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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009697 ID=TCONS_00009697|Name=TCONS_00009697|organism=Clytia hemisphaerica|type=transcript|length=681bp aaaaaatgttaattgattgactttactCTACTCTTTAAACTGTGTTTGAT ATACAAACCAGTATATTGATTGATTCCTTTagattatttttgtatttgtt aAGTTGAAGGCATTTTAGCAATCTAAGGAAAGCTCAGGGTTATCAAGTCA AGCTATTGCTAATGATTTTATTGCAAATACTTTGAGATGAGttgagaaat tttattgaaattgatGCAGTTCAAATAAACACCTTTTGAACGGAAAATTA GAAGCTATCATTGCACAATTACTGCTGAAACTGAAATCATCTCTCTTTAG CCTGAGTATTTTAACACGATAGCAAATTTTGAAGTACCAGTTTAGCTGAT TAGCTGTAGaagagtttgttttgattattctgGTGTTGGAtttgattttg tcaaaatgttcCTGTATACCAAAGCAATTCGCGATCACCTTCTACAGAAA ACGAACAATGGAGTCTCCAAATCTTCAACATCATCCAGTCTAGCTGACGA TGATTCTGAAGGCACAGAGGCTCACCAAggtaatttttatttatgtcATC TCGaaagtactttaatgggataaactttcgcggggattaaatttcgcgga tttcgcagatttgggtgtcatccgcgaaattaagtcccaatggaaatttg gaagggcctcacccgcgaaatatttctaaac Run BLAST on NCBI transcript from alignment at sc0000098:105409..115890+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009697 ID=TCONS_00009697|Name=TCONS_00009697|organism=Clytia hemisphaerica|type=transcript|length=10482bp|location=Sequence derived from alignment at sc0000098:105409..115890+ (Clytia hemisphaerica) aaaaaatgttaattgattgactttactCTACTCTTTAAACTGTGTTTGAT
ATACAAACCAGTATATTGATTGATTCCTTTagattatttttgtatttgtt
aAGTTGAAGGCATTTTAGCAATCTAAGGAAAGCTCAGGGTTATCAAGTCA
AGCTATTGCTAATGATTTTATTGCAAATACTTTGAGATGAGttgagaaat
tttattgaaattgatGCAGTTCAAATAAACACCTTTTGAACGGAAAATTA
GAAGCTATCATTGCACAATTACTGCTGAAACTGAAATCATCTCTCTTTAG
CCTGAGTATTTTAACACGATAGCAAATTTTGAAGTACCAGTTTAGCTGAT
TAGCTGTAGaagagtttgttttgattattctgGTGTTGGAtttgattttg
tcaaaatgttcCTGTATACCAAAGGTAATTCTACTTCGTTCAAGTCCATA
GTAACCATAGCAACCATAGGTGTACCCATAGTAACCATAGGTGTACCCAT
AGCAACCATAGGTGTACCCATAGTAACCATAGGTGTACCCATAGTAACCA
TAGGTGTACTTTTGAAAAGTCTATTGACTTCATTTTGAGATAAATGTATT
CTTGGTTTATACTTACTTCTCGAAAAGGTGTAAAAATTGAGAGAATATTT
ACCCAAATTTAGctcaaatttagatttaaaagGTATggctgaatttattt
ttaattgcgAATGGACTTCGCATTTTCTGCAATTTTTAAATGCATAATAT
TTAATGACCTGTTTTTCAATCCTGGGTTTTCAGGCTATTCAAAGTGAAAC
TCATacacatttttcataagaacaaactatataagaacataatgcttcga
tgtacaaaatattaagaacaagttagaaaggctttgcggactctaaaaca
ccttaTAAACTATAGAGGTCTTGCAATCACTTTTGATTACATATCAACAT
GTTTTTCAAGGGCTTCAAATAAATGGCAGCCTGTCAAATCGCATCATTTT
TGTCTGAAAGAATACACGAGTGTTCTGAAAGGTCTTTCTTTTTGAGTAGG
CAATCACTTTCCACTTAAGATTGGGTTACAAGCAAGTGAAATGATACAAC
AAGCTTAGCTTTATGACCAAGTTTTTCTGTATAATCTATGTACGAATTAT
CTATATTTAAAACCTTTGATGAAAGATCCAGCCCTATGTCCACGTAGGAT
