TCONS_00009743 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009743
Unique NameTCONS_00009743
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1919

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009743 ID=TCONS_00009743|Name=TCONS_00009743|organism=Clytia hemisphaerica|type=transcript|length=1919bp
AAATCTTGTACGAAGTGTCTCCTTGAATCTAGACCCAAAGAATACGACGC
CGCCAACGACGACGGCGACAACAAAGAAAATACCAAGGAACAGTCGTTTA
GGCGtGCCTCAAAATCAATACCATGACTACCGGAGGCGATTTATATGTTA
TTGGTGTGATCGCCGCTTCCCACATTTCAGTGCGTTGAAAGCACATATTT
CGGCCCATTTGGAGAGCGCTAGAAAGTTATGTACCATTTGTAATAAAACA
TTCAGCAAAAAGAGTTCACTGGAAGAACACATCAGAACTCATACGGGTGA
GCGACCATACAAATGCAACCAGTGTGGAAAAACGTTCGTTACATCAGGAA
AGCTGACATCACATTTGAAAATACACGCCGGCATTTACGCCCATCACTGC
CAATTGTGTGGAAAGAAATTCCGCGAACACTACAATTTGAAGATGCATAT
GAAAATGCACGAGAGGCGTGCTCAAGAGGAGAAGGAacctaaaaaaacaa
agatgTGGAACTGTAAGGAATGCGAGGCGGGTTTCACGCGCAAAGAAGAC
TTGAATTCTCACAAGAAGGAAGATCATAAAACACCACATCAACTCATGTT
AGAAGAACGCAAACTAAAGAGAAAagctgaagaaaaagaaaaagcagTAA
ATGAGGATGGTGTATCAGCCGCCAAGAAACGAACATTGAGAACAACCGGC
TTCACCCAAAAAGAAGATGGCACATATGTTTGCGATTTATGTCAAAAAGA
ATTCGTAAAGAAGGATTACCTGAACCGTCATTTAAGACGTCACGAATCAA
GCACCGCTACGGATTGCGGAGAATGCGGGAAGACGTACCGAGATAAACCA
ACTATGCGACAACACATGGTTGATGCGCACGGAAGCGAAGCGAAACACTA
TTGCAATATATGTAAGCAAGGCTTTGTTATTTTGTCAACCTTACAACGTC
ACATGCGGATCCATCTCGATTCACGTCCGTTTACTTGCGATCAATGTCCG
GGTACTTACAAATCGAAAGAGGATTTAAGGCGCCATAAGCGGACCCACGA
GGCCGACCGCCCGTACAAATGCGATATTTGTCATAATGGATTTGTTGATA
AATCAGGGCTGAACCGTCATATGCGGATTCATACCGGTGAAAAACCATTC
ACGTGTCCGGATTGCGGGCAGTCGTTTACTCAATGTGGAACCATGAAACT
CCACCGTGCTAAGAGACATCCCAATAGCACTATCGAGCTTACGGACCTTC
GTTCCGGTGCACGAATTGCCGCCGAGATGACGACGAAAACCGCCACTGAT
GAAGACACTCCGAAAATTCCCGAAAAATCTGACCCTGATGAAGAAGTCAC
AGAGTCGGAAGACGAAACTGCTCCTACCACGGAAAACTCCAAGTTTAGTA
CGGTTCAAGAACTCTTGAATTGGATTGGTCAAAATCAGAATTCAGAACAG
AATACGTCATACGAAATGTAGTGTGACTTGATTCTGAAAAGGTACAACAA
CTGTGTATTGTTTAGATTCAGANTTCATACGAAATGTAGTGAGACTTGAT
TCTGAAAAGGTGTCAGTAAAATTACAAAGACGCGAATAACCATTGATACA
GTTTGGTAAGATGGCGATCAAATTCGAAATTGAAGAAGATGTTATTAATG
ACGGCTTCTTTGAAAAGGACTAGTAAATTGTCTAAACTTTCATAGGTact
ttttattgatttatttgtAATGATTAGTTACATGTTTGGACCAAAAAGGA
CGGTGGCCCATAATGCTCACGGCGTACTTCCAGTTCTGACACACctctag
gctgctggcatccactaacggattcgtgttCCTtatacctggggttttgt
agaggtctgcgattcagactaacaCACTTCCAGTTCACAAATTTTACAAG
TGCTGGAAGTGTCTTGTGA
Run BLAST on NCBI

transcript from alignment at sc0000098:420442..432502-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009743 ID=TCONS_00009743|Name=TCONS_00009743|organism=Clytia hemisphaerica|type=transcript|length=12061bp|location=Sequence derived from alignment at sc0000098:420442..432502- (Clytia hemisphaerica)
