TCONS_00009723 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009723
Unique NameTCONS_00009723
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009723 ID=TCONS_00009723|Name=TCONS_00009723|organism=Clytia hemisphaerica|type=transcript|length=1329bp
TCAGCAATTACAGAAAGAATGTGGttataataaaaaattgaaattaatca
GATTCCTTCTTTGAAATGGCAgatgaaaaagatgaagaaaagaTGCCAGA
CTGCTTTCAAAATGGATGCGTATCTTTTATTGGTCAAAACGTGAAATGTA
TACCAAACTGGCTGTCAAGTAAATATGGCTCCAAAACAATACGTGCAGAT
TTCAGCTACAACAATTTGAAGAGTGTGAAGGGACTTGTTGGTTTTGATGT
ACTGAAAGAATTGGTGCTTGACAACAACTGTCTGACCGACGATGTTCAAT
TCCCAAAGCTGGAATCACTAGAAACATTAACTGCTAATAAAAACAATATT
CAAAATTTAGAATTATTTATGGCCCACATTGTAGAAACCTTACCCAATTT
AACTTATTTATCATTGCTTGGGAATACAGCGTGTCCGAATCAATTATCAA
ACCTTGACAATGATGAAGAAGATTATCAACGATACAGATATTACGTATTG
TACATGATGCCAAATCTGAAGTTTTTGGATTCGACACCAGTCTCTTCATC
AGAACGAAAAGAAGCTTTGAGGATTGGTGCCTTCACTAAAGTCGTTTCAG
CTGATACCTTTGAAGATaTCGACGAAGAAAATTCATCATCCGCAAACGAA
GGTTACACGCCTCTCCCTTCATCATCTACAATGAACGGTGAAGATGACCA
TAAAAGTACTTTTGGGAAATGCCGGTATATTTATTATGGAAAACATTCTG
AAGGGAACAGATTCATTGCTAATAACGATTTATAATATCTTTGGTTACTA
CAAATGATTACTTGAAACAAACACCTTTGGCAATGTTTTAATTCCTATCA
CCGTCGTTTGACATCGCTCCCTGGACAAAGAATCCACCTTTGGTTATTGC
TTTCTTTACTACATCTGCACCTTATTAGATAAGAATTTATGTTATATAGT
CTGACAAGTAGTAGTTTGGCATTTGTTCATGACTCAAATGCATCTTGTAT
TTTCTTTGACTCAGTGAGAATATTTTAGCAAGTGAGGCTAAAATGAACGA
GCTAAATACCAATACCCgagggggcactcaaggtaaacgagcTACCGTAC
GTGCGCCCCTTAAGGGTCCcccttttccaagcttcccaaagtgcactgta
agggtcgaaatgagcaaagttGAGAAAAAGTGCGCTCtaataattttcaa
gaaaacgcaccgtaagggtcgattCTTCatccaaatttactcaaatttgg
ttaaattttctctgcactgtaagatttcaaaggcctaattttgggctgcA
TGTATAGTCGTTTttaaatcgagtgcccc
Run BLAST on NCBI

protein sequence of TCONS_00009723-protein

>TCONS_00009723-protein ID=TCONS_00009723-protein|Name=TCONS_00009723-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
MADEKDEEKMPDCFQNGCVSFIGQNVKCIPNWLSSKYGSKTIRADFSYNN
LKSVKGLVGFDVLKELVLDNNCLTDDVQFPKLESLETLTANKNNIQNLEL
FMAHIVETLPNLTYLSLLGNTACPNQLSNLDNDEEDYQRYRYYVLYMMPN
LKFLDSTPVSSSERKEALRIGAFTKVVSADTFEDIDEENSSSANEGYTPL
PSSSTMNGEDDHKSTFGKCRYIYYGKHSEGNRFIANNDL
Run BLAST on NCBI

