TCONS_00009778 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009778
Unique NameTCONS_00009778
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length441

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009778 ID=TCONS_00009778|Name=TCONS_00009778|organism=Clytia hemisphaerica|type=transcript|length=441bp
ACGCGATAGTCTGAAGTTACTTTCCCGATATCGTCAGCATACTCCATTTC
AAtatcgatttgttctttttctgTGACAATGGCGTAAATGTGGTCTGTTA
GATGGTCAGCAGGAATGGATGGTACAGTAGGAAGTGCATCAGGATGGTTG
GGTATTTGGTGGTTTTTCAGCGGGTGTAGTGCTTTTGCTAGGTAGTACGT
AAATTCGTTAGCACTTACACATTCTCCTTGTGGTGCTTCCGGTGTCAGTT
GCGAACTCAGAGCTTAGAGTTTGGTTGCATTTGACACTGAGCGATACATT
AAGGAGGACTGCGATAATGTGGAGTTTGTCTGGTGAGATGGTAGATTGCA
AGTCATGCAGCAGTTTGTTTCTATTAAGACTGTCGAACGCTTTGCTCATA
TCAAGAAGTATTAAGTGAACGGCTTCACATTTTGATGTTAT
Run BLAST on NCBI

transcript from alignment at sc0000098:405939..406379

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009778 ID=TCONS_00009778|Name=TCONS_00009778|organism=Clytia hemisphaerica|type=transcript|length=441bp|location=Sequence derived from alignment at sc0000098:405939..406379 (Clytia hemisphaerica)
ATAACATCAAAATGTGAAGCCGTTCACTTAATACTTCTTGATATGAGCAA
AGCGTTCGACAGTCTTAATAGAAACAAACTGCTGCATGACTTGCAATCTA
CCATCTCACCAGACAAACTCCACATTATCGCAGTCCTCCTTAATGTATCG
CTCAGTGTCAAATGCAACCAAACTCTAAGCTCTGAGTTCGCAACTGACAC
CGGAAGCACCACAAGGAGAATGTGTAAGTGCTAACGAATTTACGTACTAC
CTAGCAAAAGCACTACACCCGCTGAAAAACCACCAAATACCCAACCATCC
TGATGCACTTCCTACTGTACCATCCATTCCTGCTGACCATCTAACAGACC
ACATTTACGCCATTGTCAcagaaaaagaacaaatcgataTTGAAATGGAG
TATGCTGACGATATCGGGAAAGTAACTTCAGACTATCGCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005469XLOC_005469Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009778-exon-sc0000098-1491911889:405939..406379TCONS_00009778-exon-sc0000098-1491911889:405939..406379Clytia hemisphaericaexon
TCONS_00009778-exon-sc0000098-1510915933:405939..406379TCONS_00009778-exon-sc0000098-1510915933:405939..406379Clytia hemisphaericaexon
TCONS_00009778-exon-sc0000098-1575043694:405939..406379TCONS_00009778-exon-sc0000098-1575043694:405939..406379Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:405939..406379 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.13893	0.715131	1.08693	0.934997	4.05895	4.80879	3.64852	4.88492	3.43965	2.7646	2.25922	2.93057	2.85965	1.78327	0.342547	1.27289	1.16609	1.17424	0.402659	0.965916	1.73903	1.27952	0.694534	1.02519	0.492554	1.02572	0.360761	0	0.436876	0.400634
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009778 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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