AAATCTTGTACGAAGTGTCTCCTTGAATCTAGGTTAGTAGCAATCATTTG
TAAGTGTGAACATAATGATGTCAAAGAATGTCTCCAAAATCTTGTACCAA
GAGTCTCCTTGAATCTATAGAAATATGTTCTAAATGTGAACAATAGTTAC
ACCCCTGTGTCACAGACCCGGTGGGATCCTTCCCCACTGGAAAACTTTGC
CAAAATTTCGTCCACTGTGGGAAAAATAACCTACAATTTCGATCCAACTG
GAAAATTGACTTTTAGTATAAATTTAATCTCCATTCAATGGAAAAAGTTG
CAATCCAAAAGTATCTCAATTAAATTTTTTACCTGAGAATGATTTCTATT
GATTATTATTCAAAAAACATTTCAACAAATATTTTTCAGCATAAGCTTTT
CGTTTTATTAAAAAACATCATCAGTGCATATACAAGTAAAACGTTCAAAA
TAAAATGNACGGAAACAAACTTTTTGGGTAATTCGAACAGGTTTTCGGGT
ATGATCATATCATTCTGCTCTTTTTCATGAAAAATCTTAACAACACTTGC
TACAAATCTTGAAGGGAAACCAGCTCTTTCAAACTTATCAACTACAATTT
CCTTTTCCATTGAAAAATCTGATGCAATATTCTTTGTTCGATGTAGGTCA
ACATTCACAGCATTTCGCTTGAACTTTTTGGGAATTTTTGATGACCAATG
GACTGGAACCTTTTTATCACTCCGAAATACTGATGTGCTAATTTCGCCAT
TTTCATACGTTAATTTGGTGTCAAGGGATTTTTCGGGTTTCACTTCAACT
GTGAACTTGATATTTGGATGATAGTTATTCAGACTCTCGAGAAGGGTATC
CGGTTCATCTTTATGTCGTTTGATTATTAAATCATCGACAAACCTTTTGT
AAAACTCTGGTTCGGTAGGGGTTATGACATCTTTTTCCAACTTTGTCATG
TAAATGTATCGAAAGTAACTGACAATGGACCACCCATAGTGCAGCCATCG
ATCTGTTTGTAAAATTTGTCGTTGAACATAAAAAGACTATCAGTGGATAA
TTTTAGAAGTAAACGCTTGAAAACTGTTTTTGAAGCAATTGGTTTGAATT
TCTTTCTATTGTAGATTTTGTCAATAATATAATCGATAGTTGGACGTACC
GGAACATTTGTAAATAGACTTTCAACATCGTACGAAACAAACTCCTCCGA
ATCATTCAATCGCGGTAAATTTCTTATCATTGAAGGGAATTTTTGAGTGT
TTTTGATCACGTAGTCATTTTCGTCAACCAAAGGTTTTAAGTAGTTTGCG
ATAACTTGAGACGCGTTGTATGTTGCAGTACCAACTTGAGCGATAATAGG
ACGAAACTTCAAGTCGTTTACGTTGATTTCCGTATTGCTTTTGAACTGGT
TGATTTGATGACGGTATCATGTCTTTATATTTTTCAAACTTTTTGAAATT
TCTGTAGAGGAAACTTTTGAATTTTTTGAGGTCTTCCATGGTAGTATCAG
TTGAATTTTTGTAAACACCTTTTGTGATTCCTTCATCGACCATACTTTGA
AGTNTTTTCTCAAACTTTTAAAAAAAGTTTGTCATAACCCCTACCGAACC
AGAGTTTTACAAAAGGTTTGTCGATGATTCAATAACCAAACGACATAAAG
ATGAACCGGATACCCTTCTCGAGAGTCTGAATAACTATCACCCAAATATC
AAGTTCACAGTTGAAGTGAAACCCGAAAAATNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGTAT
ATGCACTGATGATGTTTTTTAATAAAACGAAAAGCTTATGCTGAAAAATA
TTTGTTGAAATGTTTTTTGAATAATAATTAATTTTCTGGCTATATTTTTT
TACAACAACGATTTCTATTGACTGAAAGCTATTTTGATGATCAAGAAGTG
TTACTGGTAACAGATAAATTTATAGGTCATTGCGTTATGGATTGTATCTA
GTCCGTATAAAACACCCTGGTCTGGAAGGCTATTGTTGTAACTTTTTGTT
AACATTTCCCTTTGTTTAATAACGATTATAAAAATCGATTTGCTCAGTTT
TTGATCACGTTACCAAATACTCCTCCTGAGATTGGTTCAAAAGTTGATCA
CATGATCAGAAAATGAGCAAACCAAACTAATTTATCAACGCAAGTTCAAA
TTCGAAACAATAGAAAGAACCAAAAGGCTTCCAAACCGGGGTTTCTTATA
CGGACTATGATCTAGCATTCATGTTTTCGTTTCAGACCCAAAGAATACGA
CGCCGCCAACGACGACGGCGACAACAAAGAAAATACCAAGGAACAGTCGT
TTAGGCGGTAAATCTATGTAGTTTTGTAGTTTTCGTCCATTGAGTTTAAA
