCTTCACAGAAGCT
CATGTACTCTTCCAGGAGCGTCAATGTAGTCTCGTCTCCACCCATACAAG
TCCATAAAACGTTTACAAAGCATTCCAATTCGACTGTAATCTCAACGTCT
TTATTTTCCTTCCCTCATTTCTTTGACATATGCGAAAAGTTTTCCAGCCT
CATCTCGCTTACCCAACTGTTGATAAGTAGTACcgatgttttgttttgtg
ttaAGCAAGGCAGGGTGGTTTGATGGCATCTTCATTCCTTCCATAATAAT
TTCAACTTCTTTAAAAACCTTCAAAGCATTATCAAACTTTCTATCATTAA
GTAATGCAATTGCATAATTATTCTTAGCCAAAGCAAGATCGAAATCTTCA
TGCCCCTTACCTGCAAGCTTAGCATATACATCGGCAGCTTGCGTTAAATG
TTTAGCAGCTGTGAGACAGCGGAGAAGCTCTCGTCGAGTAATCAAGGAGG
ATAGCTTGTTAGCTTGTTCTACATTCTCAACTTCTTTCAAAATACGTGAA
GCATCAATATACTTTTCCATCTCACAGTAGACTTTTGCTTTATTTGATTT
GATGGTTAAAACACTTGGATGATTCTTACCATATTGTCGTTCAAATTCAC
GTTCGATTTTACCGAACATCTCTAATGCTTCGTTACCCCGCTTCAGTTTG
ACCAATGTACCAGCAATGTTGTTCCGTAATTTAGCCAACTCAGGATTATC
TTTACCAAAGGTTTTGCCATAGATGGTTTCTAAGCGTTTCTGTGAAACCA
ATGTTGCTTCATAATCTCCTTTACTTTCATAGCAAGCAATCAAATTGATT
AAGGTGTCCAATAGTTCTGAATGGTCCGCCCCAAAAGCATTTTCTTGTAG
TTGTAAACATTCCTCACCAATTTTGATAGCTTCGTCTTTTTTCTCGAGTT
TTAAGTAGACGACCATTAGGTTGTTTTGGACTTCAAATAACAGTGGATGG
CCATCGCCAAGATTTGTCAATACATCATCTGCAAGCACTTCGTTTTGTTT
CATAGCTTCCTCCAACTTTCCTATTTCCTTCAAACACTTTCCAATATTAG
CCCGTATCTGCAGACTCGCCTCGTGGCCTTCACCAAGCGCCTCTCGTTGT
TTAGTCTCTGATTTTTGTAACAATTCCAAAGCTTCTGTATGCTTTCCGGT
ACGTAGAAGACAGGTGGCGATGTTAGCCTGAGTCTGCAATACATCGGGAT
GTTCAGCGCCTAGAAGGGCACTCTGCTGCTCCTGGCATTCTTGGTAAATT
TCCAGAGCCTCTTTAACTCTTCCAACGTTGGTCATACAAAGAGCTAGATT
GGTGCGGGTTGTGATATACTCTTCATCCGAATCTGGCTTCTCTTTCTTGT
AAACATCATCAACTTGAAAGAAACAGTTCAACGCCTCGTTAAAACCACCA
AGAGCCAAATAACACAACCCGAGATCGTTTTTAGCCTCCAGCAACTCTTT
CCCATTTTGACGCATCGATCTTGAATATTGTTCTTCAACGCCCTGGAAAA
CTGGTAACGCCTCTTGGTAACGCCCACAACGGTAAAGACAACGCCCGATC
ATTTGTTGTGTTTGAATGATAGCGGGATCTTTTGGTGAGAGTTTAGAGAC
TTGGACATCTCGGAGCTGTCGGAAGACATGAAGGGCCTCCCCATATTGCT
CGTTTTCGTAAAGAAAGGCTGCTTGTTTCTCAGACACGTTCATTTTgtga
tttgtttgtttgttttcactggaaaaaaaaataaagcaaGTTGAATATTT
CTCATTATATAACATTTATCTGCGGATTTTTCTGAAAGTTAGTTTTGTAT
CCATCATTCGATAATTTTGAAAGTCATCATCAacgagaaactctcataaa
cgacgctcttcTAATCGATACTCCcttatttgataatattgaaagtcacc
gtcgaCGAGAAACTCGTAAACGaccctctactattcgatacgctccatta
ttcgctaatattgaaagtcaccgtcaacgagaaactctcataaacaacCC
TCTACCATTCGATGAGCTCCCTTGTTcaataatattgaaagccacTCTAC
TTATTGATACGCTTCCTTATTGGATGAAATttaattccccttgaaaatcg
aataagaTGAATAAAACTCATTACTAGCTACGCTCGTTTTTTGCCAACCT
CTCCATTCGCATGTGCTTTATCCTGGACATTCATTCTATTTCGCTCGTTA
TTTCAAACGTTTTGTACTCGTCGCACAGAGATTTTTAACCTGAACTTTCT
ACTTAATAAAACTTATTGAACTTATATTCTTTGTTCACTAGTATCTGCTA
AATACGATATAAATTACTTGCTATATCTCAAATATGTAGAAATTGTGTAA
CTTTTATGACCCAAAAGTTCCTATTTCATG

Coding sequence (CDS) from alignment at sc0000098:473674..476653

>TCONS_00009784 ID=TCONS_00009784|Name=TCONS_00009784|organism=Clytia hemisphaerica|type=CDS|length=1665bp|location=Sequence derived from alignment at sc0000098:473674..476653 (Clytia hemisphaerica)
TTATTTTCCTTCCCTCATTTCTTTGACATATGCGAAAAGTTTTCCAGCCT
CATCTCGCTTACCCAACTGTTGATAAGTAGTACcgatgttttgttttgtg