CTATTATGACTTGATGGCGCAATTAAGTGGCATAGGGTAGATTAATATTG
CGATATGTCAGCCATCTTCTTTTTTTGCTTTGCCTTAGTAGAACGTAAAC
AGTCCGTCAGATTCTAGTTGTGTTTGGAAAACGATAAAAATGGACCGGGC
AATGGAGAAATTCAACCAGATATAACCGGAAGCTAGATTCGAATCTCCCA
TGTAGGGAGTTGCGCGGCACGCGGTTTTTCATACAAACACTAGATTGAAA
GTAACATTTACCGCTAAAATTTGAAacgcaaaaacaaaaaaaagtgttAG
ATTCAATCCATCATGCGGTGGAAATTTAtggctttactttttcttgcctt
CGGCTTCAAACTTGCTCAATATTTGAGATTTGAGTTTCTTTAACAACAGA
TTCTTTACATCCCGCCCTTTTTGGTGATGGTACCCCCCTGTCATTCGTCC
CCAGGACTATGAGTGTTTCATTACCATCTTGATAAGGAGTAATCATAGAC
AATCGTTCACTATCTCtctgtttttgagttttaatgatgataaaaccCTC
TTTTGGATTACAcgcttatttttataagaatggtgtaaattcatttcatc
atggatattcttaacttttttgggaaaattatcttaaaatattctcatag
cattcttaggttaggatcctaattcagactagatttaacttttagtacat
acgtctcaaaattccatgatggtgatattcttagcttattcttaattttt
gaccattttcttcatggacattcttataaagtgtattcttataaaagaaa
agcgTGTACGTGATTTCTTATCATGGTATGATGATCAAATACAttctatt
tataagaatcaggaAATTTCCAGTTATTCCTGATTTTCGTGATTCTCAAg
ttaaatgttcttaagatgatATTGGATCCAAGATATCTATTGGGAAAATA
TAGCAGCTTTGTTCTCGTTATATTAATTCTTCGTTCGAGATCCGAGATGT
CCTTCTGTTATTACAGTTTTGTTAATTTAACGGTTGTTCGTTCTTTTTGT
TCTTAGATTCtcatcttaaaatgttcttatttaaagTGTGTATAGCGAAA
ACTTAGTTTGCTAGTTAAAAAAAACGGCATAAAAGACCGTCTAATGTTTG
TTTGTCGATGATGCTGACGACCGACTGACGTTgatttaatcttttttcca
gCGACATTTAGGAATGACGTCGTTGTGTTTACTTAGAGTAATTTTATTTG
AATGATCACTTTTAATcgactttttttacttttacctCCTTTTACTTTCT
ATAAATCGCGTCActactagactagtaaactagtcgttgaaaacagaccc
attatacaaaaaatcaagctccaaatagaagttgcgtctcttttctgaat
ttcaacgacgttgtttaattttacaactttttttaggtttttgagaatcc
atccaacttttttgactaaataatatttcatagtaacattgaacatggga
acatataaataaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNctctcacgcgcgctgaatatttaatta
gtgtttacattatttgattgacagttttattataaggttataagtaataa
ccgactagtttactagtctacgtCACTACTAGCCTTGATATCCAGACTGT
AAACTTATTCGACCTTTGATGTTTTTTAGGATTTCTATTCTCATATCAGA
AGACAGTGCGTGCGTACTTTGCCAATTTCAATATTGTGGGAAGCTAAAAA
TTTGACGACCCAGGGTTTACAAGCATCTACAATCAGCGTCGAAATGTTTG
GCACagaaaggggaattccctcaaaactttaaaactgaTTCTTAGGTGCT
TTGAAGTAcggtttgaaatttgaaagtagagttttaactctgagttttaa
cagaGACTTAAGActaatgttccaataaggcttgaaatatagcctggaag
tcactTAACCCcttcccaaatcgaaaaatccaatgaaacaaagtagaatt
gaaactgcaattctcgcccgagctttagattctgaaaaaaacgttaaaat
acccaaaattataccaatatatttcggcgctgattgtagGTAAACCAAGC
CATTGAGCAGAAACATCAAAATAGAGAAATGATTTACAGCTTGGATATCC
ATGCTGCACCATCTACATTTTCTTGCTATCTTGAACCGACACGTTGCCTG
AgcttatttcccatctaaatGCATGCCTCGCATGGCTTAAAAGCACAGAG
TGGAGTCACCGTAATTTAAACATCTTTTACTCAATCAAATGTCTTCTaaa
ttcgaacaagttttcttgtccCTGCATTTAACAATACCTTTTATGAACCT