GCCCGAAGGGCTAGAGTAGAANGGTAAATCTATGTAGTTTTCGTCCATTG
AGTTTAAAGCCTGAAGGGCTAGAGTAGAATCTCTAAACCTTTCCGAGGCA
AGAAAAAGTGAAGCCACTTACTTCCCATCCAGGAGTCTCGAGTCTAGCCC
TTCGGGCTTGGAAGTGAATGTTTTCGCCATCATGGAAGTAAATGTTCGAA
TCTGTACGCAAATCGAACGTTTGCTTCCATAATGGCGAAATCACGAAACT
TAACAAAACATAAAAAAACATTGACACTTATCAAGCCTTTTAAGGACGCG
GAAAGATTTTCTAAAAACAAATTGAAGAATCTTGATTTCTTTTTCTCTTT
TTTGGTTGGAAAAAATAGTCCACCTAAAGCTTTTTGATAGACTGGATGGT
ACGATCATTTGGCCCCTTCTTGGTATATGATAGCTTTCAATTTTTGTTTT
TTTGCCTCTACAATCAGTGCCATAACATGTTGGCACTTTTGGCTAATTTA
CCATTTTTGGAAAATTGAAGTTCGAGCGAGAATGTAAATTTCAGGCCTTA
AACTTGATTTCATCGATTATTTCGATCTGGGAGGGATTTATTGGTTTCTA
GGCTATATTTCAAGCCCTACTGGACCATTTTTGAACTTTTGGATCCTTAG
ATCCTAAGGTCCTAAGTTTTAAGTCTAGCGTTAAAACTCAGAGTTAAAAC
TCTACCTTTCGAACCTACTTTAGAGCACTTATAAATCGATTGTGGTTTCA
AAACTTCCCAGTGGATTTCCCTTTTGTGCCATGTATTTTGTCACTGATTG
TAGTTGTTTTTGAAAGGTAACAAGGGGGTGAAGGGACCTTTTTGTTTGAA
AATAAGGAATTGCAAATTTTATTTATCAACTTCGAGCACTTTTTTTGTTA
CTTTGGATTTGTGCGTTTTTTGTTTTCCAAAATGGTGATCTCACCAAGTC
TAAGTCTACTTAAACTTGACTCGGCGTCATCAAAAAATATCAATAAGCAA
ATTTCAGCCTGAAGTAGACTCCAGTAGAAAGGAAAATGGAGGTCGAAACT
AGTAACCGAGGAGCATTTTGATGCCCCTAACATTTCGCTTCCCTCACAAA
AAAGCTACTAGACCCTACAGTTGACTTTCTCTAATTCGATCTTCGCTGGA
CCAAAAATTCTCTTCCAATTACAAAGAGATTCGAATTATAGAGAGTATTT
TAGGTGGCTTGCTCATTGACGGGTTCTGAGAATTAGTTTGAATTAGAGAA
AGATTCGAATATGAGAAGTTCGAATAAACTGTCACCCACCATGACTGGGC
AACAAAAAAAATGTTCACCCTCTAAATGTTCAAAATAGATGCCACTTTAA
TGGACTAAAATATTCTAACTTGATTTTGACTTGTTAGAATCATTGCATTA
ATATTTTCAATCTTTTGTACCGTCATTTCTCCATTTTAGAAGATTGAGTT
TGAAAAATCAATTTGAAATTGAGTTTTTGCCACCGAATAACGGTGGTAAA
AAAGTGCTTGAAAAATACCCTGGGTTACTGTATTCTATTTGTAGGACCAC
ATTCGCATGATTACAGGCGGTTCGTTTGTTTTTGGTGTGACCGGCGCTTT
ACAATCTACAGCATGTTTAAAGTTCACGTCGCCTCTCATCTGGAGGCGGT
CAGGGTGCCATGTACAATATGTTCTAAATCATTTACGACAAAGAGTTCCT
TGAAAGACCATATGCGAACTCACACAGGTAAATACATCACTTTGTTCTTA
TAAAAAAATGTACTTTATTTTTTATTTACAGTGCCTCAAAATCAATACCA
TGACTACCGGAGGCGATTTATATGTTATTGGTGTGATCGCCGCTTCCCAC
ATTTCAGTGCGTTGAAAGCACATATTTCGGCCCATTTGGAGAGCGCTAGA
AAGTTATGTACCATTTGTAATAAAACATTCAGCAAAAAGAGTTCACTGGA
AGAACACATCAGAACTCATACGGGTAATAACCACTGACCTTTATATACCC
CTGGACCAAGTTATATCCGCCATCAATTTTTTGAATTGGTACCCGTAAAG
AAGCCATTGCAGTGTTCAAAATGAACGTTTAACGGCGCTACATCATCAAA
AGTATTCCAGGAAAAATAAATCTAGCGCTCTCAATTCATTTACACCGCTA
TTGAGTAGTGCCACCATTAGGGTACCACTTTTCAAAAAACTCCGATCAAA
GATTTTTCTTGGCCGGGATTGAGAAGCTTGGTCCAGGGTTTATTAAAGGT
CAGTGATAATAACACTGATCTCTTTCGTAGGGGATCTCTACATATATTTT
CTAATCTACTACCCATGTATGTTGAATATAAAATAATATAATAGACCTTT
TCATAAAATAACAGCACGAACAACATCTGCCTCGTTTTCAAACAATCACC
AAGATGATCATATCTTATGCGGCCTAAAATGACACATCTTTCAATGAAGT
CGAGTTTTGATGAACTCCATTTGGTATTAAAAAGGGGCCAGTAGAAGTTC
