TCONS_00009731 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009731
Unique NameTCONS_00009731
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length486

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009731 ID=TCONS_00009731|Name=TCONS_00009731|organism=Clytia hemisphaerica|type=transcript|length=486bp
AAAGCCAGTCTCTTTGCTCGCATTTTACCTAGGAGGCGGGTTTTTTGTAC
CAATTATCATCAAATTTACTACagtaaaaataatataataagaGTGATGA
TAACAACACCAAACAAACATGTTCCGACTTCTTCATTTTCCAATTTCTAA
CACATTATCAACACAATGGGTCCAGTTGCTCTTGGCAACGACTCTATTGT
TCCTATTGGTAGTTCAAGTGGAAGCTGACAAACCGAAATCAAAGTGGAGA
GATTTCATCCAAATCTCGAAAGCGACAGAACAACGAGAAGGAAAGTCAAG
TTACAGCGAGGGATCAGCTCGTTTGCTTGAAAGATTTGGAAAGttacatc
aaaattttaaagatttgaaaGatGAACTTGGGTACAAAGAAGGCAAAAAG
ATAAATTACACGCCGCCTGaCCCAGCAGCACATTTAAAAGAGTCAAGTAA
GTTTTCTTACGAAAATCTTATTTAACCAAGATTTTA
Run BLAST on NCBI

protein sequence of TCONS_00009731-protein

>TCONS_00009731-protein ID=TCONS_00009731-protein|Name=TCONS_00009731-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
MFRLLHFPISNTLSTQWVQLLLATTLLFLLVVQVEADKPKSKWRDFIQIS
KATEQREGKSSYSEGSARLLERFGKLHQNFKDLKDELGYKEGKKINYTPP
DPAAHLKESSKFSYENLI
Run BLAST on NCBI

transcript from alignment at sc0000098:140098..143437-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009731 ID=TCONS_00009731|Name=TCONS_00009731|organism=Clytia hemisphaerica|type=transcript|length=3340bp|location=Sequence derived from alignment at sc0000098:140098..143437- (Clytia hemisphaerica)
AAAGCCAGTCTCTTTGCTCGCATTTTACCTAGGAGGCGGGTTTTTTGTAC
CAATTATCATCAAATTTACTACAGTAAAAATAATATAATAAGAGTGATGA
TAACAACACCAAACAAACATGTTCCGACTTCTTCATTTTCCAATTTCTAA
CACATTATCAACACAATGGGTCCAGTTGCTCTTGGCAACGACTCTATTGT
TCCTATTGGTAGTTCAAGTGGAAGCTGACAAACCGAAATCAAAGTGGAGA
GGTAGGAGCTATTTCAGATTTGGTCTAAAAAACAGGGTAGCCAATTTGGC
TGGCCAATTAGGCTAGGTTGTTGGGTACCCGTGTAAATCACAGACCAGAA
ATAATATAGTCGATTCTTTATACGAATTCTACAGACCTTTCACTGACAAA
GGCTTGGAATACCGTTTGCTAATGGTCAATGCATTGCTGCTGGTAATAAT
TCTGGTCAATGCAATGCTGGTGCTGATGGTTCGGGACGAGATAGAGTTTT
TACAAGCTCTTATTTGATTTGGTTGGTCGTTAACTAGTAATAAAACAATT
TTGTTACTTTTTCTAAAGAATGCGTCATTTTTATTACTTCAAATGATCAA
TTATCAAAGTATCTTATAAAAACTCCATCTCATCTGTATGGTTCTGGTCA
ATACATTGCACGCTTCAAAAGAATTTCACAACTGGCGAAAGTGAATGCGC
CATATTAATATCAAATCCTTTGATGAATTCTTTTATAAGAACATCCCAAA
TTTTTTGAAGCCTTTGGATGTTCTTTTAACTTTTCGAGTTTTAGGTTAAA
GAAATTTTTTGTAACATTGTTTTTCAGTATGTTTGTGCAATTTCCTAATA
CATTGGGTGTTTTAGAGTTTATATCAAGCCTTAAAATGTTTTTAGTTTGT
TCTTATGACATTTTCAATTTAAAAGAAATTATATAATCATCACAAGAGAA