ttaAGCAAGGCAGGGTGGTTTGATGGCATCTTCATTCCTTCCATAATAAT
TTCAACTTCTTTAAAAACCTTCAAAGCATTATCAAACTTTCTATCATTAA
GTAATGCAATTGCATAATTATTCTTAGCCAAAGCAAGATCGAAATCTTCA
TGCCCCTTACCTGCAAGCTTAGCATATACATCGGCAGCTTGCGTTAAATG
TTTAGCAGCTGTGAGACAGCGGAGAAGCTCTCGTCGAGTAATCAAGGAGG
ATAGCTTGTTAGCTTGTTCTACATTCTCAACTTCTTTCAAAATACGTGAA
GCATCAATATACTTTTCCATCTCACAGTAGACTTTTGCTTTATTTGATTT
GATGGTTAAAACACTTGGATGATTCTTACCATATTGTCGTTCAAATTCAC
GTTCGATTTTACCGAACATCTCTAATGCTTCGTTACCCCGCTTCAGTTTG
ACCAATGTACCAGCAATGTTGTTCCGTAATTTAGCCAACTCAGGATTATC
TTTACCAAAGGTTTTGCCATAGATGGTTTCTAAGCGTTTCTGTGAAACCA
ATGTTGCTTCATAATCTCCTTTACTTTCATAGCAAGCAATCAAATTGATT
AAGGTGTCCAATAGTTCTGAATGGTCCGCCCCAAAAGCATTTTCTTGTAG
TTGTAAACATTCCTCACCAATTTTGATAGCTTCGTCTTTTTTCTCGAGTT
TTAAGTAGACGACCATTAGGTTGTTTTGGACTTCAAATAACAGTGGATGG
CCATCGCCAAGATTTGTCAATACATCATCTGCAAGCACTTCGTTTTGTTT
CATAGCTTCCTCCAACTTTCCTATTTCCTTCAAACACTTTCCAATATTAG
CCCGTATCTGCAGACTCGCCTCGTGGCCTTCACCAAGCGCCTCTCGTTGT
TTAGTCTCTGATTTTTGTAACAATTCCAAAGCTTCTGTATGCTTTCCGGT
ACGTAGAAGACAGGTGGCGATGTTAGCCTGAGTCTGCAATACATCGGGAT
GTTCAGCGCCTAGAAGGGCACTCTGCTGCTCCTGGCATTCTTGGTAAATT
TCCAGAGCCTCTTTAACTCTTCCAACGTTGGTCATACAAAGAGCTAGATT
GGTGCGGGTTGTGATATACTCTTCATCCGAATCTGGCTTCTCTTTCTTGT
AAACATCATCAACTTGAAAGAAACAGTTCAACGCCTCGTTAAAACCACCA
AGAGCCAAATAACACAACCCGAGATCGTTTTTAGCCTCCAGCAACTCTTT
CCCATTTTGACGCATCGATCTTGAATATTGTTCTTCAACGCCCTGGAAAA
CTGGTAACGCCTCTTGGTAACGCCCACAACGGTAAAGACAACGCCCGATC
ATTTGTTGTGTTTGAATGATAGCGGGATCTTTTGGTGAGAGTTTAGAGAC
TTGGACATCTCGGAGCTGTCGGAAGACATGAAGGGCCTCCCCATATTGCT
CGTTTTCGTAAAGAAAGGCTGCTTGTTTCTCAGACACGTTCATTTTgtga
tttgtttgtttgttttcactggaaaaaaaaataaagcaaGTTGAATATTT
CTCATTATATAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005475XLOC_005475Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009784-proteinTCONS_00009784-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009784-exon-sc0000098-1491911889:473674..476653TCONS_00009784-exon-sc0000098-1491911889:473674..476653Clytia hemisphaericaexon
TCONS_00009784-exon-sc0000098-1510915933:473674..476653TCONS_00009784-exon-sc0000098-1510915933:473674..476653Clytia hemisphaericaexon
TCONS_00009784-exon-sc0000098-1575043694:473674..476653TCONS_00009784-exon-sc0000098-1575043694:473674..476653Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:473674..476653 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.332884	0.212248	0.507376	0.456344	3.91935	3.32907	2.00819	2.66596	2.35201	2.2986	1.59548	1.79064	45.4702	29.2966	37.6736	18.5062	25.2874	48.764	36.4887	55.3872	18.7169	18.1321	29.6094	25.3177	11.6018	13.5441	195.255	208.888	351.726	439.244
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011991WHTH_DNA-bd_dom
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009784 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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