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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009719 ID=TCONS_00009719|Name=TCONS_00009719|organism=Clytia hemisphaerica|type=transcript|length=1944bp
ctgcgattgcaccttttggcttcaaaagattacgtcataaaaatgtaccG
CGCGCTCgacaaaaaagttgaacttcaaccgttacgtcagatcgcgccaa
tggagttggttcatttttcttttgaccaataaatagcgtggaagctttgc
tcgaaaaagtgtgATCGAAGCGTGCGCAAGCGGCCTTTATAGTACTTTga
gttttgtagaggtctgtgattcacACTATTGTTCCTCCACCTAGGATTAC
TATGAAacccctcttctcacagacccactggaaacccttcccactggaaa
aatgagccaaaatatcgtccccggtggaaaattatcctccaatttttgtc
ccaactgaaaataatcaaataaccATTCCTGTCATTCctaactgcaaaat
atttactatttttcccattcccactggattttctgacttgacatgaaatc
aaaagaattgaaatcctcattcataaaaactttgtaaatatcaatcccca
tcgagtttagTCCgctatttttatccccactggctgaaaaaatcttaccg
ggtctgtgagaaggggatctTATGAAGTTTCATTAAGATcttcaaaaagg
aaaattaccaagaaatatcatatttcatcgAATAATCAAATATGTTAAAA
CTGAAAAGTGAAGTCGTCAGCAAATTTGACTACGGAAAAATACCACAGTG
TAAATATCACAGCATAACAtgagaaagatttttgaaaccaTTGATCTAGA
AAGATGTGTAATACAATTCGAACTGACTATTTAGGTAAAGGtaaacaaaa
tgtcaaaaattctgagaaatggattttcagaattttcccgattttttctT
ACTTTATGTTGTTATTATTAAAATGCTGTTCGAGTAAGCAAAAAGGTAAG
GATTATTATACatcatcattggtaaaagatgacTCGTAAGGCCATCATAT
GACATGAGGACATGAGTTAAAAGGGTTTTTACGAACGAAACGCTGGGGCT
TTCCCTATTTGAGGTTTTTTAAATTATTctaaatttgcaaattttatata
aaaagagaaattcgaAGTCTTAGATTCAATTCGTAAATTAATTTGATTCG
AAAAAGtattctgaatagacgaaagcTGCTAACTTATAATTTTCTACGTC
TTGTACAATGACTTGTTCTTGTAAAGCTCTAATCACGCTTACCTTTGTTT
TATCTTTATGGACCTATGCACACtgtaaaaatattcaaagacaGGAAGTG
TGTTCAAAGGCTAATATTAAATTGCGAACTTTGAGAGAACGTTTCACAGA
TAAAGTGCGTGATGCATGGCTTCCAGCTGCAAAGattaGCAATATCGACA
GTAACGAAGCAAACATTCATTTTACGAGTGCTTTGAATTACCCTTCCAAC
GAGTTTCCTGTCCGTACTTTAATCACTCCTGACATGCTTGAAATCTATCT
CAACGCATTCACAGCTTTAAACACCATTTTCAATAAATGTGCAAGGAAAA
CTACTGACTCGACCATCAAAGCTACGCTCAATAAGTTGGTTCACCATATT
GCTACTGTGATGAATGAAATCGACATTGCTATTAAGgaatacaaaaagtg
tttgaaataccaaaaaagacAAGACTTACTAAAGTTCATTCCCCAACCTC
AGAAAGCCAACAATTTTGTTCAACTCAAAAGACAACTAAAAGAAAAGTCG
TCAAAAAACCATTCTGACCATCAACAACTTATTaataaaatcatcaaaat
taccATTTTTGATATGGACAATATTACCGAGAAGTTTATCCAAGAACTTG
ACATCAAGCTGTTGGACTTGTAGTAATTACAATGTTGCCAACTTTGGAAA
TgcagcaaaaagaaattttgttttaagaTTCTCAGAGTATCTAGACTATT