transcript from alignment at sc0000098:573813..577805+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009723 ID=TCONS_00009723|Name=TCONS_00009723|organism=Clytia hemisphaerica|type=transcript|length=3993bp|location=Sequence derived from alignment at sc0000098:573813..577805+ (Clytia hemisphaerica)
TCAGCAATTACAGAAAGAATGTGGttataataaaaaattgaaattaatca GATTCCTTCTTTGAAATGGCAgatgaaaaagatgaagaaaagaTGCCAGA CTGCTTTCAAAATGGATGCGTATGtagaaattgttttttaaaactACTAT CATCATTTTTATCTACACATCTTTAAGCAGAGCTTCCAGCATGGGAGGGA CAAAATGTTGGCACTGGGTGGATTGGTACCTCAAAGTCAGTAGGGTCCCG ctttcaaattatagaaatatttattttcttgattgttttttatttaacat tAATCCTGGTTTCATTAAATTAATGCTTTGACCCTTATCTATAATAAATA AtatgataaaatttaaaataaaactcatagtattattattttaacaataA ACCTAGATTTGATCAGAGCTCGGAAGATCTATAGGTTTTATATTACTTGT TATACTAGAGTAGCTTAATGTTGGGATCTGAGTTTGATATGACGTaaatt acttttgaaaatttaataaattGCAATGTATATTGTAGGATCTCAAAATg acaaaacttaaaaaatgcAGTGCTTTCTCACTGTACTCGACGAACTACTT TCTTctatatttcttttaaaatttttctgtcTAAGGTATCTTTTATTGGT CAAAACGTGAAATGTATACCAAACTGGCTGTCAAGTAAATATGGCTCCAA AACAATACGTGCAGATTTCAGCTACAACAATTTGAAGTACCACAATTAAT TTTTATTCGTCCTTTTCTCGTCTTTGACTTTCtgtattggtatatatttt tgaGGCAACTTATTTTCTCGACTTGACTACTGATAGTTATTTACATACTA GTATTTAAAACAGTCCGAATGAAGAACTGAATTCAACATATCAATTCTTG AAATTGCCTTAGAGCACCCCTTCTCACATACCGGTAGAgttttttcagcc agttggggtaaaaataacggatgaATGCTCATTGGgtattgatattccca tgttttttatggcttggAATTTGAATCTGATGTTTTCAGTCAGAAAACTC AGTGGGGGGatgaaaaaaatagcacaatattttgcagtgaggatttgttt atttgattattttcagtgggaacaAAAATTGGATCATAATTTTGTACTGG GACAATATTTTGGACAAATCTTTCAGTTGGAAGGGGTCCCTCTGGGAGTT TTTTAGAGAGCATTCTAAACGTTCAAGTCTTATTATTCTTTTTTGTGTTT GCAGGAGTGTGAAGGGACTTGTTGGTTTTGATGTACTGAAAGAATTGGTG CTTGACAACAACTGTCTGACCGACGATGTTCAATTCCCAAAGCTGGAATC ACTAGAAACATTAACTGCTAATAAAAACAATGTATCTTTTCAACCTTTCA ATAAAATCATAGCCAGATATGATATACAACCAATACATGAATTGTATCCA TTTTTATTGTTAGGAAATCACAAAATATTTTACTGCGATATTACGCCCAA ATTATTCTctcatcacgccatcacgccatcacgccaaaaaattATCTTAT CAATCACGTATCACGTTTTTTGAAATCATAAATAAAGTCATCATGCCAAA AattcccaatcacgccatcacttAAACCGCTCTTAATCATTAAACGGAAT TCACTGTTTCCTGGTGATTTTTGACACCTCGTTAATTCTCTTCATCTTTG GTGGTGTTACTAGTTTTGCGAAGTTacaggtatgtccgagccaaagttcg aaaatcgactcTTAGAGAAACTGAgacttttgatgtttttgcgaCCCTGT GAGAGcctattttccaaatttttaatcACGAGAATTTACGACCCTGCGAG AGAGTCGTACTTTTGGTATTCTGTTAGAGACTCTAATgcagttttttggt ttttgtagCCCTGtcagagactttcgagggtgtgggAAAAGGGAACCTTA