TCONS_00009776 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009776
Unique NameTCONS_00009776
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length730

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009776 ID=TCONS_00009776|Name=TCONS_00009776|organism=Clytia hemisphaerica|type=transcript|length=730bp
aagagATACATTTGTAAGGTTGCAGTTAGAGATCGATTAAATATTGAGAT
TTGAATGGACGTTATTTGCAGTTAGTTTCTGATACTACGCTTATATTACG
CTGATATATAACCGCAACTCGGCAACGAAAAGATAGGTCGTATATTTGCG
GGTTCGATACTCTATCGAAGGAAACAGCAAGCCTTTTGTCAAACGTGACA
CCACGATTGGCTGGGAAAAAAACACAGCTACACATCTACATCTGGCTGGT
CTTTGAAGTTCATCAACAGGCACAATCACAAAGTTCATGTCTCCACACAA
CGCTATGGCAACGTACAAAATCGAGCTCGGTTCCGGCAATTTAAAAGGAT
CTTTTGGTTTCGGTAAGAAAGAAGATTATACGTATGACGTACCGGAGAAC
GCAATTCACGTTTCCATTGACCAAGAAGACCACAGCGCAAATACGTTGAA
TATTGGTAACGGGAACGGGAAGGTCACATTACGTTGGGATAAAGCGTCAC
GTAAGGCTCACGTTCACGCCTGGGTTAATGGTGCCGTTGGACAGGGGAAT
GAAGTACGCTGGACTGTTTACTGCTGGCTGAAAGCTTAAAAACGCAAGTG
TCATAtatcaaatcttttgttttgaatgtaAAACTGTTACTCTAGCTTAA
AAGGTAGTGATTATCGAAAGGATACATTTTTTTGATTGTCCGAGAGGGCG
GAATGGAACGTTGAAATTTGATAAGTTCGG
Run BLAST on NCBI

protein sequence of TCONS_00009776-protein

>TCONS_00009776-protein ID=TCONS_00009776-protein|Name=TCONS_00009776-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MSPHNAMATYKIELGSGNLKGSFGFGKKEDYTYDVPENAIHVSIDQEDHS
ANTLNIGNGNGKVTLRWDKASRKAHVHAWVNGAVGQGNEVRWTVYCWLKA
Run BLAST on NCBI

transcript from alignment at sc0000098:363928..364657

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009776 ID=TCONS_00009776|Name=TCONS_00009776|organism=Clytia hemisphaerica|type=transcript|length=730bp|location=Sequence derived from alignment at sc0000098:363928..364657 (Clytia hemisphaerica)
CCGAACTTATCAAATTTCAACGTTCCATTCCGCCCTCTCGGACAATCAAA
AAAATGTATCCTTTCGATAATCACTACCTTTTAAGCTAGAGTAACAGTTT
tacattcaaaacaaaagatttgataTATGACACTTGCGTTTTTAAGCTTT
CAGCCAGCAGTAAACAGTCCAGCGTACTTCATTCCCCTGTCCAACGGCAC
CATTAACCCAGGCGTGAACGTGAGCCTTACGTGACGCTTTATCCCAACGT
AATGTGACCTTCCCGTTCCCGTTACCAATATTCAACGTATTTGCGCTGTG
GTCTTCTTGGTCAATGGAAACGTGAATTGCGTTCTCCGGTACGTCATACG
TATAATCTTCTTTCTTACCGAAACCAAAAGATCCTTTTAAATTGCCGGAA
CCGAGCTCGATTTTGTACGTTGCCATAGCGTTGTGTGGAGACATGAACTT
TGTGATTGTGCCTGTTGATGAACTTCAAAGACCAGCCAGATGTAGATGTG
TAGCTGTGTTTTTTTCCCAGCCAATCGTGGTGTCACGTTTGACAAAAGGC
TTGCTGTTTCCTTCGATAGAGTATCGAACCCGCAAATATACGACCTATCT
TTTCGTTGCCGAGTTGCGGTTATATATCAGCGTAATATAAGCGTAGTATC
AGAAACTAACTGCAAATAACGTCCATTCAAATCTCAATATTTAATCGATC
TCTAACTGCAACCTTACAAATGTATctctt

Coding sequence (CDS) from alignment at sc0000098:363928..364657

>TCONS_00009776 ID=TCONS_00009776|Name=TCONS_00009776|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at sc0000098:363928..364657 (Clytia hemisphaerica)
TTAAGCTTTCAGCCAGCAGTAAACAGTCCAGCGTACTTCATTCCCCTGTC
CAACGGCACCATTAACCCAGGCGTGAACGTGAGCCTTACGTGACGCTTTA
TCCCAACGTAATGTGACCTTCCCGTTCCCGTTACCAATATTCAACGTATT
TGCGCTGTGGTCTTCTTGGTCAATGGAAACGTGAATTGCGTTCTCCGGTA
CGTCATACGTATAATCTTCTTTCTTACCGAAACCAAAAGATCCTTTTAAA
TTGCCGGAACCGAGCTCGATTTTGTACGTTGCCATAGCGTTGTGTGGAGA
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005467XLOC_005467Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009776-proteinTCONS_00009776-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009776-exon-sc0000098-1491911889:363928..364657TCONS_00009776-exon-sc0000098-1491911889:363928..364657Clytia hemisphaericaexon
TCONS_00009776-exon-sc0000098-1510915933:363928..364657TCONS_00009776-exon-sc0000098-1510915933:363928..364657Clytia hemisphaericaexon
TCONS_00009776-exon-sc0000098-1575043694:363928..364657TCONS_00009776-exon-sc0000098-1575043694:363928..364657Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:363928..364657 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.83858	1.39448	2.46724	2.03665	6.15265	4.06368	7.0038	12.0483	43.8404	130.072	40.773	20.3173	175.446	116.123	165.841	163.159	51.8347	75.2921	87.0092	64.6129	28.3764	29.9621	34.51	46.9199	144.541	119.864	179.929	215.841	188.876	161.631
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009776 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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