CAATCTTGTACCCAAAGCCACTTGCATcgcttttttaattttac Run BLAST on NCBI protein sequence of TCONS_00009719-protein >TCONS_00009719-protein ID=TCONS_00009719-protein|Name=TCONS_00009719-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
MTCSCKALITLTFVLSLWTYAHCKNIQRQEVCSKANIKLRTLRERFTDKV
RDAWLPAAKISNIDSNEANIHFTSALNYPSNEFPVRTLITPDMLEIYLNA
FTALNTIFNKCARKTTDSTIKATLNKLVHHIATVMNEIDIAIKEYKKCLK
YQKRQDLLKFIPQPQKANNFVQLKRQLKEKSSKNHSDHQQLINKIIKITI
FDMDNITEKFIQELDIKLLDL Run BLAST on NCBI transcript from alignment at sc0000098:520508..525494+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009719 ID=TCONS_00009719|Name=TCONS_00009719|organism=Clytia hemisphaerica|type=transcript|length=4987bp|location=Sequence derived from alignment at sc0000098:520508..525494+ (Clytia hemisphaerica)
ctgcgattgcaccttttggcttcaaaagattacgtcataaaaatgtaccG
CGCGCTCgacaaaaaagttgaacttcaaccgttacgtcagatcgcgccaa
tggagttggttcatttttcttttgaccaataaatagcgtggaagctttgc
tcgaaaaagtgtgATCGAAGCGTGCGCAAGCGGCCTTTATAGTACTTTga
gttttgtagaggtctgtgattcacACTATTGTTCCTCCACCTAGGATTAC
TATGAAacccctcttctcacagacccactggaaacccttcccactggaaa
aatgagccaaaatatcgtccccggtggaaaattatcctccaatttttgtc
ccaactgaaaataatcaaataaccATTCCTGTCATTCctaactgcaaaat
atttactatttttcccattcccactggattttctgacttgacatgaaatc
aaaagaattgaaatcctcattcataaaaactttgtaaatatcaatcccca
tcgagtttagTCCgctatttttatccccactggctgaaaaaatcttaccg
ggtctgtgagaaggggatctTATGAAGTTTCATTAAGATcttcaaaaagg
aaaattaccaagaaatatcatatttcatcgAATAATCAAATATGTTAAAA
CTGAAAAGTGAAGTCGTCAGCAAATTTGACTACGGAAAAATACCACAGTG
TAAATATCACAGCATAACAtgagaaagatttttgaaaccaTTGATCTAGA
AAGATGTGTAATACAATTCGAACTGACTATTTAGGTAAAGGtaaacaaaa
tgtcaaaaattctgagaaatggattttcagaattttcccgattttttctT
ACTTTATGTTGTTATTATTAAAATGCTGTTCGAGTAAGCAAAAAGGTAAG
GATTATTATACatcatcattggtaaaagatgacTCGTAAGGCCATCATAT
GACATGAGGACATGAGTTAAAAGGGTTTTTACGAACGAAACGCTGGGGCT
TTCCCTATTTGAGGTTTTTTAAATTATTctaaatttgcaaattttatata
aaaagagaaattcgaAGTCTTAGATTCAATTCGTAAATTAATTTGATTCG
AAAAAGtattctgaatagacgaaagcTGCTAACTTATAATTTTCTACGTC
TTGTACAATGACTTGTTCTTGTAAAGCTCTAATCACGCTTACCTTTGTTT
TATCTTTATGGACCTATGCACACtgtaaaaatattcaaagacaGGAAGTG
TGTTCAAAGGCTAATATTAAATTGCGAACTTTGAGAGAACGTTTCACAGA
TAAAGTGCGTGATGCATGGCTTCCAGCTGCAAAGGTAAATGTTCTTTGCA
TATGATACTGTTCACGGCCTGTACGATCAACAATCCAAAAGGTTACTCAT