TTGCTTGCACATATATTTTGCCTAAGTATTTCCTTAACTGTTAATCATCA TTTTCAGATTCAAAATTTAGAATTATTTATGGCCCACATTGTAGAAACCT TACCCAATTTAACTTATTTATCATTGCTTGGGAATACAGCGTGTCCGAAT CAATTATCAAACCTTGACAATGATGAAGAAGATTATCAACGATACAGGTT CCAATACTCTGATAAAATggtctttttcttttcaaattataGTTCACATC CAAAAGGATATCaacatttcaacaaaaaaacctCTGACCCAAACCAACCA GTTTTAAGGAGTATCCAATGGTATACGGAATGATCTTAACGTGGCTTaca tccttttttgtttttgataggaGAGGGGAAAACTTTTCTTGGGGCCTTTG TATAGGGTGGGTACCAAGATTTGCCAAAAGAAAACTGGAGCGGGGATGTA GGGGGAGGTCAAATAGGTAAGTTTGCAActgcagtcgagggcgacccaaa ggctcccTTTCCTCAAGCTGTCTGCCCGAAGGTAgtggagggcgccactc ctttccctggattgcccagggggggggtcaaatgAAAAGGGAGAATGATA GAGAATTGACAGTATTTACAGAATATCCTATAACATTTTGTCTCCCTTTC TTTCTAGATATTACGTATTGTACATGATGCCAAATCTGAAGTTTTTGGAT TCGACACCAGTCTCTTCATCAGAACGAAAAGAAGCTTTGAGGATTGGTGC CTTCACTAAAGTCGTTTCAGCTGATACCTTTGAAGATGTAAGATCGTATA TTCGGAGTAGCGGAATGTCCTGTGTTGTTCCTAAACACCCCTTGTCTCAG AGAACTTTTCACTAAAGCGGAGATTCACCACGGAATTTTATCTGAAGTGC AATTGGGAGAGaaactctattgttccaagctaaAAAATCCAGTGCGGAGT CCAATtttaacattgaatttcaaatggggatgaaatcaaaataaatttcc cagtggggctgaaattgtaggatatttttccacctgggacgaaattttgg ctaaGGGAACCAGTGGGCCAGagattccaccggggctgtaagAAAGAAAA CAACATTACATAACCAACTCCAGGGGAAGTTTGAATTTGCCTCTTTTGCT GGTCTTGTTAAATAAGAGAACTAAAATTATCGCTAAATGCTGTCACAGAC GGTAATTTCTCTTCGAGAACAACAAGTTTTCTGACTACTTTAATTCACAA TGACAATAGGCATGGTGAAAACAGGACCGTCTAAATTAGAGCCGTCTTGT TTTCtttcttaacattttcattctttttcagaTCGACGAAGAAAATTCAT CATCCGCAAACGAAGGTTACACGCCTCTCCCTTCATCATCTACAATGAAC GGTGAAGATGACCATAAAAGTACTTTTGGGAAATGCCGGTATATTTATTA TGGAAAACATTCTGAAGGGAACAGATTCATTGCTAATAACGATTTATAAT ATCTTTGGTTACTACAAATGATTACTTGAAACAAACACCTTTGGCAATGT TTTAATTCCTATCACCGTCGTTTGACATCGCTCCCTGGACAAAGAATCCA CCTTTGGTTATTGCTTTCTTTACTACATCTGCACCTTATTAGATAAGAAT TTATGTTATATAGTCTGACAAGTAGTAGTTTGGCATTTGTTCATGACTCA AATGCATCTTGTATTTTCTTTGACTCAGTGAGAATATTTTAGCAAGTGAG GCTAAAATGAACGAGCTAAATACCAATACCCgagggggcactcaaggtaa acgagcTACCGTACGTGCGCCCCTTAAGGGTCCcccttttccaagcttcc caaagtgcactgtaagggtcgaaatgagcaaagttGAGAAAAAGTGCGCT CtaataattttcaagaaaacgcaccgtaagggtcgattCTTCatccaaat ttactcaaatttggttaaattttctctgcactgtaagatttcaaaggcct aattttgggctgcATGTATAGTCGTTTttaaatcgagtgcccc

Coding sequence (CDS) from alignment at sc0000098:573813..577805+