TTAACctaaaatttccttaactcgaacaaatctgcgagcgtgttcgagtt
atggagagtcCACTATAGCTCGCTTAGCTTAATTTGCTTTTTTTGCTCTC
TATAATATAACGTTCACCCTAAAATCATTCAATGAGTCACAGATAGAAAG
CCTAATAAGAATGAAAGACTTGTGATTTTTTGGTCAACTCAAGGGGTTaa
taaaaaatacttttgatatattCTTGAGAAATTTACCGCAAAAGCCAAAA
ATGAACTCATCGCAACTTGAAGACATCAAAGATGGAGTGCAAAAAATCCT
CATAAGGGAGAAGGGGTCAAATTTCTTGGGTTTTCTCCTTGGAGGGAGTN
gttttaactctgagttttaacagaGACTTAAGActaatgttccaataagg
cttgaaatatagcctggaagtcactTAACCCcttcccaaatcgaaaaatc
caatgaaacaaagtagaattgaaactgcaattctcgcccgagctttagat
tctgaaaaaaacgttaaaatacccaaaattataccaatatatttcggcgc
tgattgtagGTAAACCAAGCCATTGAGCAGAAACATCAAAATAGAGAAAT
GATTTACAGCTTGGATATCCATGCTGCACCATCTACATTTTCTTGCTATC
TTGAACCGACACGTTGCCTGAgcttatttcccatctaaatGCATGCCTCG
CATGGCTTAAAAGCACAGAGTGGAGTCACCGTAATTTAAACATCTTTTAC
TCAATCAAATGTCTTCTaaattcgaacaagttttcttgtccCTGCATTTA
ACAATACCTTTTATGAACCTTTAACctaaaatttccttaactcgaacaaa
tctgcgagcgtgttcgagttatggagagtcCACTATAGCTCGCTTAGCTT
AATTTGCTTTTTTTGCTCTCTATAATATAACGTTCACCCTAAAATCATTC
AATGAGTCACAGATAGAAAGCCTAATAACAATGAAAGACTTGTGATTTTT
TGGTCAACTCAAGGGGTTaataaaaaatacttttgatatattCTTGAGAA
ATTTACCGCAAAAGCCAAAAATGAACTCATCGCAACTTGAAGACATCAAA
GATGGAGTGCAAAAAATCCTCATAAGGGAGAAGGGGTCAAATTTCTTGGG
TTTTCTCCTTGGAGGGAGGTGAGAAAATTGATCGGTGATTCATTCAAAAA
TATGTGGGCGAACTTTCAAAGCATTTAAAAttggaaaatctaaaaaaaca
gTATCATTGGTTTTGCGAAATGCGATTAAGGGCTTATTTTTGATGAgttt
ttttactacttttttaAATGCTATTTTCTTAACATATCGTTGAGGGAATT
GTGATTTTATTACTTCGCATTTTGTGATACCTTCATGTATGTAAATGACA
GTCGTTAAAGTTTATACTGCTGTTTTattaatgttttgtttattattgtt
ttgatgatGTATCTTTTTCCTCGTTGGAAGTGTCATGTATTTTGTATTAC
TTGGTGAAAAATTGATTGTTgatgaaaattgtatcatgtTTGGTGTAGAC
ATGGGTTCAACTGAAGAGTGGAAGAAAAATTGCGATTGTATCGATCAAAA
TAACTCGATTATATCGAATCAATATCGAAAAGATCGAAGATTGTCATTAT
TGTTTCGATTAAAGTATGTCCAACAGTTGAGAAAATGTGCTgtaaaaatg
tttaaagttaATGGTTAGTGTCTCATTTTTTgtgatacacccctgtctca
cagccccggtgaaacccctgtctcacagccccggtggaacaaAAAATTTC
TACCATATCCAAATGATGggagatagaaattctattgtttcaagttAAAA
AACCTAGTGGGTATGATTTTGGAGTGCATTTTTCccattgaatttcgaat
aggGGTGAGATCAGATTTGATTCCCCTGTGAGGTTGAAATTAGAGgttat
ttttcccaccggggactaAATTTTAGGTAAAGTTTCCAGTCGGGCTGgcg
tcccagcgggtctgtgacataccgtaagttggtctaagtCGACATCCCTC
CACTAATtgcgacaccctttttatcagctgaaattgatagaaaggtttga
aactgtttttcttggcttactggtcacagaggaataatcctttttcaatc
agtgattcaaactttcattttattcctgtctctaaagaagggtgtcggaa
ttagacgaggggtgtcgatattagaccaagttacggtacaggtgtgttat
aatttttttttgcctgttCAAACCTGAGTATGGAAAATCTATTTTGTACT
TACGGCTTACTATCCAAAATTTAGTCTGGATATTCATGCTGTTAGCCTGG
