TCONS_00009705 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009705
Unique NameTCONS_00009705
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009705 ID=TCONS_00009705|Name=TCONS_00009705|organism=Clytia hemisphaerica|type=transcript|length=2492bp
AAAACGTGTATCGTTACGAGCCTTCTTTTACAAACATCTTGAAATAAAGT
GGACGAGATTGGTGGATTAACGCAGAtttggaaaattgaaattaCACAAT
CAATGGTCTCGTAAACTTACCGGCTTACCAAGCGTTTAACTAACTTTGTT
GCTTGACCAGGTTTGGCCGCAGATAGCGATAAAATTGTAGAAACAGTATC
ATATCCAAAAACTAAAAAGAAGACTTTTTCAGAATCATATATACAGAACA
TTAAGAACAACTTgagaacaacttaagaacaacttaagaacaacttaaga
acaaCACCATGACTATCAGTTCAGATTGTGGCGACAATTCTTTCGAGTTA
GAATCCTATTCCAGTGATTGTGATTCCGGTCATATATCTTTGGACGATTT
CCCGTTAAGTCAAGAAGAAATCCAAGAAATTTACGACGAGTTAGATTTAG
ATGAGGAAGGAATCACCGAGGACGAAATCACTCGTCGTAAACGGCGAATA
TTTGTCGGTGGCTTGAAATTCGCATCCGAGGACATTGTTTTGCatgaata
ttttcagcaatttggGAAGATTAAGGAAGCTGTTGTTATCAAGGACAGGA
AAGTTGGCTTGTCAAGGGGCTACGGATTCGTGACAATGGCTTGTGATATG
TCTTCTTTGCTAGCCATCATGGATAAATCACCAAAGTTGGACGGAAGACG
CTGCAATGTCAATCTCGCATACATCGGACAGAAGAAAAAACCACCTTCGA
GAAAACCTGATTTAAAATTGAAAGACTTGTCACCTCTGCAAGGCCAATTC
TTCCCGTGCAATCAGAATGGTGGTGGTTACATAGTCTCTCCTACCGTCGT
CACACCCAATGGGTACTACCAGCTTGGTCTACCACCCCTTCACGGCTACC
AACCTGTATATCAAATCCCGCAAAGCCCTCAACCTTGCTACGAGTCAGAT
ACTACCTACTATGGTCCTAATAGCCTGCCACCTGCTTCTCCAATGTCACC
TGCCATGTATCCACAGCAGCCTATTTACTACACACAACCGCTACTAATTA
GTAACCATCCTCAGGGTGGAAGCCTAGCTACCTACCCCAACCAACCCTAC
CAGCCAACAACGGTAGGATCACCAAGTGACCCCAACAATAATATATTGAA
TGCTTCCTCCGAGAACCTCACCCTGGATGCTAACAATAACAACAACCCGG
TTGTCGCTCAAACCACGGTGGTACCCTCTACCTACGGGATGGGTACCTCA
CAGCCACCACCCCAGATACCCTACAGTCCGGTGTCCTCCACCACGGCCGT
CAACCCAACCGACATTGCAACGTACACACCTTCGACTTACACAGACACAG
CACGACAAGTTCTGAACATCAAACAGACCGGTCAAAGCAACCTCTTAACA
CAAATGCCTGTTGTCAATAACCCCTTATCTACACCCGGATTGAGTCACCC
AGCCACTGGTAATCTACTCATAAACGGTACACAATTGATCCAAAGTGGTG
CACACACCCAACTGGTTAGTGTACCTGCTCACGCCCAACATAACAATGGT
GGCGGTCCGCCCGCTTCTCCCTATGCTACTTCTCCGCTCACAACTACATC
TATTCcgaatcaaaatcaaatctatGCGGTACATCCACATAGCGGACACC
ACCAGCCGCAATATATACAACAGCCCAGGGAAGtggttcaaatataaaaa
agtaaTAGGGTGAATTTGGCGGGACTTGATGTACAAATTACAGACCCGAG
TCCTGAGCGTATGGAGACGCCATCTTTGAAGCCAACCGACATGACGTCAA
TATTGGGTTTTCGGTAGACAATATCCAATGATGAAATGCAGCTTTTGGCG
CTATATAGAGGAAGTATTATGACTGTTTCTATAGAAACTTACCCAGAATT
CTGTACTggaaatttgaaaggaaaaacattcaagcattagacagaaaaaa
aatcgaatgccGGAATCACAAGTCATTGAAaatgtaaaattcaaaaattt
catgtATATGtatataaaaagttattttcgtttttaaaatCGAACATTCG
AAagaaaatcttctaaaatttgaaaacatagAAGCCctcataaattaaat
ttttcttgtctTGGGTCTTCTTTTAAGAGATTCTTTCCACTTAAAAAATT
ActaaatcaatgaaatttttCGGTGACGTTAAAATGCTTTTATATACTGT
TATAACATGATAAAATTTAACAattatttaatattttagatgTTTTTTAT
ACATATATCATTAAAAATAAACTATTATTTTACTGTTATCCCTAATATTA