CAACCAaactagacgatgttatcgtccctTACAAtaatagtaaaggcggg
aaaatatggcggtatgatggcgttatggcggtatacggaaaaagaTCGGC
GGGAAGGTTTCGAAGAAGACTGGTAACTctaccggctgtaaactcttttc
ggcaaaatacccgtttgtgaattttcttcggcttcgggcttttttcttag
atagtgatttgtcttagactatagcatagtctacaaCCAAACCcgccaaa
ataacaaaatttcgGAAGATGCTGCGGCACAGCCAATTtggaaatgtttt
catttgattGTTGAATACGAACTTTTGGATTGCTAACCGTACCTACTATA
Cacgtttctttataagcacatttaacatttttgaagccttcggatgttct
taactttttgaattttaagcctaaaattgttcttaacatgatCTTATTTA
CCCACTTTCTGATCTGTTTTGTTgcttttcttaagaaattggctgtttta
gaatccgcaaagccttaaaatgttcttaaaaacttgttcttaacattttg
gccatcgaagtcctatgttcttatatagttggttctaataaaaaaacgtg
tgcaGCCCCAAAACATCAAGAAACATCATGTATGCCAGTTACATAATCAT
GACTGCCACGGGTACAAGTTGTTGGAATTATAGCATAGCAATTGCAGGGC
CAGGTGCAGaatttatataatatatactTGTTTTATCTACCCCAAAATAA
CGATGCGATATATATCTATATGCCATAGAGTCGATGCCACAATATTTTCT
TATAACTGCTAGAACGGTGTAATCGAACACTtctataaaataaacaaaag
cacAGAATATCTCTGGAAGGAATTTTTAGATCATTTACTGATTGTATGAC
TAAGAAAATTTGACTTTGAGATGCAATAAAAGTCAAATAGTAACGGTCGG
ATTGGAACTTTTAATGTTTTAACATTTATCCAAGTTTTCTTTGTTGGGAC
CTTTCAAATGAATCTTGAAGTCAGAAATATAAGGACAAAGGTTTTTTTCG
GTTTTCATGAATCATGGTGGTCTTATTTCATCATTAGTTCGTCAAATATT
TTCCAGCGGGGAAATTTTTACAATATGAAGGGAAAATTACCTTGAATgta
actttttatgaagtttgAGAAAAACATTACCTCAGGAATAATTGCTGTTA
GTTTACTTTttacctttaaaattttttttttttttacagattaGCAATAT
CGACAGTAACGAAGCAAACATTCATTTTACGAGTGCTTTGAATTACCCTT
CCAACGAGTTTCCTGTCCGTACTTTAATCGTAAGTTGTAATGTTTTAAGC
ACAAGCGTCAGTAACTCAGTACCGATAGGNTAAGGTATATCTACACTCTG
TTTACACCACCCCTGTATCACTGATTCAGTATACCTCACGGAAAGAAATT
TATAcggtatttaatttcgcggctcacagctcaaaattcggaAGTTTCGC
TGAATTAAATTTACAAAAGAATTCCTTTAACAAAAACAAGTGGGTCGAGC
CAATTTGACTGTATCAAGTTATTATTCACCTTAATGAACTTTGGTTATTC
TGCTGGAAGGTACAATCTCGGTCAAGatatattgggaattttggttaatt
cctcgttttcagcaatttaaagATCGGATGATATAGTCGCTTTTGGTcaa
attgataaatttcttCGAATATTTCatttcgggaggggtttatagacttc
caggctatattctgagccctactggaccattatTGGGCTTTTAGTTCCTC
AAATCCTAAAGTCCTAAGTGTTAAGTCTatcgttaaaactctacccgtcc
aacctaatttagagcgcttccaaattgtttgtggttttaagatttcgtgg
gaatttccctgtTTTCttaaatattatgactttgattgtataTCTAAGGT
TTTAAAGAATTCTATTTTGTTTTANtcatagttcagctagtgcactgtaa
gggtaggaaattacaaaactgcactgaactgcactgtaagggtaggaaat
tgtgataaaaggccaatcttacttacgggcgagaaattttgaaaaagtgc