ATATTCAAGCTTTAAATTTCAGAAAACTAAAATTCTAATCCAGGCTATGC
AAAAGTCCGCTCGACAATCAAAGGCTTTTCTGAGCACTGATTGGTTTATT
ATTTGGCTCGATTACATCATAAttttgagtttcaaccaatcagattgatt
tgattgtttaGCGGGTAATCGGATAGTTCGGGATAGTTAGCCTTAAGTgt
aatattttggcctttattCACTTCAGTCCTCATAGCTTAGACGACTATGT
TTCCAGTTTCCAGGGAAGATCATTTTAGTATTCGAGTTATAGGGTGCAAA
AAGTGTTTCGtcaaatttttcttcagaaaaaagactttttaaagATAACC
TAAGATAACCTAATAATTCGATTTTTCAAAGATGATCCAATTTCAAATAC
CTGAAAATGTAAGATTTGTCACCACTATTGTAATGGTGACTCATTGTGTC
ACAAGACACACGCAACAATCAAAGTGTACTGTAAATCCCTATCTTcagaa
aattcaaagaaatccaaaaattgatgaatatccagctggcacacaacgtt
ggttcaacgttcatctaacgttatatggacgttatgaacattagataaac
gttaaaacaacatgATAAGTATCAATCAGGTGTGCCGGTCGAAACACAGA
TAATCTGCAGTGGATTTAAGTATATTATCCTGTCAGAAATAAAATGTGGT
TTTCCCCCTAATTTcatgctgacgtcatcgaaaatcTCTAATAAGAAATG
AGACTCACTTCTATCGAAAGTCTCTAAATAAACTTTTTACAACACCGTTA
AGTACGGTTTTATAACGACATCATGccgtcaaaaaaataaaattgacgtg
CGACGCTCAGCTGTAAAAACCGACTGTTTACTTTTCCTTTGCTATAGAAA
CGACGAATATTGTTACCTAGGAGATAATAAACTAATCAAATGAGATTTTA
TTGTTCGAGTTTTATTAATGACCTCATAAAACAATAGTTCTGTAATTAAT
TCTAACCTCAATTGATTGATATTCAATAAAATGCAAATTTACTACCATTT
CTCAATGATTACGACTataatatacacgtttttttataagaacgtccaat
ttttttgaaaccttcggatgttcttaactttatgAGTTTtcagtctaaaa
atgttcttagcatattcttattttGACTGCTTTCTGTGTATTTTTGTCCA
TCTTACTAAAGAAATCtatctgcaaagccttaaaatgttcttaacttgtt
cttaatattttggtcatagaagccttatgttcttataaaaatacgtATAC
AAATTAAACACTATTTCTCAATAATTACGATCGTGATATATTGCTCTGCT
TTAAGTTCCTTGTGCGCTTACTTCATTTTGCAATATCGCATATTTAGATC
TTAATTAAACTGAATTATTTGATAATTACTTACACCCATTCAATATATCA
CATTTTTCTAGAGAACATGTCAAGTAAAAAAACTACCTATCGCAATGTAT
TACACTATAGCCCTTGTGTTTATTAATTGTTTTTTGGTTGGGTTTTCTGG
ACATTACATTTTAGTCATGTGATGAAAAATTCTAGTCTTTGAGAGTCAAA
TAAGTAAAATATATATTCTCCGGGGTGTCCGGGGGCCGAAGACGTCATTT
TTGGTATAATTACCAAAAAATGACGTCTTCGAAAGCTCACTAACCTCCAG
TTAATTTGGAACCCTTTACTTATTCTGTCTTAAAAAAAAGGTATAGTTGA
TTCAAATTGATTGCACAGTGTTTCGAGAGAGCACTCGACCCAGCACAACA
TGTGCCTTTCGAAATATTTccattttaaattctaaaagaTTAATTATGTA
CCCTAATCCGCTATTTCCATACCTTTCAGATTTTCACAAGACTTGATCCT
GAAGActtatactctcgggtacctaatNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNccccccccccccccggctattaggtacccgagagtaccacATTT
TATCTCTAattgcacgttttttttataataacatccaaatttctgaagcc
ttcgaatgttcttaatttttccagtcttaagcctgaaaatgctcttaaaa
ttttaattttgtgagtattttttttgtcatttcctAAGGAATtaagtgtt
ttagagtctttgaaacctgaaattatttttaacttgttcttaatatttca
gcCATCAAAaacttatattcttatatagtttgttctcgtTAAAGAATACg
tgtaattttttcaaattcgtaCGATCTCTGCAGCGGATTCCGAACGTCAG
AACTTTGCACGGGTGAACGAAAATACGTCACCATACCTATCAATAGGAAA
TTCTCTGAATGTGTAGACCAGCAGGGATGTCGTAGGCTTTGATCACATAC