TAcacatttaaaaatatttctttattatAATCTCTTATTAAATGAGATTT
tccatctttttttttctcgaaaatcgatCATTTTTAGAGATTGATAAATA
TCTAGTTTGTAAGAGGTGAAATCAATCAATTAGCAATCGAGattaatcga
acgcaatcgagattaatcgaacgcaatcgagattaatcgaac
Run BLAST on NCBI

transcript from alignment at sc0000098:199069..214196+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009705 ID=TCONS_00009705|Name=TCONS_00009705|organism=Clytia hemisphaerica|type=transcript|length=15128bp|location=Sequence derived from alignment at sc0000098:199069..214196+ (Clytia hemisphaerica)
AAAACGTGTATCGTTACGAGCCTTCTTTTGTAAGTAcaagttttttgaat
ttccaatCTTTGTCAAGCCTctcatgttcttaactttttggagtTTCAgc
ttaaaaaaatgttcttaaaatgttcttaatctcACCATCTTGCTAATATT
TCCTAAGAATTCGGGCGCTTCATAGTCCACAAAGCGTTATAATGTTCTTG
ACTTGTtcctaacattttggccatcaaagccttatattcttatcaGTTTT
CCTCTGTAAAGTAAACTACAATTTTTCTGACCTGAATGGTTGGTAGATAT
TTCTCTCTCGCGTGTATCAATAAATGTTTTTAGTGTGAAAAAATCAGATC
ATGTTTAAGCAGTAGTATAATAGGTCTTCTCAATGTCAGATTTCGACTTC
ATATCCtcttttgattgacattcaaaTGTTCTTGACGACCTCCAGTTGTT
GCGTGTTTTATTTCCAgttgctttataagaacatccaaaaatatttgaag
ctcCCGGATGTtttaaagcttaaaaatgttcttaacatattctaaTATGA
GTATTcctttttctaagaaattgttGTTTTAGATTCTGCAAagttttaaa
ttgttcttagcttgttcttaacattttggctatcgaaggcttatgttctt
gtataggttgtttttataaaaaacgtgcatgtAGCTGTTTTAGAGCATCC
GTAATATGAATTGTGAAGGGCAATAGTTGAGTTGACGAGAGTCTTTCCTG
TGACTTTGATACAgtaaactctctctaattcgaacctctataattcgaat
ctttctataattcgaactaaaacatcggtcccctcagctggaaagtagTA
TGAAATACTTCCCGTGATCCGAATCTTTCTatcgaagaaaatgtttgatc
GAATTAATAACTATCCCTTCTTGATCCTCAGATACGAATCtcaaaaatca
acattttacaTACATGTAATAATAAGTTTATTCCTCTTAGGGGTCCTTGG
AAGTTAAAAGTCTAGACGAGTCCACTCCCTTGAGTAACCTTTTGGTAATT
AATTTATAATATCTCACATTTGCTTTTGTGGCCTTAAAACACCTACGAGA
ATATTTCTTTACAATAACCCCTCTGTGCCTCAGTGCTATTTTCTTTTCAC
CCCATTTGTATTTTGTTTGCTGtgtatacgttttttataagaacaaacta
tatagatagccaaaatattaaaaataagtcgagaacattttaagagttTG
CAGAATctaaaaacacccaatttcttaggaaattgtacGAAGTATTCACA
ACATGCtaaagataagaacattttgagaacattttaaggcttaaaactca
aaatttagtaatctccgaaagcttcaaaaatgttggatgttcttatgaga
AAAACGTGGATTGAAAATACTGGTTTTTGGACCCAAAAAATCCGAGGAAT
GAAACAGCtcattttcaatgattttcatattatttttatatactattttt
tcattctttggtCTGCTGAAAAAAAGGGGAACTAGAAAATTTCTACTGTA
TCACCATGATAGGTTTATTTTCGTGTTATTCAAATTGTTCCTCGTTTTTT
GTTGTTGTGTAGAGTGGGGTGGTATGAAATGGATCCGGGGGTATACCCAC
TAGAGTTTATGACCCTGTGAGGGAGTCGATTACTGAAATGGATccggggt
actaggtttgctaggtgacgggtatgttttcgagccaaagttcgaaaatt
gaCTCTgtaagagattttcaaactgtTGTCCAAAATACGAGAATTTATGA
GACTTTGATGGAGTTGATTTTTGATACTTCGTGATTTTGGGCCGTTGTCT
GAAATTCACTCGCTAAGTTATGGTTTTTGTTTCCCTGTGAAGGTGAAAGT
ACCCCtaggctgttcttattttctttgtatttcgAACGTGAAATAGTTCT
TGCCCTGTTTTTTATTTCTAGTGTAAAATTGAGATATTTTAGGTTGAATA
AAGGTTGTCACAGGTTGTCATAGTATTATTTCGAAAGCGAGGCAAAGGTT
ACTCACGGAGAATTATTTATGAAAAAGTAGTTCTTTAAGATGCATAAGAA
