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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009699 ID=TCONS_00009699|Name=TCONS_00009699|organism=Clytia hemisphaerica|type=transcript|length=2221bp
CTCCGATTAAGCGAAGGAAAGATTGTAATAGACTTTCTTTAAGCAGGAGA
CTATCCGGCTACCACTCCACCGACCAAGTTTTCCGCGATACATTCgtcaa
attgaatttcaattcgCCACACCATCGCTCATGTGACGACTTACTGACGA
CAACCAAAACGAAAAACGACGATACATCGTCAACGACGACTAAATTTAAC
CGAAGATTACGACGAAAACAGAATCGACGGAGTGACGAGACTATTGATTG
TAATCCGTTATTGAATAATAATTACATGACCAAAGATCCAGCCATGAGTC
CGATAAACCTAATCggaatcaaaacaacaaacgGGCAACATTTTCAAGAA
CCACATTACGAAGCCATTAAAGATCTGTCAATCAAAGCCGCGTTCCGTAT
TAACAGCAATAACTCAACACCCGAAGGTTCCCCGAAGTTATTCCATAACC
GGAAATACGTTTTAAATAACGACGATAAATTGGCGGAAAAAATTAGTCCG
TTGTTGGAGCGGAAGAAGAAATTGAGTGGGAAGGGAGTCAAAAATCCACC
ACTCCCCAAACGTAACACGTCATCTTCTACGCATCATTTAGCAGACGACG
GCGTTACTGAAGTTACGGCAAATCCAATTTATGGGAACACGCTAACGTAC
GTAAACAGTGCTTCAGAACCGTGTTACACTGATGTTACGTTTCATAATAA
GAAAAATTCTGTTACGAACTCTCCGCAATTAACGGTTAAAGTTGATCATC
CGTATTCCGAAATCATTCCTCGCCCGAGACGTTCGGCAACTTCTTCCGAT
AACGATACATCGCCGAATATGTCTCCCGACCGTGTTATGGGCTCGCCCTT
CAGTAGTCGTCGTTCATTCAAACTTACTGCAAATCTCATTGATGGATCAA
AAAGCGATGGTGATCTCTCGGATAGTGATATCCTCGACATTCCTCGGCTC
TACGATCGTCGTCGGAGCCGTACCGGAAATGGAGCCGAGCTTGCAGACCC
ATCTCGTTTTTATGAAACACCCGACCAACAAAAACCTCGTCGTGTTAAAC
AAAACTACCGAGGTAAAACTTACGAAAAAGACTACGTTGAAACGATTATC
AAACCACGACCAAACATAAAAAACTCGGTACAACCGACAACTACCGAATC
AACATACGAAAACAATGTTTGTTTATTAATGAACCAATCAACTTCCTCGG
ATGATGAACCAACGTACGAGAATCCTGATTTACCGAGAATTTTAACATTT
GAAACCGAGGCTCAACCGACTTACGAGAATAATGAACTATTAAACGACGA
AGCGCCGAACGGTTACGCGTGTATTCGGCAAACTTCGGTAAGCACGTCAT
CGGACGCTTCAGACTCTAACTACAATAACATTTGTTTCTCGAGCCGCCAA
GATCAACTACAATACGCCCATATCGATTTACACCCTCAACACCCACTATA
CGATAATCTCACATCGAGTGAACTCGATAAAGATACGGCTAATTCGATTC
ATTCTCGATTGTATTCGGTAACTAAGAACTCGAAATATACTgaaattgac
tttcaaaaatcaGACGGTTTAAAGGAAGCGCTTAACCAGTTGAGAGCTGG
GGAGAGCGCGACAACACCCGAATTAAACGCCGAATACAAAATTGACTTGT
CACATATTAAATTCTCTCGAAGTTCAGAATCGAAacgaaattcaaagaat
ttggaatgaattttttgatactatttatttaacttttgttttgacttttt
tttcacTTGGTTGTGCTTTAGTCTAGATTTATctgtttttgaaatgtttt
cgcaTCTTTTACAATTCTGGATCTTAAATAATAagaatgattttcttttc
ttgaatttattttttgcgggaaaataaaaaacttttgaaaaggccGTCTG
