|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009740 ID=TCONS_00009740|Name=TCONS_00009740|organism=Clytia hemisphaerica|type=transcript|length=2640bpRun BLAST on NCBI protein sequence of TCONS_00009740-protein >TCONS_00009740-protein ID=TCONS_00009740-protein|Name=TCONS_00009740-protein|organism=Clytia hemisphaerica|type=polypeptide|length=583bp MKILLALFIFVNLISLSLQIPIKKDHNLHTFKSIFQNLGAHSSTGCTICKRun BLAST on NCBI transcript from alignment at sc0000098:385747..418409- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009740 ID=TCONS_00009740|Name=TCONS_00009740|organism=Clytia hemisphaerica|type=transcript|length=32663bp|location=Sequence derived from alignment at sc0000098:385747..418409- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000098:385747..418409- >TCONS_00009740 ID=TCONS_00009740|Name=TCONS_00009740|organism=Clytia hemisphaerica|type=CDS|length=24528bp|location=Sequence derived from alignment at sc0000098:385747..418409- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009740 vs. Swiss-Prot (Human)
Match: ASM (Sphingomyelin phosphodiesterase OS=Homo sapiens GN=SMPD1 PE=1 SV=4) HSP 1 Score: 397.512 bits (1020), Expect = 3.826e-126 Identity = 204/538 (37.92%), Postives = 297/538 (55.20%), Query Frame = 3
Query: 309 PIKKDHNLHTFKSIFQNLGAHSSTGCTICKGLVEILHGVGSTGLGEGELINIATKICLKAKIEDNNVCNSVTREFADELWYVLMDAALQPEKVCGWIFGDSCLHYVDYFPSWNITIPPRTRPATNSWKTQKSNVNPKKILHFSDTHIDFDYLQGSNAVCNEPLCCRPVNGKAGPNDTAAPKWGFPGNCDANPLLVNNLFNHIALAHEDAEYIYWTGDVPAHNVWNQSREDQIFTIKQATKLLVQYFPHKKVFPALGNHEGAPVNSFPPPYITGQQSLSWLLDTLAEDWTTWLPKDTEETIRRGGFYTVLVEEGFRVISLNMNYGNEGNWWLWINSKDPAGQLQWLADTLYKAEQNNEKVHILGHIPPSGTLLWFRFNYYRIVDRFHDTIAAQFFGHTHHDEFSLFYHSDDTEVPNNIAYIGPSVTTYNNMNPGYRTYDVDGSTTNATWNVINHDTFYAEIQKTDDTHP-PEWLHEYNAKEAYGMKDLSPGQWHSLIQRMYNDPELFQIMFKAYRKQYKYDTCDTLKCRRSFLCGMMDG 1919
P LH +++ + C ICKGL ++ + ++A K+C KI VC S+ F D++ V + L P + CG + G +C H+ D F SWNI++P +P +IL +D H D DYL+G++ C +PLCCR +G + A WG CD + +L + + A + +YWTGD+PAH+VW+Q+R+DQ+ + T L+ ++ V+PA+GNHE PVNSFPPP+I G S WL + +A+ W WLP + T+R GGFY + G R+ISLNMN+ + N+WL INS DPAGQLQWL L AE +KVHI+GHIPP L + +NYYRIV R+ +T+AAQFFGHTH DEF +FY + P +A++ PS TTY +NPGYR Y +DG+ + ++ V++H+T+ + + + P W Y A+E YG+ + P WH+L+ RM D +LFQ + Y K + CR + LC +
Sbjct: 64 PQGHPARLHRIVPRLRDVFGWGNLTCPICKGLFTAINLGLKKEPNVARVGSVAIKLCNLLKIAPPAVCQSIVHLFEDDMVEVWRRSVLSPSEACGLLLGSTCGHW-DIFSSWNISLPTVPKPPPKPPSPPAPGAPVSRILFLTDLHWDHDYLEGTDPDCADPLCCRRGSGLPPASRPGAGYWGEYSKCDLPLRTLESLLSGLGPA-GPFDMVYWTGDIPAHDVWHQTRQDQLRALTTVTALVRKFLGPVPVYPAVGNHESTPVNSFPPPFIEGNHSSRWLYEAMAKAWEPWLPAEALRTLRIGGFYALSPYPGLRLISLNMNFCSRENFWLLINSTDPAGQLQWLVGELQAAEDRGDKVHIIGHIPPGHCLKSWSWNYYRIVARYENTLAAQFFGHTHVDEFEVFYDEETLSRPLAVAFLAPSATTYIGLNPGYRVYQIDGNYSGSSHVVLDHETYILNLTQANIPGAIPHWQLLYRARETYGLPNTLPTAWHNLVYRMRGDMQLFQTFWFLYHKGHPPSEPCGTPCRLATLCAQLSA 599 The following BLAST results are available for this feature:
BLAST of TCONS_00009740 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.