TACTTTTAGATTTCTTATCATAGTTGTAGAGACATTTGGAAAAAGAGAAC
CCagctacacttttttataagaacacttttataagaaaaatgagactcaa
aaattgccaaaaaataaaaatatatcaaaaacaatgctgagcctgaaatt
actcaatttcaagcaattttatGGGTCAAAGttgtaaaaattgggtaaag
agcctaaaatatctcaaaattacaccctataaataagaacaggataagaa
caatttgagtctcaaaatgccaaaaaaataagaacaattttactgGTTCT
CTTAAAAAGAACAAGTCGACTGTATACAATACGAGGCATATTATGTCTAA
GTGCttaaaaaattcaagagaaaaaaaaacacccccttaACAAAGCTTAT
TACCAAGCTTTTCTTTCTTGCTTTAGTTCACGCGTAAAGCTAAGTAGGGC
TTGATACGTCGCTTAAGTAATGTTAGCGTCAGCAAATCTTATAAGTTCTT
TGTCTTAAAAACCTATACACAATACTCATTAGATATAAAGATCGACTTAA
ATATTTTGTGTTGAGTCTTTAAGCTTTCTCTATATTTTACCTAAcacctt
tctttttttttttgaaatatcattttctttctttcaaactTTAGAGTTCA
CTTCGCTTTAACTTCAACAGAACTACTTCAGACAGAATGTTATTATCTTG
ttgtgaaaatggttttttttctaCGCTGATAACGCTCTGtacattgtttt
gatttctctTGGGGTCTTAACCTTTGTTTTAAAGGAAGAATAAATTACTC
CTCTCGACAAGAGATTTCAATACATGATAAACAGTTTCGTAGAATTAGCT
AAGAGACCTGTAAAGTGTTTCCTTATGATGGAAATATCTCGCTTTGGGAT
ACTTTTTGTTTGCTCAATGTTACATTGTTGCAGGATTTTTTGAGTGCCAA
AATACTTTGAGTGCCCCCCTTCGGGCTTTTTTCACAGCTATACAGAACGT
CTTAGCAACGTCCATATGGCGTCTTTAACGTTCAAACAACGCTGTATGTC
AGCTTTTTTGGTACTTGTATCACCAACGAGTTGAATGTTGAAAATATGTT
CTAAAATCGTTATAAAACAAttcattcatgatatgcatAAATTCGacgtc
ttctgacattacatgaCGGACCTATCAgttgattggttgcaagtgatgtg
ttgactgattttacgtcactttaaACATTAATCACCCACCCTCAAGGTTA
CCCACCTAGCTTTATGACTTTTAAGTTTAAATATGTTCTTAAATGTCTtt
aatttcactattttgtgagtatttttgtgcaacttcctaagaaattggct
gtttaGGGATGGACAGTTGCaggcttaaaaatgttcttagcttgctCTTA
GTATTTTGGTCAttgaagccttgtgttcttatctAAGTTGGTCTTACAAA
AAAGCtttatgaattttaaatttaaatgtgtTCTTTTGTGCAACTTCCTA
AGAAACTGGGTGTTTTAGGGTCcattaagccttaaaatgttcttagcttg
ctCTTATTATTTTggtcattgaagccttatgttcttatctaagttgttct
tataaaagtgtGTATGTCCTTTGAAATCGAAAAGAATTTGAAGCGCAGTT
CATCCTTCCGGTGTGTTCAATTTTCACCACGCTAGAAAAAAGCATTTCTC
TAAAGAAACCGTGTCGtagttcttaacattttgaccctcgaagccttacg
ttcttaaatagtttgttcttataaaaaagctttatgaGTTTTAAGTTTAA
ATATGTTCTTTTGTGCAACTTCTTAAGGAATTGGGTGTTTTGTCTTTTGT
CCATTAAGGCTTATAAATGTTctgaacttgttcttaacattttggccatc
gaagccttatgtttttatatagtttgttcttataaaaaaaagatgtACGG
GGGAAGGGACAGTTTCATTATTACCTATGATGAAAGACattttttcactt
cattttatttcttcttcatttttcatatatttATCATAATGTTAACCAAA
GTTTTTATTTATTGTTCAAAAAATTATCTTCATCATGATATAGTCaacta
acccccccccccaaacatGATAATTTAGACCTTACtactttttctataag
aacaataaaaaaCATCAGAGAGGTTTTTcgtatccgccattatggaagca
aacgttcgatttgcgtaagggatttcctctacagattcgaatgtttgctt
ccataatggcggaaattacgtaaaaaAACCTCTATTGGGCATTGACAAGT
AAAAAAATGTAGGAGctttatttagtcgggttttttttcgtcggggaaaa
atttcgtcatctagaggcattttcgtcccTCATTTCAccatctcaaaatt
tttgacactttcccccgacatttttttccctgataaggtatTCCGATATT
TGTCGAAAAAAACCCAGTTTTCTGATGCTCGTTGGAATATCTTTGACCGG
TACGCCagtattttatgaaaaaaaattaccttttttagTCTTGAGACATT