TTATTGTTGGTTGTACAAGAAAatgattttgtattttattgttttaaata
aaattttagaaattattCTTATTGAGAGATTAGATAACGAAGAAACAATT
TTGTTAGttataaaaattttgagaatttgacatttttctaGAAGAAATTT
TATACATAGcttgatttttgtatttttcatacttttttgtGCTTATTTTG
TTTCgtaaatgtattttttattgGCTGGCCATGtagaaaatttatgaaat
tttaaatttcaataaaattatatataaattattttaaatttctatTCGTA
TTTTATTTCACTTTATCTCAG Run BLAST on NCBI protein sequence of TCONS_00009699-protein >TCONS_00009699-protein ID=TCONS_00009699-protein|Name=TCONS_00009699-protein|organism=Clytia hemisphaerica|type=polypeptide|length=568bp
PIKRRKDCNRLSLSRRLSGYHSTDQVFRDTFVKLNFNSPHHRSCDDLLTT
TKTKNDDTSSTTTKFNRRLRRKQNRRSDETIDCNPLLNNNYMTKDPAMSP
INLIGIKTTNGQHFQEPHYEAIKDLSIKAAFRINSNNSTPEGSPKLFHNR
KYVLNNDDKLAEKISPLLERKKKLSGKGVKNPPLPKRNTSSSTHHLADDG
VTEVTANPIYGNTLTYVNSASEPCYTDVTFHNKKNSVTNSPQLTVKVDHP
YSEIIPRPRRSATSSDNDTSPNMSPDRVMGSPFSSRRSFKLTANLIDGSK
SDGDLSDSDILDIPRLYDRRRSRTGNGAELADPSRFYETPDQQKPRRVKQ
NYRGKTYEKDYVETIIKPRPNIKNSVQPTTTESTYENNVCLLMNQSTSSD
DEPTYENPDLPRILTFETEAQPTYENNELLNDEAPNGYACIRQTSVSTSS
DASDSNYNNICFSSRQDQLQYAHIDLHPQHPLYDNLTSSELDKDTANSIH
SRLYSVTKNSKYTEIDFQKSDGLKEALNQLRAGESATTPELNAEYKIDLS
HIKFSRSSESKRNSKNLE Run BLAST on NCBI transcript from alignment at sc0000098:125606..130039+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009699 ID=TCONS_00009699|Name=TCONS_00009699|organism=Clytia hemisphaerica|type=transcript|length=4434bp|location=Sequence derived from alignment at sc0000098:125606..130039+ (Clytia hemisphaerica)
CTCCGATTAAGCGAAGGAAAGATTGTAATAGACTTTCTTTAAGCAGGAGA
CTATCCGGTAAGTaatttgatatttgttttggGAAGTAGTCGAAATGCCG
TCGCCGGAGAATGTCTACCATCTTTATTACAgtgttcaaagtttttcttc
CTCACGCGTGTTTCCGGTCTCAATGAGTCGCAAAAAGTGGTTTTTCCGTT
ACAAAGATCAGTAAAGATTTTAACAATTTCGGCTAGCTGGGAGAAATTTG
CTGTGTAAATCTTAAGTTCCGTCCGACTGAAACGAAAGAGTTTGCTTTGA
CATATGTTTGACGTTTGATTTTCTAGTATTGTGTCTTTTACTCGTTCTCT
CAATGTCAAACTGGAAacttttcgataatttttaaaaCGCTCAACATTTT
ACGTTTGTATTTACCAGCTGGGCACTCTTTTTTATGTTGACTTCATTTGA
TAGATTTTTTAAGGTTCTATGCTCGAGATTAAATCTATGTCATTCCCTTT
CAAGCCCGTTTGGTGCTGAAAAGATTATATTCTTTGTAAACACTTCCTAA
TCAATTGGGCATGCTCGAACTCGAATACTGCTTCTTTAATCTGTATTGCC
AGCAATGTATTGGCCGAAGCCGTAATCGAACGGTGTTTTGTCTGTTATAC
ATTTTATGGCTTGccaataataaatatttttgccaACTCTTTGTCTTCAA
ACGGGGCTTCATACTTTACGCCGGAAAACTGAGACGTAGAAACGGGACCT