>TCONS_00009723 ID=TCONS_00009723|Name=TCONS_00009723|organism=Clytia hemisphaerica|type=CDS|length=4320bp|location=Sequence derived from alignment at sc0000098:573813..577805+ (Clytia hemisphaerica)
ATGGCAgatgaaaaagatgaagaaaagaTGCCAGACTGCTTTCAAAATGG
ATGCGTATCTTTTATTGGTCAAAACGTGAAATGTATACCAAACTGGCTGT
CAAGTAAATATGGCTCCAAAACAATACGTGCAGATTTCAGCTACAACAAT
TTGAAGAGTGTGAAGGGACTTGTTGGTTTTGATGTACTGAAAGAATTGGT
GCTTGACAACAACTGTCTGACCGACGATGTTCAATTCCCAAAGCTGGAAT
CACTAGAAACATTAACTGCTAATAAAAACAATATTCAAAATTTAGAATTA
TTTATGGCCCACATTGTAGAAACCTTACCCAATTTAACTTATTTATCATT
GCTTGGGAATACAGCGTGTCCGAATCAATTATCAAACCTTGACAATGATG
AAGAAGATTATCAACGATACAGATATTACGTATTGTACATGATGCCAAAT
CTGAAGTTTTTGGATTCGACACCAGTCTCTTCATCAGAACGAAAAGAAGC
TTTGAGGATTGGTGCCTTCACTAAAGTCGTTTCAGCTGATACCTTTGAAG
ATaTCGACGAAGAAAATTCATCATCCGCAAACGAAGGTTACACGCCTCTC
CCTTCATCATCTACAATGAACGGTGAAGATGACCATAAAAGTACTTTTGG
GAAATGCCGGTATATTTATTATGGAAAACATTCTGAAGGGAACAGATTCA
TTGCTAATAACGATTTATAAATGGCAgatgaaaaagatgaagaaaagaTG
CCAGACTGCTTTCAAAATGGATGCGTATCTTTTATTGGTCAAAACGTGAA
ATGTATACCAAACTGGCTGTCAAGTAAATATGGCTCCAAAACAATACGTG
CAGATTTCAGCTACAACAATTTGAAGAGTGTGAAGGGACTTGTTGGTTTT
GATGTACTGAAAGAATTGGTGCTTGACAACAACTGTCTGACCGACGATGT
TCAATTCCCAAAGCTGGAATCACTAGAAACATTAACTGCTAATAAAAACA
ATATTCAAAATTTAGAATTATTTATGGCCCACATTGTAGAAACCTTACCC
AATTTAACTTATTTATCATTGCTTGGGAATACAGCGTGTCCGAATCAATT
ATCAAACCTTGACAATGATGAAGAAGATTATCAACGATACAGATATTACG
TATTGTACATGATGCCAAATCTGAAGTTTTTGGATTCGACACCAGTCTCT
TCATCAGAACGAAAAGAAGCTTTGAGGATTGGTGCCTTCACTAAAGTCGT
TTCAGCTGATACCTTTGAAGATaTCGACGAAGAAAATTCATCATCCGCAA
ACGAAGGTTACACGCCTCTCCCTTCATCATCTACAATGAACGGTGAAGAT
GACCATAAAAGTACTTTTGGGAAATGCCGGTATATTTATTATGGAAAACA
TTCTGAAGGGAACAGATTCATTGCTAATAACGATTTATAAATGGCAgatg
aaaaagatgaagaaaagaTGCCAGACTGCTTTCAAAATGGATGCGTATCT
TTTATTGGTCAAAACGTGAAATGTATACCAAACTGGCTGTCAAGTAAATA
TGGCTCCAAAACAATACGTGCAGATTTCAGCTACAACAATTTGAAGAGTG
TGAAGGGACTTGTTGGTTTTGATGTACTGAAAGAATTGGTGCTTGACAAC
AACTGTCTGACCGACGATGTTCAATTCCCAAAGCTGGAATCACTAGAAAC
ATTAACTGCTAATAAAAACAATATTCAAAATTTAGAATTATTTATGGCCC
ACATTGTAGAAACCTTACCCAATTTAACTTATTTATCATTGCTTGGGAAT
ACAGCGTGTCCGAATCAATTATCAAACCTTGACAATGATGAAGAAGATTA
TCAACGATACAGATATTACGTATTGTACATGATGCCAAATCTGAAGTTTT
TGGATTCGACACCAGTCTCTTCATCAGAACGAAAAGAAGCTTTGAGGATT
GGTGCCTTCACTAAAGTCGTTTCAGCTGATACCTTTGAAGATaTCGACGA