AATTTCCTCACAAATTCCATTTTGTTTAGATTTCATCCAAATCTCGAAAG
CGACAGAACAACGAGAAGGTACGGTTATAACTACACCCCTATCTCACAAA
AATTGTCTCAGCCGTCCTCAGTCATCACTCCTGTCTCGTTATATTTAAGT
CATCACCCCTGTTTCATAACACATGCTTCAACACCTCCGTGTCACCCAAC
CGCTGCCACACAACCACTGTTTTTCAAATCCTGTTGAATAAACCATATCT
CAACATCCCTGTCTCGTCTTCCATCAAGGGTTTTTCGGTTCATATCCAAA
CTCCTTCCTATGTTCTGTTCAGTTCTCAAATAACCGTGGACCCTGTGAAG
CAATCGAAAGACTGCCTAAAAGTCCTAGATCACTGGGCCATCCATCTAAT
GGTAGCACTTTTCCATGTCGGCGAACAAAATTTTAAACGGAAAACCCCAT
TCCATTGAGTTTAAAGCCCGAAGGGGTTAAAGTAGATCTCTATTCTTTCC
CAGGCAAGAAAAAGTGAAGCCCCTTATTTCCCATCTGGAACGCGCCATAA
TCATGGCGACAGATTGTATCTAGCGGTTCCTTTTTCAAGACTGCTTTTTT
TGAAATCTAGCAATAGATTTTAGTTTTAAGTCGGCGTTTGTGTAAAAACC
AACACACGGGCGTTCTGGATGGGAAATAAGTGGTTCCATTTCCTTGTCGA
GTAGTGCTACCGTTAGGTACTACTTTTCTGTAAAACTCCGATCAAAGATA
GCCGATATAGCTTGGTCCAGGGAATACGAAGGTCAGAGGTTACATATGCT
TCTTATCTTTTTCCAGGAAAGTCAAGTTACAGCGAGGGATCAGCTCGTTT
GCTTGAAAGATTTGGAAAGTTACATCAAAATTTTAAAGATTTGAAAGGTT
AGACTAATTAATATTGATTTTTATATATAACCAAATAATTTTAATGAATA
TTAAAAACCTAAAATCGTTGCATCTTGTTTGGTCACTTTAATGGGATTAA
TTTTCGTGGGAATTAAATTTCGCGTTTGAGTTCATCCGCGAAATTAAAAG
ATTTCACGGGGACTTAATATCGTCACGATTTTGTGCGATTTTGACTCTTT
TGTATTTTACTGCCAAATATGCATGTTGGTTGTGAAATACGCATTATAAG
CGTTTCTTTGATTAAAAAAATGGTCTTTTGACATTTTTTGGAATACAATT
CAAAAGAATTTCGCACGGATAAGACCTTTTCAAATTTCCATCGGGACTTA
TATTTTCGCAGATAACAACGAAATCTGTGAAATCCACGAAATTGGATCTC
CGCGAAAATTTATTCCATGAAAGTATTCAGAAGTTGTTTTTGTCTTAATT
TAGAATATAATCAGTAAAATCAGCAAAAAACCTTTTCATTTTTCTTTAGA
TGAACTTGGGTACAAAGAAGGCAAAAAGATAAATTACACGCCGCCTGGTA
TGCTGCGTTTTTTTCTTTGAATTAAAGGTTTTGTTTCTCGAGTTTATCAC
AACGTCATAACAGACCATCCATTTCTACGAATAGCTAACTCTGCTCTAAA
TGGATGTGGCGAATCTGCTGAAAAAAATGTGGAAAAAAGTGATCTGATCT
GCAATCAGTGTCATAATATATTGGCACTTTTGGCTAATTTACAATTTTTC
GAAAATTGAAGTTCGAGCGAGAATGTCAATTCTTAGGCCTTCAACTTGAT
TTCATCGAGTATTTCGATCTGGGAGGGATTTATTGGTTTCTAGGCTATAT
TTCAAGCCCTACTGAACCATTTTTGAACTTTTGGTTCCTCAGATCCTAAG
GTCCTTTACAAATCGATTGTGGTTTCCAAACACCCCGGTGAATTTCCCTT
TTGTGCCAATTATTTTGTCCCTGATTGTGGTTGTTCAGCCAAAACATTCA
AAACCGCGTTGCTTTTTTGCTTGGAAATGACAGCGAAGGGACTGGGTTCT
AATGTATATGTTTTTGACTATCGCTTGTTTTGGTGTTTGCTTTAGCCCAT
TACCGCGCTCAAAAACTTTAATATTCATCCCCAGTCTGGATGAAAAAGGT
CAAAGCGGCCTGGGTAGATGCTCTTACGGAACCATGGGCTTTAGAGCGCA
TACTTGCCAGAGCAGGTTTATCATGCTCTAAGATTCGCTATCGCATTGTT
TAAGGATCAATTCATTTTTGGAAAGTTTCTGAAGCGTTTAAAGTTCAATT
ATATCAATAAAACCAAGCTATGTGGCAACGTGGTATTGGAAGTCTCGATT
ATCCAAAGCATCGAGGATTGGTGTTAAGGATGATCAGAAATCTAACATAA
AAACTTTATTTAATTATTTTCAGACCCAGCAGCACATTTAAAAGAGTCAA
