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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009779 ID=TCONS_00009779|Name=TCONS_00009779|organism=Clytia hemisphaerica|type=transcript|length=1182bp
ACCTTGATGATgcatcaacattttcatttttggtattTATAATCTGTTCA
TTTATTCTGGCAGAGAATCTTGTACGAATATTTGGatcgaaaagtttttt
cagatcaATTCTCTTTTTGGGCGGGGTAGGGTTTTTGCAATATCGTTTTC
TTGCGTTTCTGGTGGAAGGAGCGTACATAGTAGCTTTTATAAAGGCGGTG
ATCGGTTTCGACATCAAAACCATTGTAGACACGACAATCTGTCATAAACT
GTTGAACATATTGTTCGGTTAAAATATAGTCAAGTATTTTTCGGGTTTTA
TGGTCGTTACTGTGCCAAGTGTAGCGATGGAACAGACGGTGTTTGAAAAA
CGTCGAAGAAATACTGAGTTTCTCAGCTTGGCATAATTGTTTGAGTCGCT
GGCCATTATCATTACAGTTTCGATCTATTATTACATTTGTGTTTCCGCTG
AAATTACTTTTGAATTTTGCAACATTGGTTGTGGCGTTGAAGTCTCCAGC
AATAATCAGTTTTTGGTGTTTCTGTTGCTTTTTGCTGGCTTTCTTGAGAT
CGGAGTAGAATTTGTTCTTTTGCTCATCTGTACCGTCACAGTCTGTGGGC
GAATAAACATTTACAACACGAAGGTTGAAACCATGTATTTTAAGGTTGAC
TCCCATAATACGTGGAGTGTTGAAATCTGGGGCTTCAATTTCGGTAAACT
TATCAATTCTAATCAATATACCGACACCAGCTTCACGTTTTCGTTTGTAG
CCCGACCAATGGAATTCATATTTTTCTCCAGTGTCAAGTTCAATTAATTT
ACTATCGACACCTTTCCATCTGACTTCTTGAAGTGAAAGAAATTGTAGGC
CTGTTTTTGACATTTCTTTGGCGACCGAATATATTTTGGCTCCGTCATCG
TTTTCTTTCCCGGTACGAATATTAAGTGATCCAAAGCTCCATTCGCAgta
ttgatgaaattttttggtgtttttctttttgtaatttttttgttggTTCA
TTTTGAAGAAGTGATTTAAGTCGTAGAGATGAGAAGCAAAGGATTTGCTT
TGTAGGGTATGAAGGACAGTAAGGTACTCTTTCGCTCGGTGATAGATTCA
CTTGGTAGCTGTACTAAGGCTTCCTTGAAGCGAGATTGGTGAGTTAAGCC
GCGCTGGACACCATCCCAGAATTTGACCTCCG Run BLAST on NCBI protein sequence of TCONS_00009779-protein >TCONS_00009779-protein ID=TCONS_00009779-protein|Name=TCONS_00009779-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
MNQQKNYKKKNTKKFHQYCEWSFGSLNIRTGKENDDGAKIYSVAKEMSKT
GLQFLSLQEVRWKGVDSKLIELDTGEKYEFHWSGYKRKREAGVGILIRID
KFTEIEAPDFNTPRIMGVNLKIHGFNLRVVNVYSPTDCDGTDEQKNKFYS
DLKKASKKQQKHQKLIIAGDFNATTNVAKFKSNFSGNTNVIIDRNCNDNG
QRLKQLCQAEKLSISSTFFKHRLFHRYTWHSNDHKTRKILDYILTEQYVQ
QFMTDCRVYNGFDVETDHRLYKSYYVRSFHQKRKKTILQKPYPAQKEN Run BLAST on NCBI transcript from alignment at sc0000098:436129..437310 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009779 ID=TCONS_00009779|Name=TCONS_00009779|organism=Clytia hemisphaerica|type=transcript|length=1182bp|location=Sequence derived from alignment at sc0000098:436129..437310 (Clytia hemisphaerica)
CGGAGGTCAAATTCTGGGATGGTGTCCAGCGCGGCTTAACTCACCAATCT
CGCTTCAAGGAAGCCTTAGTACAGCTACCAAGTGAATCTATCACCGAGCG
AAAGAGTACCTTACTGTCCTTCATACCCTACAAAGCAAATCCTTTGCTTC
TCATCTCTACGACTTAAATCACTTCTTCAAAATGAAccaacaaaaaaatt
acaaaaagaaaaacaccaaaaaatttcatcaatacTGCGAATGGAGCTTT
GGATCACTTAATATTCGTACCGGGAAAGAAAACGATGACGGAGCCAAAAT
ATATTCGGTCGCCAAAGAAATGTCAAAAACAGGCCTACAATTTCTTTCAC
TTCAAGAAGTCAGATGGAAAGGTGTCGATAGTAAATTAATTGAACTTGAC