actgtagcCAAATTTTGGCCGAaggtatggtcgttttcagatcgagtgcc
cccccgggttaatttcttaaaaagagtcagtgatagaggaTCATAACatg
aagtctgtctattatttcttctttgtggagcaagattggtcagaaagagg
aaaagaaaagcatttttatGCTTATATATCAGCACAAtttaacaataggc
agacacaaaaacataaaaggggggggggtcgaaaaaatggaaaataaccc
CCCTCCTTCAATAAAGCACATAAGAGTAGCGATGCATCATTTAACAGGTC
CTAATAAAAAGTTCAAATCCAGTATAGAAATAAGCTTTAACatgattttc
atctttttttaatttccagACTCCTGACATGCTTGAAATCTATCTCAACG
CATTCACAGCTTTAAACACCATTTTCAATAAATGTGCAAGGAAAACTACT
GACTCGACCATCAAAGCTACGCTCAATAAGTTGGTTCACCATATTGCTAC
TGTGATGAATGAAATCGACATTGCTATTAAGGTATATCTACACTCTGTTT
ACACCACCCCTGTATCACTGATTCAGTATACCTCACGGAAAGAAATTTAT
AcggtatttaatttcgcggctcacagctcaaaattcggaAGTTTCGCTGA
ATTAAATTTACAAAAGAATTCCTTTAACAAAAACAAGTGGGTCGAGCCAA
TTTGACTGTATCAAGTTATTATTCACCTTAATGAACTTTGGTTATTCTGC
TGGAAGGTACAATCTCGGTCAAGatatattgggaattttggttaattcct
cgttttcagcaatttaaagATCGGATGATATAGTCGCTTTTGGTcaaatt
gataaatttcttCGAATATTTCatttcgggaggggtttatagacttccag
gctatattctgagccctactggaccattatTGGGCTTTTAGTTCCTCAAA
TCCTAAAGTCCTAAGTGTTAAGTCTatcgttaaaactctacccgtccaac
ctaatttagagcgcttccaaattgtttgtggttttaagatttcgtgggaa
tttccctgtTTTCttaaatattatgactttgattgtataTCTAAGGTTTT
AAAGAattctattttgttttattttttaggaatacaaaaagtgtttgaaa
taccaaaaaagacAAGACTTACTAAAGTTCATTCCCCAACCTCAGAAAGC
CAACAATTTTGTTCAACTCAAAAGACAACTAAAAGAAAAGTCGTCAAAAA
ACCATTCTGACCATCAACAACTTATTaataaaatcatcaaaattaccATT
TTTGATATGGACAATATTACCGAGAAGTTTATCCAAGAACTTGACATCAA
GCTGTTGGACTTGTAGTAATTACAATGTTGCCAACTTTGGAAATgcagca
aaaagaaattttgttttaagaTTCTCAGAGTATCTAGACTATTCAATCTT
GTACCCAAAGCCACTTGCATcgcttttttaattttac Coding sequence (CDS) from alignment at sc0000098:520508..525494+ >TCONS_00009719 ID=TCONS_00009719|Name=TCONS_00009719|organism=Clytia hemisphaerica|type=CDS|length=2664bp|location=Sequence derived from alignment at sc0000098:520508..525494+ (Clytia hemisphaerica)
ATGACTTGTTCTTGTAAAGCTCTAATCACGCTTACCTTTGTTTTATCTTT
ATGGACCTATGCACACtgtaaaaatattcaaagacaGGAAGTGTGTTCAA
AGGCTAATATTAAATTGCGAACTTTGAGAGAACGTTTCACAGATAAAGTG
CGTGATGCATGGCTTCCAGCTGCAAAGattaGCAATATCGACAGTAACGA
AGCAAACATTCATTTTACGAGTGCTTTGAATTACCCTTCCAACGAGTTTC
CTGTCCGTACTTTAATCACTCCTGACATGCTTGAAATCTATCTCAACGCA
TTCACAGCTTTAAACACCATTTTCAATAAATGTGCAAGGAAAACTACTGA
CTCGACCATCAAAGCTACGCTCAATAAGTTGGTTCACCATATTGCTACTG
