TCONS_00009783 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009783
Unique NameTCONS_00009783
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length390

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009783 ID=TCONS_00009783|Name=TCONS_00009783|organism=Clytia hemisphaerica|type=transcript|length=390bp
TATAAAGGTTCTGTGCAAAATCTCATTAATCGATTAAAAAAAAGCGGGAC
CATGGACAGAAAACCCGGCTCCGGCCGCCCAATAACTGTAACAACCGCAG
AAAACGAAGAAATTGTTGAGCAACTGATTTGCTCGCAGGAAGAATCACCT
GGAACACACAAATCACTGCGAGAGATTGAAAAGATAACGGGAATAAAGAG
ATTGTCAGTGCGAAGAATGGTGAAACGAAATGGATGGAAGCAGTATAAAA
GAATCAAGACCCCGAGAGTTACCGAAGGAAGAAAGAAACGACGAACGGAA
AGATCTGGTGCTTTGGCTGAACGGTTTTCCCACAAAAGAAGCGTAGAGAA
GTGTGTGTTCCAAGACGAGAAAGACTTTACTCTTGATGTA
Run BLAST on NCBI

protein sequence of TCONS_00009783-protein

>TCONS_00009783-protein ID=TCONS_00009783-protein|Name=TCONS_00009783-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
YKGSVQNLINRLKKSGTMDRKPGSGRPITVTTAENEEIVEQLICSQEESP
GTHKSLREIEKITGIKRLSVRRMVKRNGWKQYKRIKTPRVTEGRKKRRTE
RSGALAERFSHKRSVEKCVFQDEKDFTLDV
Run BLAST on NCBI

transcript from alignment at sc0000098:453775..454164

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009783 ID=TCONS_00009783|Name=TCONS_00009783|organism=Clytia hemisphaerica|type=transcript|length=390bp|location=Sequence derived from alignment at sc0000098:453775..454164 (Clytia hemisphaerica)
TACATCAAGAGTAAAGTCTTTCTCGTCTTGGAACACACACTTCTCTACGC
TTCTTTTGTGGGAAAACCGTTCAGCCAAAGCACCAGATCTTTCCGTTCGT
CGTTTCTTTCTTCCTTCGGTAACTCTCGGGGTCTTGATTCTTTTATACTG
CTTCCATCCATTTCGTTTCACCATTCTTCGCACTGACAATCTCTTTATTC
CCGTTATCTTTTCAATCTCTCGCAGTGATTTGTGTGTTCCAGGTGATTCT
TCCTGCGAGCAAATCAGTTGCTCAACAATTTCTTCGTTTTCTGCGGTTGT
TACAGTTATTGGGCGGCCGGAGCCGGGTTTTCTGTCCATGGTCCCGCTTT
TTTTTAATCGATTAATGAGATTTTGCACAGAACCTTTATA

Coding sequence (CDS) from alignment at sc0000098:453775..454164

>TCONS_00009783 ID=TCONS_00009783|Name=TCONS_00009783|organism=Clytia hemisphaerica|type=CDS|length=390bp|location=Sequence derived from alignment at sc0000098:453775..454164 (Clytia hemisphaerica)
TACATCAAGAGTAAAGTCTTTCTCGTCTTGGAACACACACTTCTCTACGC
TTCTTTTGTGGGAAAACCGTTCAGCCAAAGCACCAGATCTTTCCGTTCGT
CGTTTCTTTCTTCCTTCGGTAACTCTCGGGGTCTTGATTCTTTTATACTG
CTTCCATCCATTTCGTTTCACCATTCTTCGCACTGACAATCTCTTTATTC
CCGTTATCTTTTCAATCTCTCGCAGTGATTTGTGTGTTCCAGGTGATTCT
TCCTGCGAGCAAATCAGTTGCTCAACAATTTCTTCGTTTTCTGCGGTTGT
TACAGTTATTGGGCGGCCGGAGCCGGGTTTTCTGTCCATGGTCCCGCTTT
TTTTTAATCGATTAATGAGATTTTGCACAGAACCTTTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005474XLOC_005474Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009783-exon-sc0000098-1491911889:453775..454164TCONS_00009783-exon-sc0000098-1491911889:453775..454164Clytia hemisphaericaexon
TCONS_00009783-exon-sc0000098-1510915933:453775..454164TCONS_00009783-exon-sc0000098-1510915933:453775..454164Clytia hemisphaericaexon
TCONS_00009783-exon-sc0000098-1575043694:453775..454164TCONS_00009783-exon-sc0000098-1575043694:453775..454164Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009783-proteinTCONS_00009783-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:453775..454164 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.926032	0.960014	2.40119	3.59037	0.65913	0	0.327233	0	0	0	1.54716	0.80002	0	0.412107	0	0.196999	0	0	0	0	0.831223	0.719668	0	0	9.82623	4.1178	0	0	1.18455	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009783 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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