ACTGGAGAAAAATATGAATTCCATTGGTCGGGCTACAAACGAAAACGTGA
AGCTGGTGTCGGTATATTGATTAGAATTGATAAGTTTACCGAAATTGAAG
CCCCAGATTTCAACACTCCACGTATTATGGGAGTCAACCTTAAAATACAT
GGTTTCAACCTTCGTGTTGTAAATGTTTATTCGCCCACAGACTGTGACGG
TACAGATGAGCAAAAGAACAAATTCTACTCCGATCTCAAGAAAGCCAGCA
AAAAGCAACAGAAACACCAAAAACTGATTATTGCTGGAGACTTCAACGCC
ACAACCAATGTTGCAAAATTCAAAAGTAATTTCAGCGGAAACACAAATGT
AATAATAGATCGAAACTGTAATGATAATGGCCAGCGACTCAAACAATTAT
GCCAAGCTGAGAAACTCAGTATTTCTTCGACGTTTTTCAAACACCGTCTG
TTCCATCGCTACACTTGGCACAGTAACGACCATAAAACCCGAAAAATACT
TGACTATATTTTAACCGAACAATATGTTCAACAGTTTATGACAGATTGTC
GTGTCTACAATGGTTTTGATGTCGAAACCGATCACCGCCTTTATAAAAGC
TACTATGTACGCTCCTTCCACCAGAAACGCAAGAAAACGATATTGCAAAA
ACCCTACCCCGCCCAAAAAGAGAATtgatctgaaaaaacttttcgatCCA
AATATTCGTACAAGATTCTCTGCCAGAATAAATGAACAGATTATAaatac
caaaaatgaaaatgttgatgcATCATCAAGGT Coding sequence (CDS) from alignment at sc0000098:436129..437310 >TCONS_00009779 ID=TCONS_00009779|Name=TCONS_00009779|organism=Clytia hemisphaerica|type=CDS|length=897bp|location=Sequence derived from alignment at sc0000098:436129..437310 (Clytia hemisphaerica)
ATGAAccaacaaaaaaattacaaaaagaaaaacaccaaaaaatttcatca
atacTGCGAATGGAGCTTTGGATCACTTAATATTCGTACCGGGAAAGAAA
ACGATGACGGAGCCAAAATATATTCGGTCGCCAAAGAAATGTCAAAAACA
GGCCTACAATTTCTTTCACTTCAAGAAGTCAGATGGAAAGGTGTCGATAG
TAAATTAATTGAACTTGACACTGGAGAAAAATATGAATTCCATTGGTCGG
GCTACAAACGAAAACGTGAAGCTGGTGTCGGTATATTGATTAGAATTGAT
AAGTTTACCGAAATTGAAGCCCCAGATTTCAACACTCCACGTATTATGGG
AGTCAACCTTAAAATACATGGTTTCAACCTTCGTGTTGTAAATGTTTATT
CGCCCACAGACTGTGACGGTACAGATGAGCAAAAGAACAAATTCTACTCC
GATCTCAAGAAAGCCAGCAAAAAGCAACAGAAACACCAAAAACTGATTAT
TGCTGGAGACTTCAACGCCACAACCAATGTTGCAAAATTCAAAAGTAATT
TCAGCGGAAACACAAATGTAATAATAGATCGAAACTGTAATGATAATGGC
CAGCGACTCAAACAATTATGCCAAGCTGAGAAACTCAGTATTTCTTCGAC
GTTTTTCAAACACCGTCTGTTCCATCGCTACACTTGGCACAGTAACGACC
ATAAAACCCGAAAAATACTTGACTATATTTTAACCGAACAATATGTTCAA
CAGTTTATGACAGATTGTCGTGTCTACAATGGTTTTGATGTCGAAACCGA
TCACCGCCTTTATAAAAGCTACTATGTACGCTCCTTCCACCAGAAACGCA
AGAAAACGATATTGCAAAAACCCTACCCCGCCCAAAAAGAGAATtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009779-exon-sc0000098-1491911889:436129..437310 | TCONS_00009779-exon-sc0000098-1491911889:436129..437310 | Clytia hemisphaerica | exon |
| TCONS_00009779-exon-sc0000098-1510915933:436129..437310 | TCONS_00009779-exon-sc0000098-1510915933:436129..437310 | Clytia hemisphaerica | exon |
| TCONS_00009779-exon-sc0000098-1575043694:436129..437310 | TCONS_00009779-exon-sc0000098-1575043694:436129..437310 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000098 | supercontig | sc0000098:436129..437310 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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