AATTTTTCTATGATGAGACGAAGAACATTTTTCCATGTTCAGTACAATCG
CATATAAACTTTAAGAAATATGTATAGTTTGTCTTTTAAAGACTTTACGT
GACTTTATAGGGCATTATCATAAAAAGGCTAGGGCACTATAAGCTGTTGA
AATTAGAAATTAAAGCTATTTCTGAAAGTTTTACTACCTACCTGCTTTTC
ACACGAACGTCTAAGCTAGTTTTCACTAGGATacatctgatggtaagttg
tgaccaAGTATTCCAAGGCAGACTtgaaatccgtaaatataaaaaaaact
ttaaagcgcaaaaagcgctatattgccattagccgtttatcctagccttg
tgaatacgggtgtagttaactaggctaggtTAAAAGCAAGGTCTAATGGA
TCTGCGCGAAAATCGTTAAGAAATCTTTAGACTTTACTCCATTAAAAAAA
GGTTTCATTTGCTAACCTCAGATCGAAGTTTGGGGCttcaaatttattga
aaagtttaaCCTACAAACTGTTATTTTACtctctgttcttataaaaaaaa
tgcatTTGTGAAAAGTTTATTTAAAAGAACCCTCTCAGCTATATCCTAAT
TAACGCGCATTTAAAAAAGTATCGGTTTTAATAGAACTCTAATTTTCCAA
AGAACgcagtcttctttttcttttttcttcttccttattttctttcttcc
ttttttgagatctattttttttcatttaaaagctAATAGGtctaaacaaa
aaatatcactAGAGAATTGATATTATTTCTATCCTTGAAAGGTTTTTAGT
GATAATATAGTGACGTGGCTTTTCAAGGGGCattttaaatttatattttt
cttggtCAGATATGTGTACAAAGTACAAAATTTTTGGTTAAACCAGCTAC
TAAtgacactcccttctcacagctccggtaggattctttcagtcagtggg
gatagaaataacGGAATTGATGGGGATAGATATTACcatgttttttttat
ggctggggatttaaatgcCGTTGTTTTCAAGCCGGAAATTCAGTGGCGCA
ATATTTTGCANATGGCTGTGGATTTAAATACCGTTGTTTTCAAGACAGAA
ATTCAGTGGTACAATATTTCGCAGTGCATATTTTGCAGGATTTCTTTATT
CGATTATATTCGTTGCGGACAGAAATTGGACTATAATTTTGCACGGGGGA
CGATATTCTGGCCATATGGTTCCACCGGGACTGTGTACTGTTAAGGGGGT
GTACTGAGTATTTTTGAAGTTTGACTAGcgagtttatttatttttacttt
tgagGACAATAAAGTGATTTGGAATAACTCGCAGTTTTGACCCGTAAAAT
CGCATTTACAGTCGTCCTCAGTCAATCAGAATCCAGTCATACACATAAAC
TCGGTACTATCCAGAAATGAGGTATTGGTGGCAGAATTTGACATGGATAT
CTGAGATATATTCAAAACAACAGGCTCTAGAGAGCAAAGAAAATAACATC
TTAGATTTAAGTACTGATAGGAACTGAAAAAGAATATTAAGTGTTAGAAA
GTTTTACAAATGAAATCTAAGCTCCGGATTTCTCCGGGATATTTTGGAGT
AGTactgagtttatgtatgtgttttTTTCAGCGACGAACatggtaaggtt
ctaatttaacatgaccaactgaggacgacggcaaatcagcacttttaccg
tcctcgattttgcgggtcagaagtgtgggtttttccaaatcgcttcagtc
actttaccgtcctcaaaagcgcaaatatataaactcgctattatttATCC
AACAgtctagtttgagtaaagaaaacgacttaagttaatttcatactcaa
agtttcatcaCATACAGGATGGCTATTTTCAGTGAAATAAACGTCCCATA
AACGtaattacagttgactctcgctaattcgaactcgaacggagAATCTT
atttattcgaattacagagagattcgaataatagaaagtattttaagagg
atTTTTCCTTGACGGGGgctggaaacaagttcgaattataggaagattcg
aataatagaagttcgaattagagagttgACTGTGAttaataaaatgataa
ataaatgtaaattaatgtCTTACAAATtatcttctttttgttttccaGAC
AAACATCTTGAAATAAAGTGGACGAGATTGGTGGATTAACGCAGAtttgg
aaaattgaaattaCACAATCAATGGTCTCGTAAACTTACCGGCTTACCAA
GCGTTTAACTAACTTTGTTGCTTGACCAGGTTTGGCCGCAGATAGCGATA
AAATTGTAGAAACAGTATCATATCCAAAAACTAAAAAGAAGACTTTTTCA
GAATCATATATACAGAACATTAAGAACAACTTgagaacaacttaagaaca
acttaagaacaacttaagaacaaCACCATGACTATCAGTTCAGATTGTGG
CGACAATTCTTTCGAGTTAGAATCCTATTCCAGTGATTGTGATTCCGGTC
ATATATCTTTGGACGATTTCCCGTTAAGTCAAGAAGAAATCCAAGAAATT
TACGACGAGTTAGATTTAGATGAGGAAGGAATCACCGAGGACGAAATCAC