AACGCCCAATGAGTTTGAATATTCATGACTATACAAATTATTATGTGAGT
TTGGTAGAAAGGGGTAAACTTAAACTGTACTTAAAATCTTTATTCACCAT
TTTATTTCTGGTCCCCCTTTATCTTTAAAACCTTTGACTCGACGCTTTTT
AGCAtattgattttttcacagaGGTCTTTGAAGGGATGAAAAGACGAGAA
AAGCTCAGAGTCCAAATTCCAAAACTTAGGTATTTTTACGTGCTCTTAAC
TGATAATTGTCTTTTTTGATAAGCTTTGTGATTCACAcgagtttccatgg
caacgtgTGACCGTTATTCCCCTATTTTAATCAAAATACcctttttttaa
tgactttATCATGTCCCCACGTAATAGATTTATGCTTAtcttaactttct
ttttgaTTCGGAGGGTACAAACACACACGAACAATCTAAATATTAATTCA
TTCACTCGTTCGGTTTTTTAATACCACTTCATTAATCTTAAACCTAGtcc
taaacgtttttttataagaacgttcaAGATATTTCTAAAACCTTCGTATG
TTCTCTAATGTTTGAGTTTTAGGTAAAAAATGTGCTcttaaaattcacaa
ttttggtgagaatttttttgcaattttctaaAGAATTCCGTGTTTTAGAG
TCCTGGATGCCTTGGAATGTTTATTAACTTGAAACAAGTATTATTATAAA
TCTAATCACTTAtatattttgtaagaacattttgatCTAAAAATAGTAGG
ACGAATAGTAGAGCGTTGGATTAGGGGagcaaagaattttttttcaaaaa
agcattTGTAATGGGgactttttcaataaaaatttggtctctttaagggt
cggttttcggttTTCATCTGCCAaccctaccccccccccccgggatagaG
TGTCAACTGAACCTGGTCTTATAGAAAATGCACGGGCATGTTTTAGATTG
TTTAATGAACTCGGACCTTAGGTTAAATTTGAAGTCTCTCTTATACGTTT
TAATACATATCTTGTTGTCAATGATAAAAGGATTCTtgaaaattcagtga
aaaatgacTGAACTTAACGTTCTTAATGGATctttatcggagtttttgat
ttttctaaaaaggcgATGCATTGTGGGGTTGTTTcaggagtattacaata
gaaatctcttaggaattcctcatccgaaacaatcccacaatgcatcactt
tttagaaaaatcaaaaactcagtAACGTAGTCTTATAAGAAATACACGGG
CATGTTTTAAATTGATTAATAGACGCGGACCTACCCTTCATTCAAAAAAG
CAAACGTTTTTTTAATTGACGTCAAGAGAGGTTTAATGACACCAGCATTC
ATTAATTAAGAGATGCTTCTCATTATCTCAACTATTGTATAAAATGAACT
AATGTTCTCATTAACAGACAACAAGAAATTTATTTCTGATTAAGCTGTTG
AGCTGTTAAGACGTGTTCCTTTTaaagatttgaatattttgtCAACGCAA
CGCTTTCTTCATGGTTTTAGGCTACCACTCCACCGACCAAGTTTTCCGCG
ATACATTCgtcaaattgaatttcaattcgCCACACCATCGCTCATGTGAC
GACTTACTGACGACAACCAAAACGAAAAACGACGATACATCGTCAACGAC
GACTAAATTTAACCGAAGATTACGACGAAAACAGAATCGACGGAGTGACG
AGACTATTGATTGTAATCCGTTATTGAATAATAATTACATGACCAAAGAT
CCAGCCATGAGTCCGATAAACCTAATCggaatcaaaacaacaaacgGGCA
ACATTTTCAAGAACCACATTACGAAGCCATTAAAGATCTGTCAATCAAAG
CCGCGTTCCGTATTAACAGCAATAACTCAACACCCGAAGGTTCCCCGAAG
TTATTCCATAACCGGAAATACGTTTTAAATAACGACGATAAATTGGCGGA
AAAAATTAGTCCGTTGTTGGAGCGGAAGAAGAAATTGAGTGGGAAGGGAG
TCAAAAATCCACCACTCCCCAAACGTAACACGTCATCTTCTACGCATCAT
TTAGCAGACGACGGCGTTACTGAAGTTACGGCAAATCCAATTTATGGGAA