GTAAGTTTTCTTACGAAAATCTTATTTAACCAAGATTTTA

Coding sequence (CDS) from alignment at sc0000098:140098..143437-

>TCONS_00009731 ID=TCONS_00009731|Name=TCONS_00009731|organism=Clytia hemisphaerica|type=CDS|length=1785bp|location=Sequence derived from alignment at sc0000098:140098..143437- (Clytia hemisphaerica)
ACCCAGCAGCACATTTAAAAGAGTCAAGTAAGTTTTCTTACGAAAATCTT
ATTTAAATGAACTTGGGTACAAAGAAGGCAAAAAGATAAATTACACGCCG
CCTGGAAAGTCAAGTTACAGCGAGGGATCAGCTCGTTTGCTTGAAAGATT
TGGAAAGTTACATCAAAATTTTAAAGATTTGAAAGATTTCATCCAAATCT
CGAAAGCGACAGAACAACGAGAAGATGTTCCGACTTCTTCATTTTCCAAT
TTCTAACACATTATCAACACAATGGGTCCAGTTGCTCTTGGCAACGACTC
TATTGTTCCTATTGGTAGTTCAAGTGGAAGCTGACAAACCGAAATCAAAG
TGGAGAGACCCAGCAGCACATTTAAAAGAGTCAAGTAAGTTTTCTTACGA
AAATCTTATTTAAATGAACTTGGGTACAAAGAAGGCAAAAAGATAAATTA
CACGCCGCCTGGAAAGTCAAGTTACAGCGAGGGATCAGCTCGTTTGCTTG
AAAGATTTGGAAAGTTACATCAAAATTTTAAAGATTTGAAAGATTTCATC
CAAATCTCGAAAGCGACAGAACAACGAGAAGATGTTCCGACTTCTTCATT
TTCCAATTTCTAACACATTATCAACACAATGGGTCCAGTTGCTCTTGGCA
ACGACTCTATTGTTCCTATTGGTAGTTCAAGTGGAAGCTGACAAACCGAA
ATCAAAGTGGAGAGACCCAGCAGCACATTTAAAAGAGTCAAGTAAGTTTT
CTTACGAAAATCTTATTTAAATGAACTTGGGTACAAAGAAGGCAAAAAGA
TAAATTACACGCCGCCTGGAAAGTCAAGTTACAGCGAGGGATCAGCTCGT
TTGCTTGAAAGATTTGGAAAGTTACATCAAAATTTTAAAGATTTGAAAGA
TTTCATCCAAATCTCGAAAGCGACAGAACAACGAGAAGATGTTCCGACTT
CTTCATTTTCCAATTTCTAACACATTATCAACACAATGGGTCCAGTTGCT
CTTGGCAACGACTCTATTGTTCCTATTGGTAGTTCAAGTGGAAGCTGACA
AACCGAAATCAAAGTGGAGAGACCCAGCAGCACATTTAAAAGAGTCAAGT
AAGTTTTCTTACGAAAATCTTATTTAAATGAACTTGGGTACAAAGAAGGC
AAAAAGATAAATTACACGCCGCCTGGAAAGTCAAGTTACAGCGAGGGATC
AGCTCGTTTGCTTGAAAGATTTGGAAAGTTACATCAAAATTTTAAAGATT
TGAAAGATTTCATCCAAATCTCGAAAGCGACAGAACAACGAGAAGATGTT
CCGACTTCTTCATTTTCCAATTTCTAACACATTATCAACACAATGGGTCC
AGTTGCTCTTGGCAACGACTCTATTGTTCCTATTGGTAGTTCAAGTGGAA
GCTGACAAACCGAAATCAAAGTGGAGAGACCCAGCAGCACATTTAAAAGA
GTCAAGTAAGTTTTCTTACGAAAATCTTATTTAAATGAACTTGGGTACAA
AGAAGGCAAAAAGATAAATTACACGCCGCCTGGAAAGTCAAGTTACAGCG
AGGGATCAGCTCGTTTGCTTGAAAGATTTGGAAAGTTACATCAAAATTTT
AAAGATTTGAAAGATTTCATCCAAATCTCGAAAGCGACAGAACAACGAGA
AGATGTTCCGACTTCTTCATTTTCCAATTTCTAACACATTATCAACACAA
TGGGTCCAGTTGCTCTTGGCAACGACTCTATTGTTCCTATTGGTAGTTCA
AGTGGAAGCTGACAAACCGAAATCAAAGTGGAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005443XLOC_005443Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009731-exon-sc0000098-1575043694:143187..143437TCONS_00009731-exon-sc0000098-1575043694:143187..143437Clytia hemisphaericaexon