ACAATGTAATTTATGAAAAGGCCCATTAAAGTCCTCCTGCAGATTCAACA
GTGATATAGTGGAATCCATCTGATAAAAATTGTTCCTCTTATTTTATTTC
AGGTGAGCGACCATACAAATGCAACCAGTGTGGAAAAACGTTCGTTACAT
CAGGAAAGCTGACATCACATTTGAAAATACACGCCGGCATTTACGCCCAT
CACTGCCAATTGTGTGGAAAGAAATTCCGCGAACAGTAAGTTGTAGTCAT
CGTCATATTCCTTTAGAAGAGGAAAATATAGAAAACTCTGAACTAGAAAA
ATATATCCCATTTTGTACGAGTAAAAGTGTGATAACTGGTTTATCGTCAA
CTTGAAAAATATTAAAAAACTTTTCTGGGGCCTGGACTTCCCGAGTTATT
TTTTTCCGAGTTATTTTTCATGTGACCTCATAAATCACAAAATATGGTAA
GTTTTGTTTTCTAGCTTTTAACTTTTCGAGTTATTTGGTGTTTTTTAACT
CAGTTTTTTTTTCGTGCCTTTAACTTTTTGAGTTATTAGATAAATTTTAA
CTAGGGTTTTTTTCTTGGCCTCGATTTATGGAAAATTCGACTATGGGTTT
GTTTCGTGAAGGGACAGATTTGTGTTAAATATATCAACAAAAAACTCGAA
AAGTTAGAACAAAACCGAGTATGCGTATTGGAAGTGAAAAGAAAAGGAGA
TTGTACAAAAATTTTATTTCTCGCTTACCAGACCCCTTTTTTGAACGAGG
TCTTGTTTTTTTACCGCATATGAAAATGCACGAGAGGCGTGCTCAAGAGG
AGAAGGAACCTAAAAAGTGTATTTTACTTCATAGCTACAATTTGAAGATG
CATATGAAAATGCACGAGAGGCGTGCTCAAGAGGAGAAGGAACCTAAAAA
AACAAAGATGTGGAACTGTAAGGAATGCGAGGCGGGTTTCACGCGCAAAG
AAGACTTGAATTCTCACAAGAAGGAAGATCATAAAACACCACATCAACTC
ATGTTAGAAGAACGCAAACTAAAGAGAAAAGCTGAAGAAAAAGAAAAAGC
AGGTATCTAGTCTAGGCTAGTTTTTTTTTTTCTTTAAACAGACCTGATTT
ACAGTTTACGCTCTTTAATTTGATTTTCAAGGGGAATAGCATTTTCATCG
AATAAGGGTAAGGGAGGGTATTGAAGTGTAGAGCTTTGTCTGTAAGAGTT
TCTTGTTGACGGTGACTTTCAATATGATCGAATAAGGGAGCGTATCGAAT
AGTAGAGCGTCGTTTATGAGAGTTTCTTGTTGACGGTGACTTTCAATATG
ATCGAATAAAAGAGCGTATTGAATAGTGCAACGTCGAATTAGAGAGCGTC
GATCGTCGTTGACGGGGGGGGGGGGGTCCAAAANTCCTTCACTCTGTTTT
AAAAAGGGTTGTACGCGCTCCAGAACTCTCACGTCCCTTCACTCTGTTTT
AAAAAGGGTTGTACGCGCTCCAGAACTCTCACGTTCCTTCACTCAGTTTT
AAAAAGGGTTGTACGCGCTCCAGAACTCTCACGTTCCTTCACTCTGTTTT
AAAAAGGGTTGTACGCGCTTCAGAACTCTCACGTTCCTTCACTCTGTTTT
AAAAAGGGTTGTACGCGCTCCAGAACTCTCACGTTCCTTCACTCTGTTTT
AAAAAGGGTTGTACGCGCTCCAGAACTCTCACGTTCCTTCACTCAGTTTA
CAAAGCAAAGAGAGAGACAAAAGTCAACAATCGTGTACAAAATGAACAGT
AAATCTTTCATTATTCGTTGAGCTCGGTAAATATGTTGATCTATTATTAT
TCTCTGATTATGTTTTTCTTCTCTTTGCATTCATAGTAAATGAGGATGGT
GTATCAGCCGCCAAGAAACGAACTTTGAGAACAACCGGCTTCACCCAAAA
AGAAGGTCAGTTTGCCCGTCATAATAGTATTGATTCTCATTTTTTTTAAG
AGATAAAATAAACTCTTGGATGGAAGATGAAGCCATTTATTCCCTATTTG
ACTGGTTTTCACAAAAACACCGGATTGAAAATAAAATATGTCGCCATATT
TCAAAAATAGGAAAACTAAGAAAGCGCGTCGTTTTTAATCTGTCATTCTA
AATAAGGCGTATATCTTATGTTTTTACTTTTTCTTGCTTGAGAAAGAGTT
AAGATTCCAATCTACCCCATTAAACTCTATGATTGCTTCGGCCCACTGTA
AGATTATAATAAGGTCCTCCAAATAAACGAAATCTGCGTGGAAAAGATGC
TACTAAGCTCAGCTACGGGGGGGGGGGGGGGGGAAAAAGGGGGGGGGGGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNAACAGTAAATCTTTCATTATTCGTTGAGCTCGGTAAATATGTTGAT
CTATTATTAGTCTCTGATTATGTTTTTCTTCTCTTTGCATTCATAGTAAA