CACGCTAACGTACGTAAACAGTGCTTCAGAACCGTGTTACACTGATGTTA
CGTTTCATAATAAGAAAAATTCTGTTACGAACTCTCCGCAATTAACGGTT
AAAGTTGATCATCCGTATTCCGAAATCATTCCTCGCCCGAGACGTTCGGC
AACTTCTTCCGATAACGATACATCGCCGAATATGTCTCCCGACCGTGTTA
TGGGCTCGCCCTTCAGTAGTCGTCGTTCATTCAAACTTACTGCAAATCTC
ATTGATGGATCAAAAAGCGATGGTGATCTCTCGGATAGTGATATCCTCGA
CATTCCTCGGCTCTACGATCGTCGTCGGAGCCGTACCGGAAATGGAGCCG
AGCTTGCAGACCCATCTCGTTTTTATGAAACACCCGACCAACAAAAACCT
CGTCGTGTTAAACAAAACTACCGAGGTAAAACTTACGAAAAAGACTACGT
TGAAACGATTATCAAACCACGACCAAACATAAAAAACTCGGTACAACCGA
CAACTACCGAATCAACATACGAAAACAATGTTTGTTTATTAATGAACCAA
TCAACTTCCTCGGATGATGAACCAACGTACGAGAATCCTGATTTACCGAG
AATTTTAACATTTGAAACCGAGGCTCAACCGACTTACGAGAATAATGAAC
TATTAAACGACGAAGCGCCGAACGGTTACGCGTGTATTCGGCAAACTTCG
GTAAGCACGTCATCGGACGCTTCAGACTCTAACTACAATAACATTTGTTT
CTCGAGCCGCCAAGATCAACTACAATACGCCCATATCGATTTACACCCTC
AACACCCACTATACGATAATCTCACATCGAGTGAACTCGATAAAGATACG
GCTAATTCGATTCATTCTCGATTGTATTCGGTAACTAAGAACTCGAAATA
TACTgaaattgactttcaaaaatcaGACGGTTTAAAGGAAGCGCTTAACC
AGTTGAGAGCTGGGGAGAGCGCGACAACACCCGAATTAAACGCCGAATAC
AAAATTGACTTGTCACATATTAAATTCTCTCGAAGTTCAGAATCGAAacg
aaattcaaagaatttggaatgaattttttgatactatttatttaactttt
gttttgacttttttttcacTTGGTTGTGCTTTAGTCTAGATTTATctgtt
tttgaaatgttttcgcaTCTTTTACAATTCTGGATCTTAAATAATAagaa
tgattttcttttcttgaatttattttttgcgggaaaataaaaaacttttg
aaaaggccGTCTGTTATTGTTGGTTGTACAAGAAAatgattttgtatttt
attgttttaaataaaattttagaaattattCTTATTGAGAGATTAGATAA
CGAAGAAACAATTTTGTTAGttataaaaattttgagaatttgacattttt
ctaGAAGAAATTTTATACATAGcttgatttttgtatttttcatacttttt
tgtGCTTATTTTGTTTCgtaaatgtattttttattgGCTGGCCATGtaga
aaatttatgaaattttaaatttcaataaaattatatataaattattttaa
atttctatTCGTATTTTATTTCACTTTATCTCAG Coding sequence (CDS) from alignment at sc0000098:125606..130039+ >TCONS_00009699 ID=TCONS_00009699|Name=TCONS_00009699|organism=Clytia hemisphaerica|type=CDS|length=3414bp|location=Sequence derived from alignment at sc0000098:125606..130039+ (Clytia hemisphaerica)
CCGATTAAGCGAAGGAAAGATTGTAATAGACTTTCTTTAAGCAGGAGACT
ATCCGGCTACCACTCCACCGACCAAGTTTTCCGCGATACATTCgtcaaat
tgaatttcaattcgCCACACCATCGCTCATGTGACGACTTACTGACGACA
ACCAAAACGAAAAACGACGATACATCGTCAACGACGACTAAATTTAACCG
AAGATTACGACGAAAACAGAATCGACGGAGTGACGAGACTATTGATTGTA