ATATATAtaacaagaaaaacaaatagAGATTTTAACCAATTGAAAGATCG
TTTTGAGTCAAGAGTGTCAggatcaaaaaattgattttcgaAGGATTttg
tggtgttttttttttatcatgGAAGTTGAAACTTGTGACTGTTCGGCAAC
GGCTAAACATTTAGCCCGGAAACTTTTAGGTAATCTTTTCAAAACTCATT
TTCAATGTTTGGAAATGTTTTTCCGGATCAAAATCGAGTAATATCTTTTT
TTCAGTactcaaaaaatgttgttttttgctATTTCCCCGATAGCTTGATA
GTAATTTTGGGTTATATCATAGTAGTTAAACTTTATAATTTAGGGAAGAC
CCACTTccgaatatctttccaacgtcTGCAATATCCAGCTGTcgaaaagt
gataaaaaatttttttgaaggttTCAGAAAATTTGCTTTAAAGTAGAATA
TGAGAAATTTCGTCATTAAATTGAATACATTTGGTACATTTTGAGTTATC
AAGATGTTTTGGTTTTCCACAAAGATTAGAGTTTGTCCTAACATGTAATT
AAAATGCTCATTAATGACCCATTAATGATCCAGTGACTCAATGATAAATT
AATCTAATTTATCCTATAGTCCTTACACCAAAGtttcatattttttgaaa
atcactttTGAATTTGATCAAAAATTTTATGATATTTAAGTACagcggag
tctccataactcgaacacgcacagggaacacaaatttgttcgagttaaag
aaatatCGAGTTACAGAGATTGGTTTATAAGGTACCGTCAACTAAAATGA
GAAACAAGAATCCTTGTTTGAGTTGAGGAGACATTCGATTTATAAAGGAT
CATGGTAAAGTGGCTCCATtgtattagcgaggttaagcaagtgtttattt
taatcgtaaagtgcgataccgaAGGCCTGTACAttgccaaagcaaaccat
gcaagtgaaatcttatgtacagacctacgatatcgcattgaacggtctaa
ataaacacttgcttaacctcgctctATTATAACCAGAAAGATTTTGTTCT
AAGAATTCTCTTTTTTTCACTTCAGCAATTCGCGATCACCTTCTACAGAA
AACGAACAATGGAGTCTCCAAATCTTCAACATCATCCAGTCTAGCTGACG
ATGATTCTGAAGGCACAGAGGCTCACCAAggtaatttttatttatgtcAT
CTCGaaagtactttaatgggataaactttcgcggggattaaatttcgcgg
atttcgcagatttgggtgtcatccgcgaaattaagtcccaatggaaattt
ggaagggcctcacccgcgaaatatttctaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00009697-exon-sc0000098-1491911889:105409..105832 | TCONS_00009697-exon-sc0000098-1491911889:105409..105832 | Clytia hemisphaerica | exon |
TCONS_00009697-exon-sc0000098-1510915933:105409..105832 | TCONS_00009697-exon-sc0000098-1510915933:105409..105832 | Clytia hemisphaerica | exon |
TCONS_00009697-exon-sc0000098-1575043694:105409..105832 | TCONS_00009697-exon-sc0000098-1575043694:105409..105832 | Clytia hemisphaerica | exon |
TCONS_00009697-exon-sc0000098-1491911889:115634..115890 | TCONS_00009697-exon-sc0000098-1491911889:115634..115890 | Clytia hemisphaerica | exon |
TCONS_00009697-exon-sc0000098-1510915933:115634..115890 | TCONS_00009697-exon-sc0000098-1510915933:115634..115890 | Clytia hemisphaerica | exon |
TCONS_00009697-exon-sc0000098-1575043694:115634..115890 | TCONS_00009697-exon-sc0000098-1575043694:115634..115890 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000098 | supercontig | sc0000098:105409..115890 + |
Blast
The following BLAST results are available for this feature:
|