TGAGGATGGTGTATCAGCCGCCAAGAAACGAACATTGAGAACAACCGGCT
TCACCCAAAAAGAAGGTCAGTTTGCCCGTCGGTAGGCAAAAATGGGTGCT
GGGTATGTGCGGACGATAAGGGTCGGTTTTTTTACCTTCCAAAGTCTCTC
TAAGGTTTACAAAAACCAGAAAATTTCAAAGTAATCCCTCTAAGGGTCGG
AAAATTAACTATTTTTAGGAAACTTTTTGATGAGAGAAAAAATTGTAAGA
AAGTCTCCCTAAGGGTAAGACATTTTTCCAAAAAGTCTCTTCAGGCACTT
TTTCGATAGAAATTAGAAACTAGTTCTATCTAAGGGTCGGTTTTCGGAGG
TCCCGTCGGCACATATTCCTCATCCGCCAACCCTAGTACCCCCCCCCTTT
AAACAAACAACACAACACAAACACATCTCAGATTATCCAAATTCTCCAAA
TTTCCGAATCTCTTTTATAGATGGCACATATGTTTGCGATTTATGTCAAA
AAGAATTCGTAAAGAAGGATTACCTGAACCGTCATTTAAGACGTCACGAA
TCAAGCACCGCTACGGATTGCGGAGAATGCGGGAAGACGTACCGAGATAA
ACCAACTATGCGACAACACATGGTTGATGCGCACGGAAGCGAAGCGAAAC
ACTATTGCAATATATGTAAGCAAGGCTTTGTTATTTTGTCAACCTTACAA
CGTCACATGCGGATCCATCTCGATTCACGTCCGTTTACTTGCGATCAATG
TCCGGGTACTTACAAATCGAAAGAGGATTTAAGGCGCCATAAGCGGACCC
ACGAGGCCGACCGCCCGTACAAATGCGATATTTGTCATAATGGATTTGTT
GATAAATCAGGGCTGAACCGTCATATGCGGATTCATACCGGTGAAAAACC
ATTCACGTGTCCGGATTGCGGGCAGTCGTTTACTCAATGTGGAACCATGA
AACTCCACCGTGCTAAGAGACATCCCAATAGCACTATCGAGCTTACGGAC
CTTCGTTCCGGTGCACGAATTGCCGCCGAGATGACGACGAAAACCGCCAC
TGATGAAGACACTCCGAAAATTCCCGAAAAATCTGACCCTGATGAAGAAG
TCACAGAGTCGGAAGACGAAACTGCTCCTACCACGGAAAACTCCAAGTTT
AGTACGGTTCAAGAACTCTTGAATTGGATTGGTCAAAATCAGAATTCAGA
ACAGAATACGTCATACGAAATGTAGTGTGACTTGATTCTGAAAAGGTACA
ACAACTGTGTATTGTTTAGATTCAGANTTCATACGAAATGTAGTGAGACT
TGATTCTGAAAAGGTACAATAATTGTGTATGGTTTAGATTCAGAGATTAC
CAATTTCCCATCATTTTTCCATTTTGTGCAGACGAACGATTGAATGAGCT
TGATACTCTGGAAATGACTCGGAAAATGTTTTTCGAGGAATGAGACATTT
TCATTCGTATGTGTATCAGATATTCTCTCTACATTTTTTAGGCGTACAAA
CTTTCGCTAGGTCGAGAAATCGCGAAATTTACGAAAATTTATTTTCGTGA
ATTGGGCGAAAAATGTTCTTTCAATCAAGAAAAGTTTCACACGAAAAAAT
GGCTTAGAGTGACAAACATTTCTTGAATTGAAAGTAAAACTTCCTTATTA
TGAGGATTAAGCAGGTTAAAGAGCGCCATAAATGTTACATTTTATTTTAA
GTTAGAAGTTTATAGATTTTCTATTTTGTTTAGATATTTCGCGAGCATCA
TAAACTTTTGCGAATGGCCTTTTAAGAATTTTAGAGACATTTACTTTCGC
GAAAAGAGCTAAAATTCGCGAAAATTGCGAAAGTTTCTGTTCGCGAAAGT
TTGTACGTACGCCTGAAGTAAGCCCAACGACCATATTTCATACAGAAAAT
ATTCATCTTTCTTGATGTATGATAAAGTCTTTTACTATGTTATCAAATCA
GGTGTCAGTAAAATTACAAAGACGCGAATAACCATTGATACAGTTTGGTA
AGATGGCGATCAAATTCGAAATTGAAGAAGATGTTATTAATGACGGCTTC
TTTGAAAAGGACTAGTAAATTGTCTAAACTTTCATAGGTACTTTTTATTG
ATTTATTTGTAATGATTAGTTACATGTTTGGACCAAAAAGGACGGTGGCC
CATAATGCTCACGGCGTACTTCCAGTTCTGACACACCTCTAGGCTGCTGG
CATCCACTAACGGATTCGTGTTCCTTATACCTGGGGTTTTGTAGAGGTCT
GCGATTCAGACTAACACACTTCCAGTTCACAAATTTTACAAGTGCTGGAA
GTGTCTTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005448XLOC_005448Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009743-exon-sc0000098-1575043694:432471..432502TCONS_00009743-exon-sc0000098-1575043694:432471..432502Clytia hemisphaericaexon