TCGTCGTAAACGGCGAATATTTGTCGGTGGCTTGAAATTCGCATCCGAGG
ACATTGTTTTGCatgaatattttcagcaatttggGAAGATTAAGGAAGCT
GTTGTTATCAAGGACAGGAAAGTTGGCTTGTCAAGGGGCTACGGATTCGT
AAGTATTTGTTATTGAATTTTTATGGCTGATCCTTTTctaacttttctat
ttttaggtGCCTTATAAACCCCCTTCCTCGCCCTCCCCCTGTTTGttaat
tttagaataaaagtaaaatggcatttttgtgaagtATTAGACCCAATACT
TGGGGATAACTAAAATACTCAGAAATCGACTTTTTTCGGTATTGACTATT
CGTAGcatatttttaattctttggCCAATATAAAGTATATTCATATAAAA
AAGCGCCCACGcccatttatcaaaatttaaagatCTTTACTATGTTTCaa
ccttaaccctattagccccagggggggggggtagaatctacctagctgga
gttcttttgtttatatctcggagaaaaatttttcaaacgacttgaaactt
tctgacttttaataaaatcttattaagagtacttgtacaaAATNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggcaactcc
tgaacttgggcacaggatgtacggttacacattttgtggattgcattgtg
gagtcacaagagtgctcaaactgcgAGCAGCGAGCAATGCTTAATGCAAA
TAGTGAGCGTcttaaatgaagactctccacccaatccaagagtgctcaaa
ctacAAAAGCAGTGAGCAaatatacaatgtatagcaatgtgccctcccgg
ttattaccataatggctttatggcaactcctgaacttgggcacaggatgt
acggtgtAACTTTAGTTTACATATTCATTCATATTACATAATACATATCC
CCCCGCGGCAGTGGGGAGGGCCAGCCGGTCCTTGGcccgaccacattttt
tcaaagtaaaaagaaaatgtaCTTATCAAGCCAAATTCTTTTTAATAACC
TTAAAACAGACCTGTTTTAGGCGAATACAAgagctaaaattcaaaaattt
taacccGGCGGCCcgaaccatggtggcgcctccttagtcagTATATCTTT
GGCCTTCTCACGTTCAAAGTGGAGCCGAGGCCTCTGATATTCCTTGTAGC
TTATCACTGCTGATTCGCTTGGGATATAGAAGatattattcgatgaaaat
tcaattcctGTAGTTGACTctttctaattcgacgttctacgcTTCCTACG
CTCGCTCGGTAATATCGAAAGTCAATTGTCAAATGTCAACAAGTACCTCT
CATAAAtaacgttctactattcgatacgttcCCTTAGTTGAAGAAGATCC
AactccccttgaaaatcgaattagagagtgtcgaTTATAAACCTCTTTGA
ACGaacttataaaacaaaatttaaaacttaCAAAATAGCGACAATTCAAC
ACTTGgcttacacttttttataagaataaactatataagaacataagact
tcgatggatgaccaaaatattaacaacaatttaagaacattttaaaggct
ttgtagacacTAAAACACCtaattttttaggaaatttcgcaaaaaatact
cacaacattttgaaaacatttttaagctagaaacataaaaaggcttcaag
aatttttggatgtttttatataaaGGAAACGTGTGCTTGATATACAAGCT
TGTCGTCAAAGGGTCTTTAGCAGGCCTTATAATCACTAATATCTCATGAC
ATTAAGTCATTTTTAAGACTTCTAATTTACATTGTCAGTTGTTGTGTTTT
GAAAGCAGCTTATCTTTTCGCTCTGTTATGGTTTCTATGGTGTTGAGACT
GCCTTCCTTCTTTGCAAGGATGACTTtatccattacgtaatgttttctgc
GGAAACGAAACGGTTGTTTTTTTTGctagtagtggcaaatttaaggtacg
ctttttttatataagagcaATTTTATAACGACAATGAGgttcaaaatcgc
caaaaaataagaacaatttataaacaatgctgagcctgaaattactcagt
ttcaagcaatttaggggttaaAGTACTAAAAATAGGGTGTGACACCttaa
atacctcaattacaccctattaataagaacaagtgaccgggtagctcagt
cggtagagcattcgccttacaatctaagggttgtgggttcgatccccggt
caccgccaactcagcggatgagtagcttagattNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNagcttagattgggtaatctgatctaggcggt
aagttactgggagctgagagtaggtgtggcgctccacctcagcattcgat
ctcccaggtctagcacAAATAGAAAAAAGGATAGACTCCccgctccgccg
acagccaccagatgaatatactttaCTTACTAataagaacagaataagaa
caatttgaagctcaaaataagaacagtcaagcctcagaaaaaatttactg