ATCCGTTATTGAATAATAATTACATGACCAAAGATCCAGCCATGAGTCCG
ATAAACCTAATCggaatcaaaacaacaaacgGGCAACATTTTCAAGAACC
ACATTACGAAGCCATTAAAGATCTGTCAATCAAAGCCGCGTTCCGTATTA
ACAGCAATAACTCAACACCCGAAGGTTCCCCGAAGTTATTCCATAACCGG
AAATACGTTTTAAATAACGACGATAAATTGGCGGAAAAAATTAGTCCGTT
GTTGGAGCGGAAGAAGAAATTGAGTGGGAAGGGAGTCAAAAATCCACCAC
TCCCCAAACGTAACACGTCATCTTCTACGCATCATTTAGCAGACGACGGC
GTTACTGAAGTTACGGCAAATCCAATTTATGGGAACACGCTAACGTACGT
AAACAGTGCTTCAGAACCGTGTTACACTGATGTTACGTTTCATAATAAGA
AAAATTCTGTTACGAACTCTCCGCAATTAACGGTTAAAGTTGATCATCCG
TATTCCGAAATCATTCCTCGCCCGAGACGTTCGGCAACTTCTTCCGATAA
CGATACATCGCCGAATATGTCTCCCGACCGTGTTATGGGCTCGCCCTTCA
GTAGTCGTCGTTCATTCAAACTTACTGCAAATCTCATTGATGGATCAAAA
AGCGATGGTGATCTCTCGGATAGTGATATCCTCGACATTCCTCGGCTCTA
CGATCGTCGTCGGAGCCGTACCGGAAATGGAGCCGAGCTTGCAGACCCAT
CTCGTTTTTATGAAACACCCGACCAACAAAAACCTCGTCGTGTTAAACAA
AACTACCGAGGTAAAACTTACGAAAAAGACTACGTTGAAACGATTATCAA
ACCACGACCAAACATAAAAAACTCGGTACAACCGACAACTACCGAATCAA
CATACGAAAACAATGTTTGTTTATTAATGAACCAATCAACTTCCTCGGAT
GATGAACCAACGTACGAGAATCCTGATTTACCGAGAATTTTAACATTTGA
AACCGAGGCTCAACCGACTTACGAGAATAATGAACTATTAAACGACGAAG
CGCCGAACGGTTACGCGTGTATTCGGCAAACTTCGGTAAGCACGTCATCG
GACGCTTCAGACTCTAACTACAATAACATTTGTTTCTCGAGCCGCCAAGA
TCAACTACAATACGCCCATATCGATTTACACCCTCAACACCCACTATACG
ATAATCTCACATCGAGTGAACTCGATAAAGATACGGCTAATTCGATTCAT
TCTCGATTGTATTCGGTAACTAAGAACTCGAAATATACTgaaattgactt
tcaaaaatcaGACGGTTTAAAGGAAGCGCTTAACCAGTTGAGAGCTGGGG
AGAGCGCGACAACACCCGAATTAAACGCCGAATACAAAATTGACTTGTCA
CATATTAAATTCTCTCGAAGTTCAGAATCGAAacgaaattcaaagaattt
ggaatgaCCGATTAAGCGAAGGAAAGATTGTAATAGACTTTCTTTAAGCA
GGAGACTATCCGGCTACCACTCCACCGACCAAGTTTTCCGCGATACATTC
gtcaaattgaatttcaattcgCCACACCATCGCTCATGTGACGACTTACT
GACGACAACCAAAACGAAAAACGACGATACATCGTCAACGACGACTAAAT
TTAACCGAAGATTACGACGAAAACAGAATCGACGGAGTGACGAGACTATT
GATTGTAATCCGTTATTGAATAATAATTACATGACCAAAGATCCAGCCAT
GAGTCCGATAAACCTAATCggaatcaaaacaacaaacgGGCAACATTTTC
AAGAACCACATTACGAAGCCATTAAAGATCTGTCAATCAAAGCCGCGTTC
CGTATTAACAGCAATAACTCAACACCCGAAGGTTCCCCGAAGTTATTCCA
TAACCGGAAATACGTTTTAAATAACGACGATAAATTGGCGGAAAAAATTA
GTCCGTTGTTGGAGCGGAAGAAGAAATTGAGTGGGAAGGGAGTCAAAAAT
CCACCACTCCCCAAACGTAACACGTCATCTTCTACGCATCATTTAGCAGA
CGACGGCGTTACTGAAGTTACGGCAAATCCAATTTATGGGAACACGCTAA
CGTACGTAAACAGTGCTTCAGAACCGTGTTACACTGATGTTACGTTTCAT