TCONS_00009731-exon-sc0000098-1575043694:142420..142458TCONS_00009731-exon-sc0000098-1575043694:142420..142458Clytia hemisphaericaexon
TCONS_00009731-exon-sc0000098-1575043694:141591..141671TCONS_00009731-exon-sc0000098-1575043694:141591..141671Clytia hemisphaericaexon
TCONS_00009731-exon-sc0000098-1575043694:141041..141088TCONS_00009731-exon-sc0000098-1575043694:141041..141088Clytia hemisphaericaexon
TCONS_00009731-exon-sc0000098-1575043694:140098..140164TCONS_00009731-exon-sc0000098-1575043694:140098..140164Clytia hemisphaericaexon
TCONS_00009731-exon-sc0000098-1510915933:143187..143437TCONS_00009731-exon-sc0000098-1510915933:143187..143437Clytia hemisphaericaexon
TCONS_00009731-exon-sc0000098-1510915933:142420..142458TCONS_00009731-exon-sc0000098-1510915933:142420..142458Clytia hemisphaericaexon
TCONS_00009731-exon-sc0000098-1510915933:141591..141671TCONS_00009731-exon-sc0000098-1510915933:141591..141671Clytia hemisphaericaexon
TCONS_00009731-exon-sc0000098-1510915933:141041..141088TCONS_00009731-exon-sc0000098-1510915933:141041..141088Clytia hemisphaericaexon
TCONS_00009731-exon-sc0000098-1510915933:140098..140164TCONS_00009731-exon-sc0000098-1510915933:140098..140164Clytia hemisphaericaexon
TCONS_00009731-exon-sc0000098-1491911889:143187..143437TCONS_00009731-exon-sc0000098-1491911889:143187..143437Clytia hemisphaericaexon
TCONS_00009731-exon-sc0000098-1491911889:142420..142458TCONS_00009731-exon-sc0000098-1491911889:142420..142458Clytia hemisphaericaexon
TCONS_00009731-exon-sc0000098-1491911889:141591..141671TCONS_00009731-exon-sc0000098-1491911889:141591..141671Clytia hemisphaericaexon
TCONS_00009731-exon-sc0000098-1491911889:141041..141088TCONS_00009731-exon-sc0000098-1491911889:141041..141088Clytia hemisphaericaexon
TCONS_00009731-exon-sc0000098-1491911889:140098..140164TCONS_00009731-exon-sc0000098-1491911889:140098..140164Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009731-proteinTCONS_00009731-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:140098..143437 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.0492	29.8503	14.2117	11.492	41.2803	28.1162	33.2624	30.2149	9.38985	12.834	12.9761	13.4773	13.629	12.1192	8.87272	11.7852	12.1147	17.9359	29.9531	33.3383	19.4419	16.3085	18.5034	18.1574	21.5894	18.2862	46.364	48.1689	6.68139	6.95211
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009731 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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