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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009753 ID=TCONS_00009753|Name=TCONS_00009753|organism=Clytia hemisphaerica|type=transcript|length=2641bpRun BLAST on NCBI transcript from alignment at sc0000098:420442..433983- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009753 ID=TCONS_00009753|Name=TCONS_00009753|organism=Clytia hemisphaerica|type=transcript|length=13542bp|location=Sequence derived from alignment at sc0000098:420442..433983- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00009753 vs. Swiss-Prot (Human)
Match: ZN112 (Zinc finger protein 112 OS=Homo sapiens GN=ZNF112 PE=1 SV=2) HSP 1 Score: 211.46 bits (537), Expect = 5.007e-57 Identity = 116/363 (31.96%), Postives = 176/363 (48.48%), Query Frame = 1
Query: 274 HDYRRRFICYWCDRRFPHFSALKAHISAHLESARKLCTICNKTFSKKSSLEEHIRTHTGERPYKCNQCGKTFVTSGKLTSHLKIHAGIYAHHCQLCGKKFREHYNLKMHMKMHERRAQEEKEPKKTKMWNCKECEAGFTRKEDLNSHKK-EDHKTPHQLMXXXXXXXXXXXXXXXXVNEDGVSAAKKRTLRTTGFTQKEDGTYVCDLCQKEFVKKDYLNRHLRRHESSTATDCGECGKTYRDKPTMRQHMVDAHGSEAKHYCNICKQGFVILSTLQRHMRIHLDSRPFTCDQCPGTYKSKEDLRRHKRTHEADRPYKCDICHNGFVDKSGLNRHMRIHTGEKPFTCPDCGQSFTQCGTMKLHR 1359
H + + C CD+ F S L+AH H C C K FS+ S L+ H R HTGE+PYKC +CGK F S L H ++H G C+ CGK F +NL++H ++H K + C+EC GF++ L +H++ + P+Q +E G S +++ L++ + Y+C++C K F ++ YL H R H C CGK + + H H + C +C +GF S LQ H R+H++ RP+ C+QC + L+ H R H ++PYKC++C GF +S L H R+HTGEKP+ C CG+ F + +H+
Sbjct: 547 HTGEKPYKCEECDKGFSRSSYLQAHQRVHTGEKPYKCEECGKGFSRNSYLQGHQRVHTGEKPYKCEECGKGFSRSSHLQGHQRVHTGEKPFKCEECGKGFSWSFNLQIHQRVH----------TGEKPYKCEECGKGFSKASTLLAHQRVHTGEKPYQ------------------CDECGKSFSQRSYLQSHQSVHSGERPYICEVCGKGFSQRAYLQGHQRVHTRVKPYKCEMCGKGFSQSSRLEAHR-RVHTGGKPYKCEVCTKGFSESSRLQAHQRVHVEGRPYKCEQCGKGFSGYSSLQAHHRVHTGEKPYKCEVCGKGFSQRSNLQAHQRVHTGEKPYKCDACGKGFRWSSGLLIHQ 880 HSP 2 Score: 139.813 bits (351), Expect = 8.622e-34 Identity = 90/318 (28.30%), Postives = 134/318 (42.14%), Query Frame = 1
Query: 274 HDYRRRFICYWCDRRFPHFSALKAHISAHLESARKLCTICNKTFSKKSSLEEHIRTHTGERPYKCNQCGKTFVTSGKLTSHLKIHAGIYAHHCQLCGKKFREHYNLKMHMKMHERRAQEEKEPKKTKMWNCKECEAGFTRKEDLNSHKKEDHKTPHQLMXXXXXXXXXXXXXXXXVNEDGVSAAKKRTLRTTGFTQKEDGTYVCDLCQKEFVKKDYLNRHLRRHESSTATDCGECGKTYRDKPTMRQHMVDAHGSEAKHYCNICKQGFVILSTLQRHMRIHLDSRPFTCDQCPGTYKSKEDLRRHKRTHEADRPYKCD 1227
H + F C C + F L+ H H C C K FSK S+L H R HTGE+PY+C++CGK+F L SH +H+G + C++CGK F + L+ H ++H R K + C+ C GF++ L +H R + T G Y C++C K F + L H R H C +CGK + +++ H H E + C +C +GF S LQ H R+H +P+ CD C ++ L H+R H +D+ YK +
Sbjct: 631 HTGEKPFKCEECGKGFSWSFNLQIHQRVHTGEKPYKCEECGKGFSKASTLLAHQRVHTGEKPYQCDECGKSFSQRSYLQSHQSVHSGERPYICEVCGKGFSQRAYLQGHQRVHTR----------VKPYKCEMCGKGFSQSSRLEAH---------------------------------------RRVHTGG------KPYKCEVCTKGFSESSRLQAHQRVHVEGRPYKCEQCGKGFSGYSSLQAHH-RVHTGEKPYKCEVCGKGFSQRSNLQAHQRVHTGEKPYKCDACGKGFRWSSGLLIHQRVHSSDKFYKSE 892 HSP 3 Score: 137.502 bits (345), Expect = 4.675e-33 Identity = 103/365 (28.22%), Postives = 148/365 (40.55%), Query Frame = 1
Query: 277 DYRRRFICYWCDRRFPHFSALKAHISAHLESARKLCTICNKTFSKKSSLEEHIRTHTGERPYKCNQCGKTFVTSGKLTSHLKIHAGIYAHHCQLCGKKFREH---YNLKMHMKMHERRAQEEKEPKKTKMWNCKECEAGFTRKEDLNSHKKEDHKTPHQLMXXXXXXXXXXXXXXXXVNEDGVSAAKKRTLRTTGFTQKEDGTYVCDLCQKEFVKKDYLNRHLRRHESSTATDCGECGKTYRDKPTMRQHMVDAHGSEAKHYCNICKQGFVILSTLQRHMRIHLDSRPFTCDQCPGTYKSKEDLRRHKRTHEADRPYKCDICHNGFVDKSGLNRHMRIHTGEKPFTCPDCGQSFTQCGTMKLHRA 1362
+Y + FIC S L H+E C FS S ++ HT E+PYK C +F + L H KIH G K +EH +N +K H+R +K + C C GF + LN H++ V +K Y C+ C K F + YL H R H C ECGK + ++ H H E + C C +GF S LQ H R+H +PF C++C + +L+ H+R H ++PYKC+ C GF S L H R+HTGEKP+ C +CG+SF+Q ++ H++
Sbjct: 419 EYGKSFICS---------SNLDIQHRVHMEENSYNSEECGNGFSLASHFQDLQIVHTKEQPYKRYVCSNSFSHNLYLQGHPKIHIG---------EKPRKEHGNGFNWSSKLKDHQRVHTGQKP------YKCNICGKGFNHRSVLNVHQR-------------------------------VHTGEK--------------PYKCEECDKGFSRSSYLQAHQRVHTGEKPYKCEECGKGFSRNSYLQGHQ-RVHTGEKPYKCEECGKGFSRSSHLQGHQRVHTGEKPFKCEECGKGFSWSFNLQIHQRVHTGEKPYKCEECGKGFSKASTLLAHQRVHTGEKPYQCDECGKSFSQRSYLQSHQS 713 The following BLAST results are available for this feature:
BLAST of TCONS_00009753 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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