gttcttataaaagaaagtgtaccgaaaaatagtttaaaataaGTTGTATA
AAATAAAGATGTTTTTACACCTCAggaaaaaccaataaaattgcGTGTAG
ACCGAAAGTAGactttatttgaaaactttgCAATAGTGTTTGGAAACACA
CGCGGTTTTTGTCAGTGTTGACTTATTTTAAACAATCCGCACTGCCTGAA
AAACTGGGATTTCTGTATTCTATAtgtcgagaaaaaaatgatattttctg
aCATTTCCTTGGAATAAATATCATCTTTTCCTGTTTTTAGAAAAGACGAT
CTTTATTTGAGtatatttgatattttcgtCAATTTTTGTAGCGGAAAGTT
CACATTCAGATCTTTGCCCAAACAAGaacttcatattttcaaaaaagtaa
atgtGCCGAAAGTTCACATTAAaacatatatttttccagggTTTTCACAT
ATCATAAATCCCAGTTTTTCATGCAGTGCCGGgtaaaaaacattacgtca
tggatGTCATGAATACATAGAAAACATCATTCATTGTGAAAACGCGATCG
TTTGATACAAGTTAACCCTATTTTTACGGGGATGTATTTTATACCACCCA
CCCTGTCAATATTTAGCTTCGACCCGAACTTTTTcgacaaaaacttttat
tccAGAAGTGTgctaaaaaagggaaattttgtgaattttacgacccttat
tgggacagatttgaccaaatttcgatctttacgggggtaaaaagttgaaa
ttttcctatttctccgacccttaatgagactgaaatttgattgtttgatt
tttccgacccttagcgggactttggaaatccaaaaaaggtacccttaagg
gcggcacataccgtacactccatttgcctaagtaccccccggaTTCATGC
ATGATTAAAATGATAAGAAAACCTTCTTCTGCTCTCTTTCTCACAGGTGA
CAATGGCTTGTGATATGTCTTCTTTGCTAGCCATCATGGATAAATCACCA
AAGTTGGACGGAAGACGCTGCAATGTCAATCTCGCATACATCGGACAGAA
GAAAAAACCACCTTGTAAGAAATTTCCTCCTGTCCACAGATATCATATTC
TTCTAATCCtagaccgtagcatgaaggtagagcatccagctacggtgcgc
aaggttgtgggttcgatccccagcctggtcataccaaagattcccaaaat
ggtacttgatgctaAGCAACTAAAAAGAagggtcaagggtaagtggagaa
atccagggaaaagaGTGGCGTCCCCTTACTTTGGGCAGACAGTGTTAGAG
AAAAAGGaaccttcgggtcgccctcgactgcggtcgcaaacttacttact
acttacaCCCTAGAAAGGCTAACTGCTTACAGATTTCCTGTCGAAGAATT
TCTAGTCTTGAATTCGACTAGTCCAACATGTTTTCCAATTTAccttagat
tttcgaacgttcgaatttcaaaacgttcgaatcgtGCTGTTTACGACCAG
AgttgaaaacaagatggcggactagTCAGCTCTAGATCTGAACATGCTTC
ATATATACAGGTCCcccgatccagtcaagtagttatAGATTAGTGTTCCT
ACCCAATGcttttataattgagtttttgatttcttttaccCAAAAAGTGA
CAATTAGATTACAAGTTTCACAAAAACTCCGCTCAAAGTTATTACTTGGC
CGGCGCGGGATTGAGAAACTACCTCAAGGGTTTAAATAAAGATCATTGAT
TGTGACTTTGAACATTTCCTATTTTACTTTTCAGCGAGAAAACCTGATTT
AAAATTGAAAGACTTGTCACCTCTGCAAGGCCAATTCTTCCCGTAAGcta
cccctttttttaaacttttttgatgtttatGGATTTATATAAAGACAGTG
TGCCCAAAAAAAGCggacaattttttaaataaaatacaatctatccgcag
acacgtgtttcgtccttcccaggactcatcAGTGCTGCTCGGGTAAGCGA
GCATAGGCTGTTGTTGTAAACAGAGTGTTCAAAACACTAAGTGTTGAGCT
TCTTATAGAATCGCTTGTGGTAAACGGAGAATTAGAGCTTGCTCCTCAAC
ACAGTCTATATAGAGTGTTCAACGAACCAAAGTGTTGAGTGTAGTAAATC
CTCATTAACAACCTCATAATTTAAGCGAAATTTTAAGACTCTCAGAAACC
TAGATATCCAATCATCTTTGGAATTGCATAtctatctattgattgaacag
agaattTTAATCTTATTTAAATTCTAAGCCCAGTTAAGATgatgagtttt
gaggattttgagACACGTTGTAATGTAGAGAGCTTGGACTTTCTTAAATA
caagactttttcataaattacgtcacgtcCAACCTTAAAAGATAAATTGT
CAAAATGAGACTAGAGTTGATGGTGACgtaataaaagtttttcaacTTAT
TCTATATAATTTGTTTAGAGGTCTTTCAGGTTTTAGAAGGTTGAAAAACc
tagcgggaaatttttattagGCGACCGCAATACAATTTGAATGTTCCATA