AGAAAATTCATCATCCGCAAACGAAGGTTACACGCCTCTCCCTTCATCAT
CTACAATGAACGGTGAAGATGACCATAAAAGTACTTTTGGGAAATGCCGG
TATATTTATTATGGAAAACATTCTGAAGGGAACAGATTCATTGCTAATAA
CGATTTATAAATGGCAgatgaaaaagatgaagaaaagaTGCCAGACTGCT
TTCAAAATGGATGCGTATCTTTTATTGGTCAAAACGTGAAATGTATACCA
AACTGGCTGTCAAGTAAATATGGCTCCAAAACAATACGTGCAGATTTCAG
CTACAACAATTTGAAGAGTGTGAAGGGACTTGTTGGTTTTGATGTACTGA
AAGAATTGGTGCTTGACAACAACTGTCTGACCGACGATGTTCAATTCCCA
AAGCTGGAATCACTAGAAACATTAACTGCTAATAAAAACAATATTCAAAA
TTTAGAATTATTTATGGCCCACATTGTAGAAACCTTACCCAATTTAACTT
ATTTATCATTGCTTGGGAATACAGCGTGTCCGAATCAATTATCAAACCTT
GACAATGATGAAGAAGATTATCAACGATACAGATATTACGTATTGTACAT
GATGCCAAATCTGAAGTTTTTGGATTCGACACCAGTCTCTTCATCAGAAC
GAAAAGAAGCTTTGAGGATTGGTGCCTTCACTAAAGTCGTTTCAGCTGAT
ACCTTTGAAGATaTCGACGAAGAAAATTCATCATCCGCAAACGAAGGTTA
CACGCCTCTCCCTTCATCATCTACAATGAACGGTGAAGATGACCATAAAA
GTACTTTTGGGAAATGCCGGTATATTTATTATGGAAAACATTCTGAAGGG
AACAGATTCATTGCTAATAACGATTTATAAATGGCAgatgaaaaagatga
agaaaagaTGCCAGACTGCTTTCAAAATGGATGCGTATCTTTTATTGGTC
AAAACGTGAAATGTATACCAAACTGGCTGTCAAGTAAATATGGCTCCAAA
ACAATACGTGCAGATTTCAGCTACAACAATTTGAAGAGTGTGAAGGGACT
TGTTGGTTTTGATGTACTGAAAGAATTGGTGCTTGACAACAACTGTCTGA
CCGACGATGTTCAATTCCCAAAGCTGGAATCACTAGAAACATTAACTGCT
AATAAAAACAATATTCAAAATTTAGAATTATTTATGGCCCACATTGTAGA
AACCTTACCCAATTTAACTTATTTATCATTGCTTGGGAATACAGCGTGTC
CGAATCAATTATCAAACCTTGACAATGATGAAGAAGATTATCAACGATAC
AGATATTACGTATTGTACATGATGCCAAATCTGAAGTTTTTGGATTCGAC
ACCAGTCTCTTCATCAGAACGAAAAGAAGCTTTGAGGATTGGTGCCTTCA
CTAAAGTCGTTTCAGCTGATACCTTTGAAGATaTCGACGAAGAAAATTCA
TCATCCGCAAACGAAGGTTACACGCCTCTCCCTTCATCATCTACAATGAA
CGGTGAAGATGACCATAAAAGTACTTTTGGGAAATGCCGGTATATTTATT
ATGGAAAACATTCTGAAGGGAACAGATTCATTGCTAATAACGATTTATAA
ATGGCAgatgaaaaagatgaagaaaagaTGCCAGACTGCTTTCAAAATGG
ATGCGTATCTTTTATTGGTCAAAACGTGAAATGTATACCAAACTGGCTGT
CAAGTAAATATGGCTCCAAAACAATACGTGCAGATTTCAGCTACAACAAT
TTGAAGAGTGTGAAGGGACTTGTTGGTTTTGATGTACTGAAAGAATTGGT
GCTTGACAACAACTGTCTGACCGACGATGTTCAATTCCCAAAGCTGGAAT
CACTAGAAACATTAACTGCTAATAAAAACAATATTCAAAATTTAGAATTA
TTTATGGCCCACATTGTAGAAACCTTACCCAATTTAACTTATTTATCATT
GCTTGGGAATACAGCGTGTCCGAATCAATTATCAAACCTTGACAATGATG
AAGAAGATTATCAACGATACAGATATTACGTATTGTACATGATGCCAAAT
CTGAAGTTTTTGGATTCGACACCAGTCTCTTCATCAGAACGAAAAGAAGC
TTTGAGGATTGGTGCCTTCACTAAAGTCGTTTCAGCTGATACCTTTGAAG
