TCONS_00009777 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009777
Unique NameTCONS_00009777
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1332

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009777 ID=TCONS_00009777|Name=TCONS_00009777|organism=Clytia hemisphaerica|type=transcript|length=1332bp
ttatGCTAAAGTAATGAGTTATTCAATAGACTTCAACGCCAAATGGTATA
GAACTTCGGTGCAACCTATCAATACCATGtatatatgtttttatttttat
ttacagaataataataaaaaaaaaacagaatacaaaaagtataaaataag
aataaataaCATCGTCAAATGACCATCAACAAATTGTGTATGGAATCTTG
ATTCGTTAACATTTTGGTTGTATTGGATTTTCCAACATGTTGCTCATCTT
AACCGACGAACAAAAACAACACTTAACATTGGTGAATCAAGTAGACGCTA
CTGTTGCCAAAGAATTTTGTCGCATCGCTGCTGAATTTATACAAAATGGA
ATCAACACCAAGAAATACCAAATGGCTGCACAAAAACTTGAATTAGATGC
CAAATTAATTGCTCAATGTGTCGAGGCCATTATGTATTTACTTTCAGAAT
CTTCGAAAATGTTCTTAGTGGAAACTGACTTTAAAGATTCGTTGTTAAGT
CTAGATTTAGATGAGGATGTTTTTAACACGCTTGTTGAGTTTTACGAAAA
TAACAAACAAGATATTCGAAAGATTTTATCTAAAATGGAATTATCTTTAC
CGCAGTATAAGAACTTAGAATGGCGTTTTGATGTACAGTTAGCTACGCGC
ATGCTTACTTATCAGACGACACCACAAGTGATGTTAAAGCTTCATCTCAA
CAAAGGGCCTGGGGAGAATGACGTCACTGTTTTGCAGACAGATCCAGTGA
ACTTAGTACATATGACACAAGTTTTAGAAGAAGcattaaatgaaattaaa
acagCACACTGTCGAAGAATTGCACGCAATATTAAATGATATATTTTCAG
ATTTCTTACCTTTATTTTAGTTCTCATTGAAGATAAGGAAAATCGTCTGA
TATGGAAATCCTcacaagtttttgacttttagtaaaaaataatagaatct
caacgtaagaaccgtgtgAGAACccaatttcagaaatttcaaattgtgat
ctctcgactttggaaaatagttatcAAAACATACTTGGAGGTTTTACTCA
AGCCCACATAAGCTTTCTGTtaggccaaatatctcaaaccatctgattat
ccctttaatttTAGAGTTAtcataattttaattttctctgaatTTCTACT
CAatcttgtacactttttttacatacagtatgtggccACCAAAACGGCgg
tcaaatttgaaatttctctcaaatctagaggaaaacagatctttttttaa
attttcaatttcaacaatatttttcaatcgcttaaagataggtaactttt
ttctaatggcccccaaaacggaggtttgcaat
Run BLAST on NCBI

protein sequence of TCONS_00009777-protein

>TCONS_00009777-protein ID=TCONS_00009777-protein|Name=TCONS_00009777-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MLLILTDEQKQHLTLVNQVDATVAKEFCRIAAEFIQNGINTKKYQMAAQK
LELDAKLIAQCVEAIMYLLSESSKMFLVETDFKDSLLSLDLDEDVFNTLV
EFYENNKQDIRKILSKMELSLPQYKNLEWRFDVQLATRMLTYQTTPQVML
KLHLNKGPGENDVTVLQTDPVNLVHMTQVLEEALNEIKTAHCRRIARNIK
Run BLAST on NCBI

transcript from alignment at sc0000098:383934..385265

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009777 ID=TCONS_00009777|Name=TCONS_00009777|organism=Clytia hemisphaerica|type=transcript|length=1332bp|location=Sequence derived from alignment at sc0000098:383934..385265 (Clytia hemisphaerica)
attgcaaacctccgttttgggggccattagaaaaaagttacctatcttta
agcgattgaaaaatattgttgaaattgaaaatttaaaaaaagatctgttt
tcctctagatttgagagaaatttcaaatttgaccGCCGTTTTGGTggcca
catactgtatgtaaaaaaagtgtacaagatTGAGTAGAAattcagagaaa
attaaaattatgaTAACTCTAaaattaaagggataatcagatggtttgag
atatttggcctaACAGAAAGCTTATGTGGGCTTGAGTAAAACCTCCAAGT
ATGTTTTgataactattttccaaagtcgagagatcacaatttgaaatttc
tgaaattggGTTCTcacacggttcttacgttgagattctattatttttta
ctaaaagtcaaaaacttgtgAGGATTTCCATATCAGACGATTTTCCTTAT
CTTCAATGAGAACTAAAATAAAGGTAAGAAATCTGAAAATATATCATTTA
ATATTGCGTGCAATTCTTCGACAGTGTGctgttttaatttcatttaatgC
TTCTTCTAAAACTTGTGTCATATGTACTAAGTTCACTGGATCTGTCTGCA
AAACAGTGACGTCATTCTCCCCAGGCCCTTTGTTGAGATGAAGCTTTAAC
ATCACTTGTGGTGTCGTCTGATAAGTAAGCATGCGCGTAGCTAACTGTAC
ATCAAAACGCCATTCTAAGTTCTTATACTGCGGTAAAGATAATTCCATTT
TAGATAAAATCTTTCGAATATCTTGTTTGTTATTTTCGTAAAACTCAACA
AGCGTGTTAAAAACATCCTCATCTAAATCTAGACTTAACAACGAATCTTT
AAAGTCAGTTTCCACTAAGAACATTTTCGAAGATTCTGAAAGTAAATACA
TAATGGCCTCGACACATTGAGCAATTAATTTGGCATCTAATTCAAGTTTT
TGTGCAGCCATTTGGTATTTCTTGGTGTTGATTCCATTTTGTATAAATTC
AGCAGCGATGCGACAAAATTCTTTGGCAACAGTAGCGTCTACTTGATTCA
CCAATGTTAAGTGTTGTTTTTGTTCGTCGGTTAAGATGAGCAACATGTTG
GAAAATCCAATACAACCAAAATGTTAACGAATCAAGATTCCATACACAAT
TTGTTGATGGTCATTTGACGATGttatttattcttattttatactttttg
tattctgttttttttttattattattctgtaaataaaaataaaaacatat
ataCATGGTATTGATAGGTTGCACCGAAGTTCTATACCATTTGGCGTTGA
AGTCTATTGAATAACTCATTACTTTAGCataa