ATGGCAGTGTCATTGACGTAACTTAAAACCAAACCTAAAAtaccttacac
gtttttttataagaacatctaaaatttttgaagtcttggGAGACgttttt
gagtttcaaacccaaaaatcttctttaaacttgttcttattttgaccaat
ttctgagtatttttgtccatttcccaaagaaattgggtgttttggaCTCa
cgaaagccttaaaatcttcttattttattttttaatattttggtcatcga
agacATCGAATGTttttacatagtttgttcttataattcAGGTGCAATCA
GAATGGTGGTGGTTACATAGTCTCTCCTACCGTCGTCACACCCAATGGGT
ACTACCAGCTTGGTCTACCACCCCTTCACGGCTACCAACCTGTATATCAA
ATCCCGCAAAGCCCTCAACCTTGCTACGAGTCAGATACTACCTACTATGG
TCCTAATAGCCTGCCACCTGCTTCTCCAATGTCACCTGCCATGTATCCAC
AGCAGCCTATTTACTACACACAACCGCTACTAATTAGTAACCATCCTCAG
GGTGGAAGCCTAGCTACCTACCCCAACCAACCCTACCAGCCAACAACGGT
AGGATCACCAAGTGACCCCAACAATAATATATTGAATGCTTCCTCCGAGA
ACCTCACCCTGGATGCTAACAATAACAACAACCCGGTTGTCGCTCAAACC
ACGGTGGTACCCTCTACCTACGGGATGGGTACCTCACAGCCACCACCCCA
GATACCCTACAGTCCGGTGTCCTCCACCACGGCCGTCAACCCAACCGACA
TTGCAACGTACACACCTTCGACTTACACAGACACAGCACGACAAGTTCTG
AACATCAAACAGACCGGTCAAAGCAACCTCTTAACACAAATGCCTGTTGT
CAATAACCCCTTATCTACACCCGGATTGAGTCACCCAGCCACTGGTAATC
TACTCATAAACGGTACACAATTGATCCAAAGTGGTGCACACACCCAACTG
GTTAGTGTACCTGCTCACGCCCAACATAACAATGGTGGCGGTCCGCCCGC
TTCTCCCTATGCTACTTCTCCGCTCACAACTACATCTATTCcgaatcaaa
atcaaatctatGCGGTACATCCACATAGCGGACACCACCAGCCGCAATAT
ATACAACAGCCCAGGGAAGtggttcaaatataaaaaagtaaTAGGGTGAA
TTTGGCGGGACTTGATGTACAAATTACAGACCCGAGTCCTGAGCGTATGG
AGACGCCATCTTTGAAGCCAACCGACATGACGTCAATATTGGGTTTTCGG
TAGACAATATCCAATGATGAAATGCAGCTTTTGGCGCTATATAGAGGAAG
TATTATGACTGTTTCTATAGAAACTTACCCAGAATTCTGTACTggaaatt
tgaaaggaaaaacattcaagcattagacagaaaaaaaatcgaatgccGGA
ATCACAAGTCATTGAAaatgtaaaattcaaaaatttcatgtATATGtata
taaaaagttattttcgtttttaaaatCGAACATTCGAAagaaaatcttct
aaaatttgaaaacatagAAGCCctcataaattaaatttttcttgtctTGG
GTCTTCTTTTAAGAGATTCTTTCCACTTAAAAAATTActaaatcaatgaa
atttttCGGTGACGTTAAAATGCTTTTATATACTGTTATAACATGATAAA
ATTTAACAattatttaatattttagatgTTTTTTATACATATATCATTAA
AAATAAACTATTATTTTACTGTTATCCCTAATATTATAcacatttaaaaa
tatttctttattatAATCTCTTATTAAATGAGATTTtccatctttttttt
tctcgaaaatcgatCATTTTTAGAGATTGATAAATATCTAGTTTGTAAGA
GGTGAAATCAATCAATTAGCAATCGAGattaatcgaacgcaatcgagatt
aatcgaacgcaatcgagattaatcgaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005426XLOC_005426Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009705-exon-sc0000098-1491911889:199069..199097TCONS_00009705-exon-sc0000098-1491911889:199069..199097Clytia hemisphaericaexon
TCONS_00009705-exon-sc0000098-1510915933:199069..199097TCONS_00009705-exon-sc0000098-1510915933:199069..199097Clytia hemisphaericaexon
TCONS_00009705-exon-sc0000098-1575043694:199069..199097TCONS_00009705-exon-sc0000098-1575043694:199069..199097Clytia hemisphaericaexon
TCONS_00009705-exon-sc0000098-1491911889:205867..206466TCONS_00009705-exon-sc0000098-1491911889:205867..206466Clytia hemisphaericaexon