ATaTCGACGAAGAAAATTCATCATCCGCAAACGAAGGTTACACGCCTCTC
CCTTCATCATCTACAATGAACGGTGAAGATGACCATAAAAGTACTTTTGG
GAAATGCCGGTATATTTATTATGGAAAACATTCTGAAGGGAACAGATTCA
TTGCTAATAACGATTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005436XLOC_005436Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009723-proteinTCONS_00009723-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009723-exon-sc0000098-1491911889:573813..573931TCONS_00009723-exon-sc0000098-1491911889:573813..573931Clytia hemisphaericaexon
TCONS_00009723-exon-sc0000098-1510915933:573813..573931TCONS_00009723-exon-sc0000098-1510915933:573813..573931Clytia hemisphaericaexon
TCONS_00009723-exon-sc0000098-1575043694:573813..573931TCONS_00009723-exon-sc0000098-1575043694:573813..573931Clytia hemisphaericaexon
TCONS_00009723-exon-sc0000098-1491911889:574448..574548TCONS_00009723-exon-sc0000098-1491911889:574448..574548Clytia hemisphaericaexon
TCONS_00009723-exon-sc0000098-1510915933:574448..574548TCONS_00009723-exon-sc0000098-1510915933:574448..574548Clytia hemisphaericaexon
TCONS_00009723-exon-sc0000098-1575043694:574448..574548TCONS_00009723-exon-sc0000098-1575043694:574448..574548Clytia hemisphaericaexon
TCONS_00009723-exon-sc0000098-1491911889:575067..575193TCONS_00009723-exon-sc0000098-1491911889:575067..575193Clytia hemisphaericaexon
TCONS_00009723-exon-sc0000098-1510915933:575067..575193TCONS_00009723-exon-sc0000098-1510915933:575067..575193Clytia hemisphaericaexon
TCONS_00009723-exon-sc0000098-1575043694:575067..575193TCONS_00009723-exon-sc0000098-1575043694:575067..575193Clytia hemisphaericaexon
TCONS_00009723-exon-sc0000098-1491911889:575820..575959TCONS_00009723-exon-sc0000098-1491911889:575820..575959Clytia hemisphaericaexon
TCONS_00009723-exon-sc0000098-1510915933:575820..575959TCONS_00009723-exon-sc0000098-1510915933:575820..575959Clytia hemisphaericaexon
TCONS_00009723-exon-sc0000098-1575043694:575820..575959TCONS_00009723-exon-sc0000098-1575043694:575820..575959Clytia hemisphaericaexon
TCONS_00009723-exon-sc0000098-1491911889:576420..576549TCONS_00009723-exon-sc0000098-1491911889:576420..576549Clytia hemisphaericaexon