TGATGAATGAAATCGACATTGCTATTAAGgaatacaaaaagtgtttgaaa
taccaaaaaagacAAGACTTACTAAAGTTCATTCCCCAACCTCAGAAAGC
CAACAATTTTGTTCAACTCAAAAGACAACTAAAAGAAAAGTCGTCAAAAA
ACCATTCTGACCATCAACAACTTATTaataaaatcatcaaaattaccATT
TTTGATATGGACAATATTACCGAGAAGTTTATCCAAGAACTTGACATCAA
GCTGTTGGACTTGTAGATGACTTGTTCTTGTAAAGCTCTAATCACGCTTA
CCTTTGTTTTATCTTTATGGACCTATGCACACtgtaaaaatattcaaaga
caGGAAGTGTGTTCAAAGGCTAATATTAAATTGCGAACTTTGAGAGAACG
TTTCACAGATAAAGTGCGTGATGCATGGCTTCCAGCTGCAAAGattaGCA
ATATCGACAGTAACGAAGCAAACATTCATTTTACGAGTGCTTTGAATTAC
CCTTCCAACGAGTTTCCTGTCCGTACTTTAATCACTCCTGACATGCTTGA
AATCTATCTCAACGCATTCACAGCTTTAAACACCATTTTCAATAAATGTG
CAAGGAAAACTACTGACTCGACCATCAAAGCTACGCTCAATAAGTTGGTT
CACCATATTGCTACTGTGATGAATGAAATCGACATTGCTATTAAGgaata
caaaaagtgtttgaaataccaaaaaagacAAGACTTACTAAAGTTCATTC
CCCAACCTCAGAAAGCCAACAATTTTGTTCAACTCAAAAGACAACTAAAA
GAAAAGTCGTCAAAAAACCATTCTGACCATCAACAACTTATTaataaaat
catcaaaattaccATTTTTGATATGGACAATATTACCGAGAAGTTTATCC
AAGAACTTGACATCAAGCTGTTGGACTTGTAGATGACTTGTTCTTGTAAA
GCTCTAATCACGCTTACCTTTGTTTTATCTTTATGGACCTATGCACACtg
taaaaatattcaaagacaGGAAGTGTGTTCAAAGGCTAATATTAAATTGC
GAACTTTGAGAGAACGTTTCACAGATAAAGTGCGTGATGCATGGCTTCCA
GCTGCAAAGattaGCAATATCGACAGTAACGAAGCAAACATTCATTTTAC
GAGTGCTTTGAATTACCCTTCCAACGAGTTTCCTGTCCGTACTTTAATCA
CTCCTGACATGCTTGAAATCTATCTCAACGCATTCACAGCTTTAAACACC
ATTTTCAATAAATGTGCAAGGAAAACTACTGACTCGACCATCAAAGCTAC
GCTCAATAAGTTGGTTCACCATATTGCTACTGTGATGAATGAAATCGACA
TTGCTATTAAGgaatacaaaaagtgtttgaaataccaaaaaagacAAGAC
TTACTAAAGTTCATTCCCCAACCTCAGAAAGCCAACAATTTTGTTCAACT
CAAAAGACAACTAAAAGAAAAGTCGTCAAAAAACCATTCTGACCATCAAC
AACTTATTaataaaatcatcaaaattaccATTTTTGATATGGACAATATT
ACCGAGAAGTTTATCCAAGAACTTGACATCAAGCTGTTGGACTTGTAGAT
GACTTGTTCTTGTAAAGCTCTAATCACGCTTACCTTTGTTTTATCTTTAT
GGACCTATGCACACtgtaaaaatattcaaagacaGGAAGTGTGTTCAAAG
GCTAATATTAAATTGCGAACTTTGAGAGAACGTTTCACAGATAAAGTGCG
TGATGCATGGCTTCCAGCTGCAAAGattaGCAATATCGACAGTAACGAAG
CAAACATTCATTTTACGAGTGCTTTGAATTACCCTTCCAACGAGTTTCCT
GTCCGTACTTTAATCACTCCTGACATGCTTGAAATCTATCTCAACGCATT
CACAGCTTTAAACACCATTTTCAATAAATGTGCAAGGAAAACTACTGACT
CGACCATCAAAGCTACGCTCAATAAGTTGGTTCACCATATTGCTACTGTG
ATGAATGAAATCGACATTGCTATTAAGgaatacaaaaagtgtttgaaata
ccaaaaaagacAAGACTTACTAAAGTTCATTCCCCAACCTCAGAAAGCCA
