Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009736 ID=TCONS_00009736|Name=TCONS_00009736|organism=Clytia hemisphaerica|type=transcript|length=1940bpRun BLAST on NCBI transcript from alignment at sc0000098:360339..381217- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009736 ID=TCONS_00009736|Name=TCONS_00009736|organism=Clytia hemisphaerica|type=transcript|length=20879bp|location=Sequence derived from alignment at sc0000098:360339..381217- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00009736 vs. Swiss-Prot (Human)
Match: EI2BD (Translation initiation factor eIF-2B subunit delta OS=Homo sapiens GN=EIF2B4 PE=1 SV=2) HSP 1 Score: 424.861 bits (1091), Expect = 8.147e-141 Identity = 201/369 (54.47%), Postives = 273/369 (73.98%), Query Frame = 2 Query: 464 KKITKTLAKQNVPQRSAAQKKVQMFAHLHQYEKDRSLTKNLSFSSCSIHPAIIKLGLQFAEGIITGSNARCISMLCALKMVIKDYSTPPQKELSRDLESKIKPCISFLTQCRNLSQSMGNAIKYLKHQITNLSPELPEAKAKEHLLESIDSFIQERIILADQQITNFAVQKIHDGNKILIYGFSSLIINILKDAKDSGKEFQVVVVDCRPDFPGRETLKRLEDAEIKCSYTLLNNISYIIKEVTTVFLGTHALLANGNVMAKAGTSMVAMVAKSNNVPVLVCCETYKFCERAQSDSFVFNELGDPDDLVSLHRPHSQDILTNWRDIKSLYLLNLVYDVTPSSFVDMVVTEIGMIPCTSVPVVLRVKNTN 1570 +++ K +Q VP R KV +F+HL QY + SLT+ +S S IHPA+++LGLQ+++G+++GSNARCI++L AL+ VI+DY+TPP +ELSRDL +K+KP +SFLTQCR LS SM NAIK+L +IT++ E +AK L +ID ++QE+I+LA Q I+ FA QKI +G+ IL+YG SSL+ IL++A G+ F+VVVVD RP GR TL+ L A + SY L+ SY++ EV+ V LG HALLANG+VM++ GT+ +A+VA+++NVPVLVCCETYKFCER Q+D+FV NEL DPDDL H L NW++ SL LLNLVYDVTP VD+V+TE+GMIPC+SVPVVLRVK+++ Sbjct: 156 RRLVKKPERQQVPTRKDYGSKVSLFSHLPQYSRQNSLTQFMSIPSSVIHPAMVRLGLQYSQGLVSGSNARCIALLRALQQVIQDYTTPPNEELSRDLVNKLKPYMSFLTQCRPLSASMHNAIKFLNKEITSVGSSKREEEAKSELRAAIDRYVQEKIVLAAQAISRFAYQKISNGDVILVYGCSSLVSRILQEAWTEGRRFRVVVVDSRPWLEGRHTLRSLVHAGVPASYLLIPAASYVLPEVSKVLLGAHALLANGSVMSRVGTAQLALVARAHNVPVLVCCETYKFCERVQTDAFVSNELDDPDDLQCKRGEHV--ALANWQNHASLRLLNLVYDVTPPELVDLVITELGMIPCSSVPVVLRVKSSD 522 The following BLAST results are available for this feature:
BLAST of TCONS_00009736 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|