TCONS_00009723-exon-sc0000098-1510915933:576420..576549TCONS_00009723-exon-sc0000098-1510915933:576420..576549Clytia hemisphaericaexon
TCONS_00009723-exon-sc0000098-1575043694:576420..576549TCONS_00009723-exon-sc0000098-1575043694:576420..576549Clytia hemisphaericaexon
TCONS_00009723-exon-sc0000098-1491911889:577094..577805TCONS_00009723-exon-sc0000098-1491911889:577094..577805Clytia hemisphaericaexon
TCONS_00009723-exon-sc0000098-1510915933:577094..577805TCONS_00009723-exon-sc0000098-1510915933:577094..577805Clytia hemisphaericaexon
TCONS_00009723-exon-sc0000098-1575043694:577094..577805TCONS_00009723-exon-sc0000098-1575043694:577094..577805Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:573813..577805 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.62478 5.15857 43.2536 49.4395 43.3144 28.6921 17.8759 19.4064 21.4878 20.8302 24.4546 26.6446 25.3974 27.2723 34.5603 30.9403 21.9902 26.2055 44.5472 50.5286 36.3537 31.7738 20.0848 25.3593 25.8814 31.0484 27.5376 27.627 32.8732 28.7973
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
Blast
BLAST of TCONS_00009723 vs. Swiss-Prot (Human)
Match: LRMDA (Leucine-rich melanocyte differentiation-associated protein OS=Homo sapiens GN=LRMDA PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 3.126e-59
Identity = 101/191 (52.88%), Postives = 128/191 (67.02%), Query Frame = 3
Query:  210 NNLKSVKGLVGFDVLKELVLDNNCLTDDVQFPKLESLETLTANKNNIQNLELFMAHIVETLPNLTYLSLLGNTACPNQLSNLDNDEEDYQRYRYYVLYMMPNLKFLDSTPVSSSERKEALRIGAFTKVVSADTFEDIDEENSSSANEGYTPLPSSSTMNGEDDHKSTFGKCRYIYYGKHSEGNRFIANNDL 782
            +N +S++GL  F  L+EL+LDNN L DD+  P L  L TLT NKN I +LE  + H+ E  P L YLSLLGN ACPN+L +L+ DEEDY+RYR +VLY +PNLKFLD+  V+  ER+EAL  G F KVV         E+ +SS    YTPLPS+S       H+   GKCRY+YYGK+SEGNRFI ++ L
Sbjct:   13 SNKRSLEGLSAFRSLEELILDNNQLGDDLVLPGLPRLHTLTLNKNRITDLENLLDHLAEVTPALEYLSLLGNVACPNELVSLEKDEEDYKRYRCFVLYKLPNLKFLDAQKVTRQEREEALVRGVFMKVVKPKAS---SEDVASSPERHYTPLPSAS--RELTSHQGVLGKCRYVYYGKNSEGNRFIRDDQL 198          
The following BLAST results are available for this feature:
BLAST of TCONS_00009723 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRMDA3.126e-5952.88Leucine-rich melanocyte differentiation-associated... [more]
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