ACAATTTTGTTCAACTCAAAAGACAACTAAAAGAAAAGTCGTCAAAAAAC
CATTCTGACCATCAACAACTTATTaataaaatcatcaaaattaccATTTT
TGATATGGACAATATTACCGAGAAGTTTATCCAAGAACTTGACATCAAGC
TGTTGGACTTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009719-exon-sc0000098-1491911889:520508..521841 | TCONS_00009719-exon-sc0000098-1491911889:520508..521841 | Clytia hemisphaerica | exon |
| TCONS_00009719-exon-sc0000098-1510915933:520508..521841 | TCONS_00009719-exon-sc0000098-1510915933:520508..521841 | Clytia hemisphaerica | exon |
| TCONS_00009719-exon-sc0000098-1575043694:520508..521841 | TCONS_00009719-exon-sc0000098-1575043694:520508..521841 | Clytia hemisphaerica | exon |
| TCONS_00009719-exon-sc0000098-1491911889:523147..523236 | TCONS_00009719-exon-sc0000098-1491911889:523147..523236 | Clytia hemisphaerica | exon |
| TCONS_00009719-exon-sc0000098-1510915933:523147..523236 | TCONS_00009719-exon-sc0000098-1510915933:523147..523236 | Clytia hemisphaerica | exon |
| TCONS_00009719-exon-sc0000098-1575043694:523147..523236 | TCONS_00009719-exon-sc0000098-1575043694:523147..523236 | Clytia hemisphaerica | exon |
| TCONS_00009719-exon-sc0000098-1491911889:524377..524538 | TCONS_00009719-exon-sc0000098-1491911889:524377..524538 | Clytia hemisphaerica | exon |
| TCONS_00009719-exon-sc0000098-1510915933:524377..524538 | TCONS_00009719-exon-sc0000098-1510915933:524377..524538 | Clytia hemisphaerica | exon |
| TCONS_00009719-exon-sc0000098-1575043694:524377..524538 | TCONS_00009719-exon-sc0000098-1575043694:524377..524538 | Clytia hemisphaerica | exon |
| TCONS_00009719-exon-sc0000098-1491911889:525137..525494 | TCONS_00009719-exon-sc0000098-1491911889:525137..525494 | Clytia hemisphaerica | exon |
| TCONS_00009719-exon-sc0000098-1510915933:525137..525494 | TCONS_00009719-exon-sc0000098-1510915933:525137..525494 | Clytia hemisphaerica | exon |
| TCONS_00009719-exon-sc0000098-1575043694:525137..525494 | TCONS_00009719-exon-sc0000098-1575043694:525137..525494 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000098 | supercontig | sc0000098:520508..525494 + |
Blast
The following BLAST results are available for this feature:
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