AATAAGAAAAATTCTGTTACGAACTCTCCGCAATTAACGGTTAAAGTTGA
TCATCCGTATTCCGAAATCATTCCTCGCCCGAGACGTTCGGCAACTTCTT
CCGATAACGATACATCGCCGAATATGTCTCCCGACCGTGTTATGGGCTCG
CCCTTCAGTAGTCGTCGTTCATTCAAACTTACTGCAAATCTCATTGATGG
ATCAAAAAGCGATGGTGATCTCTCGGATAGTGATATCCTCGACATTCCTC
GGCTCTACGATCGTCGTCGGAGCCGTACCGGAAATGGAGCCGAGCTTGCA
GACCCATCTCGTTTTTATGAAACACCCGACCAACAAAAACCTCGTCGTGT
TAAACAAAACTACCGAGGTAAAACTTACGAAAAAGACTACGTTGAAACGA
TTATCAAACCACGACCAAACATAAAAAACTCGGTACAACCGACAACTACC
GAATCAACATACGAAAACAATGTTTGTTTATTAATGAACCAATCAACTTC
CTCGGATGATGAACCAACGTACGAGAATCCTGATTTACCGAGAATTTTAA
CATTTGAAACCGAGGCTCAACCGACTTACGAGAATAATGAACTATTAAAC
GACGAAGCGCCGAACGGTTACGCGTGTATTCGGCAAACTTCGGTAAGCAC
GTCATCGGACGCTTCAGACTCTAACTACAATAACATTTGTTTCTCGAGCC
GCCAAGATCAACTACAATACGCCCATATCGATTTACACCCTCAACACCCA
CTATACGATAATCTCACATCGAGTGAACTCGATAAAGATACGGCTAATTC
GATTCATTCTCGATTGTATTCGGTAACTAAGAACTCGAAATATACTgaaa
ttgactttcaaaaatcaGACGGTTTAAAGGAAGCGCTTAACCAGTTGAGA
GCTGGGGAGAGCGCGACAACACCCGAATTAAACGCCGAATACAAAATTGA
CTTGTCACATATTAAATTCTCTCGAAGTTCAGAATCGAAacgaaattcaa
agaatttggaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009699-exon-sc0000098-1491911889:125606..125662 | TCONS_00009699-exon-sc0000098-1491911889:125606..125662 | Clytia hemisphaerica | exon |
| TCONS_00009699-exon-sc0000098-1510915933:125606..125662 | TCONS_00009699-exon-sc0000098-1510915933:125606..125662 | Clytia hemisphaerica | exon |
| TCONS_00009699-exon-sc0000098-1575043694:125606..125662 | TCONS_00009699-exon-sc0000098-1575043694:125606..125662 | Clytia hemisphaerica | exon |
| TCONS_00009699-exon-sc0000098-1491911889:127876..130039 | TCONS_00009699-exon-sc0000098-1491911889:127876..130039 | Clytia hemisphaerica | exon |
| TCONS_00009699-exon-sc0000098-1510915933:127876..130039 | TCONS_00009699-exon-sc0000098-1510915933:127876..130039 | Clytia hemisphaerica | exon |
| TCONS_00009699-exon-sc0000098-1575043694:127876..130039 | TCONS_00009699-exon-sc0000098-1575043694:127876..130039 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000098 | supercontig | sc0000098:125606..130039 + |
Blast
The following BLAST results are available for this feature:
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