TCONS_00009743-exon-sc0000098-1575043694:428496..428567TCONS_00009743-exon-sc0000098-1575043694:428496..428567Clytia hemisphaericaexon
TCONS_00009743-exon-sc0000098-1575043694:426480..426671TCONS_00009743-exon-sc0000098-1575043694:426480..426671Clytia hemisphaericaexon
TCONS_00009743-exon-sc0000098-1575043694:425718..425850TCONS_00009743-exon-sc0000098-1575043694:425718..425850Clytia hemisphaericaexon
TCONS_00009743-exon-sc0000098-1575043694:424901..425118TCONS_00009743-exon-sc0000098-1575043694:424901..425118Clytia hemisphaericaexon
TCONS_00009743-exon-sc0000098-1575043694:422688..422756TCONS_00009743-exon-sc0000098-1575043694:422688..422756Clytia hemisphaericaexon
TCONS_00009743-exon-sc0000098-1575043694:421440..422282TCONS_00009743-exon-sc0000098-1575043694:421440..422282Clytia hemisphaericaexon
TCONS_00009743-exon-sc0000098-1575043694:420442..420801TCONS_00009743-exon-sc0000098-1575043694:420442..420801Clytia hemisphaericaexon
TCONS_00009743-exon-sc0000098-1510915933:432471..432502TCONS_00009743-exon-sc0000098-1510915933:432471..432502Clytia hemisphaericaexon
TCONS_00009743-exon-sc0000098-1510915933:428496..428567TCONS_00009743-exon-sc0000098-1510915933:428496..428567Clytia hemisphaericaexon
TCONS_00009743-exon-sc0000098-1510915933:426480..426671TCONS_00009743-exon-sc0000098-1510915933:426480..426671Clytia hemisphaericaexon
TCONS_00009743-exon-sc0000098-1510915933:425718..425850TCONS_00009743-exon-sc0000098-1510915933:425718..425850Clytia hemisphaericaexon
TCONS_00009743-exon-sc0000098-1510915933:424901..425118TCONS_00009743-exon-sc0000098-1510915933:424901..425118Clytia hemisphaericaexon
TCONS_00009743-exon-sc0000098-1510915933:422688..422756TCONS_00009743-exon-sc0000098-1510915933:422688..422756Clytia hemisphaericaexon
TCONS_00009743-exon-sc0000098-1510915933:421440..422282TCONS_00009743-exon-sc0000098-1510915933:421440..422282Clytia hemisphaericaexon
TCONS_00009743-exon-sc0000098-1510915933:420442..420801TCONS_00009743-exon-sc0000098-1510915933:420442..420801Clytia hemisphaericaexon
TCONS_00009743-exon-sc0000098-1491911889:432471..432502TCONS_00009743-exon-sc0000098-1491911889:432471..432502Clytia hemisphaericaexon
TCONS_00009743-exon-sc0000098-1491911889:428496..428567TCONS_00009743-exon-sc0000098-1491911889:428496..428567Clytia hemisphaericaexon
TCONS_00009743-exon-sc0000098-1491911889:426480..426671TCONS_00009743-exon-sc0000098-1491911889:426480..426671Clytia hemisphaericaexon