TCONS_00009705-exon-sc0000098-1510915933:205867..206466TCONS_00009705-exon-sc0000098-1510915933:205867..206466Clytia hemisphaericaexon
TCONS_00009705-exon-sc0000098-1575043694:205867..206466TCONS_00009705-exon-sc0000098-1575043694:205867..206466Clytia hemisphaericaexon
TCONS_00009705-exon-sc0000098-1491911889:210615..210732TCONS_00009705-exon-sc0000098-1491911889:210615..210732Clytia hemisphaericaexon
TCONS_00009705-exon-sc0000098-1510915933:210615..210732TCONS_00009705-exon-sc0000098-1510915933:210615..210732Clytia hemisphaericaexon
TCONS_00009705-exon-sc0000098-1575043694:210615..210732TCONS_00009705-exon-sc0000098-1575043694:210615..210732Clytia hemisphaericaexon
TCONS_00009705-exon-sc0000098-1491911889:211453..211510TCONS_00009705-exon-sc0000098-1491911889:211453..211510Clytia hemisphaericaexon
TCONS_00009705-exon-sc0000098-1510915933:211453..211510TCONS_00009705-exon-sc0000098-1510915933:211453..211510Clytia hemisphaericaexon
TCONS_00009705-exon-sc0000098-1575043694:211453..211510TCONS_00009705-exon-sc0000098-1575043694:211453..211510Clytia hemisphaericaexon
TCONS_00009705-exon-sc0000098-1491911889:212510..214196TCONS_00009705-exon-sc0000098-1491911889:212510..214196Clytia hemisphaericaexon
TCONS_00009705-exon-sc0000098-1510915933:212510..214196TCONS_00009705-exon-sc0000098-1510915933:212510..214196Clytia hemisphaericaexon
TCONS_00009705-exon-sc0000098-1575043694:212510..214196TCONS_00009705-exon-sc0000098-1575043694:212510..214196Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:199069..214196 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.102001	8.47941e-06	0.265691	3.62168	88.761	68.6933	34.7042	45.185	23.065	38.2999	10.233	20.3546	0.742259	0.573041	0	0.0884546	13.9104	11.1291	1.86797	1.30657	4.61062	5.31566	4.19921	4.1955	2.07122	1.94618	11.1682	9.35435	1.05664	0.737084
Blast
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BLAST of TCONS_00009705 vs. Swiss-Prot (Human)
Match: RBM38 (RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 9.861e-22
Identity = 44/78 (56.41%), Postives = 57/78 (73.08%), Query Frame = 3 
Query:  495 RIFVGGLKFASEDIVLHEYFQQFGKIKEAVVIKDRKVGLSRGYGFVTMACDMSSLLAIMDKSPKLDGRRCNVNLAYIG 728
            +IFVGGL + + D  L +YF+ FG I+EAVVI DR+ G SRGYGFVTMA   ++  A  D +P +DGR+ NVNLAY+G
Sbjct:   35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLG 112
The following BLAST results are available for this feature:
BLAST of TCONS_00009705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBM389.861e-2256.41RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE... [more]
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