Coding sequence (CDS) from alignment at sc0000098:383934..385265

>TCONS_00009777 ID=TCONS_00009777|Name=TCONS_00009777|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at sc0000098:383934..385265 (Clytia hemisphaerica)
TCATTTAATATTGCGTGCAATTCTTCGACAGTGTGctgttttaatttcat
ttaatgCTTCTTCTAAAACTTGTGTCATATGTACTAAGTTCACTGGATCT
GTCTGCAAAACAGTGACGTCATTCTCCCCAGGCCCTTTGTTGAGATGAAG
CTTTAACATCACTTGTGGTGTCGTCTGATAAGTAAGCATGCGCGTAGCTA
ACTGTACATCAAAACGCCATTCTAAGTTCTTATACTGCGGTAAAGATAAT
TCCATTTTAGATAAAATCTTTCGAATATCTTGTTTGTTATTTTCGTAAAA
CTCAACAAGCGTGTTAAAAACATCCTCATCTAAATCTAGACTTAACAACG
AATCTTTAAAGTCAGTTTCCACTAAGAACATTTTCGAAGATTCTGAAAGT
AAATACATAATGGCCTCGACACATTGAGCAATTAATTTGGCATCTAATTC
AAGTTTTTGTGCAGCCATTTGGTATTTCTTGGTGTTGATTCCATTTTGTA
TAAATTCAGCAGCGATGCGACAAAATTCTTTGGCAACAGTAGCGTCTACT
TGATTCACCAATGTTAAGTGTTGTTTTTGTTCGTCGGTTAAGATGAGCAA
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005468XLOC_005468Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009777-proteinTCONS_00009777-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009777-exon-sc0000098-1491911889:383934..385265TCONS_00009777-exon-sc0000098-1491911889:383934..385265Clytia hemisphaericaexon
TCONS_00009777-exon-sc0000098-1510915933:383934..385265TCONS_00009777-exon-sc0000098-1510915933:383934..385265Clytia hemisphaericaexon
TCONS_00009777-exon-sc0000098-1575043694:383934..385265TCONS_00009777-exon-sc0000098-1575043694:383934..385265Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:383934..385265 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.2694	39.4282	30.5305	31.8133	23.2029	14.709	19.6502	18.5967	13.5558	11.5413	8.03832	7.48544	6.18513	5.48259	13.3616	12.433	14.8336	13.3913	6.3517	9.25343	13.318	14.5433	25.8268	29.7431	7.87065	11.9712	16.3273	12.0088	22.422	19.2841
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017920COMM
Blast
[Close]
BLAST of TCONS_00009777 vs. Swiss-Prot (Human)
Match: COMD2 (COMM domain-containing protein 2 OS=Homo sapiens GN=COMMD2 PE=1 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 1.152e-56
Identity = 100/200 (50.00%), Postives = 139/200 (69.50%), Query Frame = 3 
Query:  237 MLLILTDEQKQHLTLVNQVDATVAKEFCRIAAEFIQNGINTKKYQMAAQKLELDAKLIAQCVEAIMYLLSESSKMFLVETDFKXXXXXXXXXXXVFNTLVEFYENNKQDIRKILSKMELSLPQYKNLEWRFDVQLATRMLTYQTTPQVMLKLHLNKGPGENDVTVLQTDPVNLVHMTQVLEEALNEIKTAHCRRIARNIK 836
            MLL L++E K+HL  + QVD+ V  EF RIA EF++ G N K Y+ AA+KL + +  +   VE + YLL+ESSK+ + E DF+DS+  L   E++   L++ Y +N+++IR ILS++  SLP Y NLEWR DVQLA+R L  Q  P V +KLHLN+  G+++  VLQTDP  L+H+ Q LE+AL E+KT HCRR+ RNIK
Sbjct:    1 MLLELSEEHKEHLAFLPQVDSAVVAEFGRIAVEFLRRGANPKIYEGAARKLNVSSDTVQHGVEGLTYLLTESSKLMISELDFQDSVFVLGFSEELNKLLLQLYLDNRKEIRTILSELAPSLPSYHNLEWRLDVQLASRSLRQQIKPAVTIKLHLNQN-GDHNTKVLQTDPATLLHLVQQLEQALEEMKTNHCRRVVRNIK 199
The following BLAST results are available for this feature:
BLAST of TCONS_00009777 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COMD21.152e-5650.00COMM domain-containing protein 2 OS=Homo sapiens G... [more]
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