TCONS_00009743-exon-sc0000098-1491911889:425718..425850TCONS_00009743-exon-sc0000098-1491911889:425718..425850Clytia hemisphaericaexon
TCONS_00009743-exon-sc0000098-1491911889:424901..425118TCONS_00009743-exon-sc0000098-1491911889:424901..425118Clytia hemisphaericaexon
TCONS_00009743-exon-sc0000098-1491911889:422688..422756TCONS_00009743-exon-sc0000098-1491911889:422688..422756Clytia hemisphaericaexon
TCONS_00009743-exon-sc0000098-1491911889:421440..422282TCONS_00009743-exon-sc0000098-1491911889:421440..422282Clytia hemisphaericaexon
TCONS_00009743-exon-sc0000098-1491911889:420442..420801TCONS_00009743-exon-sc0000098-1491911889:420442..420801Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:420442..432502 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.8242	17.1353	10.0893	8.62659	5.75168	5.70652	5.62301	7.48073	5.89127	4.68079	6.17849	4.16767	6.27694	5.22544	6.35473	6.23001	7.3672	9.0827	5.81424	5.48569	7.60432	7.21471	20.7209	17.5783	9.1734	8.27996	9.84763	9.41157	12.3949	14.5499
Blast
[Close]
BLAST of TCONS_00009743 vs. Swiss-Prot (Human)
Match: ZN112 (Zinc finger protein 112 OS=Homo sapiens GN=ZNF112 PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 1.029e-57
Identity = 120/373 (32.17%), Postives = 181/373 (48.53%), Query Frame = 2 
Query:   92 SRLGVPQNQYHDYRRRFICYWCDRRFPHFSALKAHISAHLESARKLCTICNKTFSKKSSLEEHIRTHTGERPYKCNQCGKTFVTSGKLTSHLKIHAGIYAHHCQLCGKKFREHYNLKMHMKMHERRAQEEKEPKKTKMWNCKECEAGFTRKEDLNSHKK-EDHKTPHQLMXXXXXXXXXXXXXXXXVNEDGVSAAKKRTLRTTGFTQKEDGTYVCDLCQKEFVKKDYLNRHLRRHESSTATDCGECGKTYRDKPTMRQHMVDAHGSEAKHYCNICKQGFVILSTLQRHMRIHLDSRPFTCDQCPGTYKSKEDLRRHKRTHEADRPYKCDICHNGFVDKSGLNRHMRIHTGEKPFTCPDCGQSFTQCGTMKLHR 1207
            S L V Q + H   + + C  CD+ F   S L+AH   H       C  C K FS+ S L+ H R HTGE+PYKC +CGK F  S  L  H ++H G     C+ CGK F   +NL++H ++H             K + C+EC  GF++   L +H++    + P+Q                   +E G S +++  L++       +  Y+C++C K F ++ YL  H R H       C  CGK +     +  H    H     + C +C +GF   S LQ H R+H++ RP+ C+QC   +     L+ H R H  ++PYKC++C  GF  +S L  H R+HTGEKP+ C  CG+ F     + +H+
Sbjct:  538 SVLNVHQ-RVHTGEKPYKCEECDKGFSRSSYLQAHQRVHTGEKPYKCEECGKGFSRNSYLQGHQRVHTGEKPYKCEECGKGFSRSSHLQGHQRVHTGEKPFKCEECGKGFSWSFNLQIHQRVH----------TGEKPYKCEECGKGFSKASTLLAHQRVHTGEKPYQ------------------CDECGKSFSQRSYLQSHQSVHSGERPYICEVCGKGFSQRAYLQGHQRVHTRVKPYKCEMCGKGFSQSSRLEAHR-RVHTGGKPYKCEVCTKGFSESSRLQAHQRVHVEGRPYKCEQCGKGFSGYSSLQAHHRVHTGEKPYKCEVCGKGFSQRSNLQAHQRVHTGEKPYKCDACGKGFRWSSGLLIHQ 880

HSP 2 Score: 138.658 bits (348), Expect = 4.669e-34
Identity = 90/318 (28.30%), Postives = 134/318 (42.14%), Query Frame = 2 
Query:  122 HDYRRRFICYWCDRRFPHFSALKAHISAHLESARKLCTICNKTFSKKSSLEEHIRTHTGERPYKCNQCGKTFVTSGKLTSHLKIHAGIYAHHCQLCGKKFREHYNLKMHMKMHERRAQEEKEPKKTKMWNCKECEAGFTRKEDLNSHKKEDHKTPHQLMXXXXXXXXXXXXXXXXVNEDGVSAAKKRTLRTTGFTQKEDGTYVCDLCQKEFVKKDYLNRHLRRHESSTATDCGECGKTYRDKPTMRQHMVDAHGSEAKHYCNICKQGFVILSTLQRHMRIHLDSRPFTCDQCPGTYKSKEDLRRHKRTHEADRPYKCD 1075
            H   + F C  C + F     L+ H   H       C  C K FSK S+L  H R HTGE+PY+C++CGK+F     L SH  +H+G   + C++CGK F +   L+ H ++H R           K + C+ C  GF++   L +H                                       R + T G        Y C++C K F +   L  H R H       C +CGK +    +++ H    H  E  + C +C +GF   S LQ H R+H   +P+ CD C   ++    L  H+R H +D+ YK +
Sbjct:  631 HTGEKPFKCEECGKGFSWSFNLQIHQRVHTGEKPYKCEECGKGFSKASTLLAHQRVHTGEKPYQCDECGKSFSQRSYLQSHQSVHSGERPYICEVCGKGFSQRAYLQGHQRVHTR----------VKPYKCEMCGKGFSQSSRLEAH---------------------------------------RRVHTGG------KPYKCEVCTKGFSESSRLQAHQRVHVEGRPYKCEQCGKGFSGYSSLQAHH-RVHTGEKPYKCEVCGKGFSQRSNLQAHQRVHTGEKPYKCDACGKGFRWSSGLLIHQRVHSSDKFYKSE 892

HSP 3 Score: 136.732 bits (343), Expect = 2.364e-33
Identity = 103/365 (28.22%), Postives = 148/365 (40.55%), Query Frame = 2 
Query:  125 DYRRRFICYWCDRRFPHFSALKAHISAHLESARKLCTICNKTFSKKSSLEEHIRTHTGERPYKCNQCGKTFVTSGKLTSHLKIHAGIYAHHCQLCGKKFREH---YNLKMHMKMHERRAQEEKEPKKTKMWNCKECEAGFTRKEDLNSHKKEDHKTPHQLMXXXXXXXXXXXXXXXXVNEDGVSAAKKRTLRTTGFTQKEDGTYVCDLCQKEFVKKDYLNRHLRRHESSTATDCGECGKTYRDKPTMRQHMVDAHGSEAKHYCNICKQGFVILSTLQRHMRIHLDSRPFTCDQCPGTYKSKEDLRRHKRTHEADRPYKCDICHNGFVDKSGLNRHMRIHTGEKPFTCPDCGQSFTQCGTMKLHRA 1210
            +Y + FIC          S L      H+E        C   FS  S  ++    HT E+PYK   C  +F  +  L  H KIH G          K  +EH   +N    +K H+R    +K       + C  C  GF  +  LN H++                               V   +K               Y C+ C K F +  YL  H R H       C ECGK +     ++ H    H  E  + C  C +GF   S LQ H R+H   +PF C++C   +    +L+ H+R H  ++PYKC+ C  GF   S L  H R+HTGEKP+ C +CG+SF+Q   ++ H++
Sbjct:  419 EYGKSFICS---------SNLDIQHRVHMEENSYNSEECGNGFSLASHFQDLQIVHTKEQPYKRYVCSNSFSHNLYLQGHPKIHIG---------EKPRKEHGNGFNWSSKLKDHQRVHTGQKP------YKCNICGKGFNHRSVLNVHQR-------------------------------VHTGEK--------------PYKCEECDKGFSRSSYLQAHQRVHTGEKPYKCEECGKGFSRNSYLQGHQ-RVHTGEKPYKCEECGKGFSRSSHLQGHQRVHTGEKPFKCEECGKGFSWSFNLQIHQRVHTGEKPYKCEECGKGFSKASTLLAHQRVHTGEKPYQCDECGKSFSQRSYLQSHQS 713
The following BLAST results are available for this feature:
BLAST of TCONS_00009743 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN1121.029e-5732.17Zinc finger protein 112 OS=Homo sapiens GN=ZNF112 ... [more]
back to top