TCONS_00009683 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009683
Unique NameTCONS_00009683
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2705

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009683 ID=TCONS_00009683|Name=TCONS_00009683|organism=Clytia hemisphaerica|type=transcript|length=2705bp
CATTTTTGTAACGCTTCTTCAAAATGATGTCAGCATGTAGCTGGGAAGAT
ATTCCTCTGAATGAGGATGGAAGAATCGAGATCAAACCAGAAGAAAAAAC
GGCCTCAATGAACCGAAAGGATACCAGTATACCGTGCTTATGTTCCGGTT
ATTTATTCAAGCAAGGTGGAACGGGAATTACACCAAAAAACTGGAGATTA
AGATGGTTCGAATTGAAAAAGGATAACTGCTTATATTACTACAAGAACGA
ACAGGATCCTACACCGGCTGGAGCTGTTATTTTAACGAAGTATCAAGTGA
CCAGAGCTGTGGAAGCGAACAAGAGGTTTTCATTCAAGCTAACTAAAGGT
GGAGCCAGAACATACTATTTTGCTGCCAACTCAGAAGACGAAATGAAAAA
ATGGATGAAAAACCTCGGTGAAGCAGTTACCATTGCAATGTCGGACCAGT
CCTCGATCCCAGAATGTAGTTTAAAGAACGTCAGCGTACCAGCAACCTCC
ATTATGGAACCCGATTGTCATGGGTTTCTATGGAAACAAGGAAACTTTCA
CAAATCATGGCGTCGTCGTTACTGTGTCTTGAAATACGGTTGTTTGTTTT
ATTATGAAGAAATCACTGACCAATCAGCTATCGGTGTCTTCAAACTACAC
AATTATACGATCGCCCATTTTGACATGAAGGATTCTAACAAACATGGCAT
CCAAGCTGTGCCGCCTGGTCGTAAAATGCGAACATATTTCTTTTACGCTG
AAAGTGAAATTGATTGGAAAAGATGGATGGAGGCTTTAAAACATTCGATT
CAAGTCAAGAAACCTCCTGTTGGTTCTTGAAAACTTACATTGTGGCGTTT
GGGACGATGTTTCATTTGTGGTTTTAGAAGAAAATGGTACGTTATTTCAA
AATGTGGATTGCAGAAACTTTGCCAATTCAATTCAAGATGCTGCTTGAAT
CGACTCGTCTAAGCAGAGCCTGAGGGTGATACTAGGGTTGTTTTAATCTA
GTACCCAGAGTCACTTGTACAACACTTTGGTTTTTCTGTCTCGTgagcgt
tttagaaaaatcatgaGAAGGCACTGGATAAAAGATTATGGTTTGTTTGA
TGACAAAGTTTGTCTGAAAACCGACCCTAAAGGGAACTAAAGTTCATGTA
CAATGTGATTCCATTTGTGGAAAGATTTGCTATCCTTAGAAAGGCGATGG
GTGAACGACTAATACTTATCGTCTGCTCAACGGCTATTTTTGCCTGagta
ctttttttgtttttaaattcgttttaacaactgcaaacttttttcaagct
catcattttttttcatagcgaTTAAGACCCCACTTCAAATGAGGTTGACT
TTGaagattttctgtaaaataaTTGGCCAATGAATTTGGAGGCTCTGATT
ATTTCTTTCGATGGCTTCagtatttgaaattttgttttacaAAAGACCAC
GTGCTTTGGTGGTACTAGGGTTAGAGAATGCTGGGTATGTGGACTAGACC
TCTGGGAACTGACCTTTAGAGAAACTAAATCTTTGCGAAAAGGTTATTCT
GAGAGAATCAAAATCTTTGCGAAAACGTTACTCTTAGAGAGACAAAATCG
GCGAAAAGTGATCTTTAGAGAGATAATTCTTAAGAAAATTCCTAACCTCA
TAACCTCACAAAgagatttttttgcttttcatGGTTTTTGCCGTCCGAAC
ATACCAACGTATCACCTATTGCTGTCCGTTTTTGAAAGGCTTATGTGATA
GAACCGATAGAATTTAGACGATTCTGAAAACCATCAAAAtcatagtctag
caagctagacgactaatttatacatagtagaaataaagcaaaaagtaatg
aatggaacaattttagtcgtctagaaacctttgtgcactaactccaaaca
aaagaaaagtgtcaagattgcaattataattttttcctgctcaaaatgaa
agtttttcatttgagttgatttcgttttgagagtttgttgatgcttgata
aattgttttctcgctacgcaagtttctgcgtagctagccggggtatctat
aaggctggaacgccggattcttccagtcgtttatacataCTAAATCccat
attattattagtattattagtattacacgcattataaacgactccagtct
atcaaaatcataaaaacgtACGAATCAGACAATTTGTACGAGGTTGGGCC
CATCCGTAAATGGAGCAATTCCCACTACTTTTTTCCTAGAAAATAGGAAA
TGCCCAGATTCTGTAAAAATTTGTatatatttatataaaaagatGTATTT
TTTCTTGTGTGCAAAATAGTGTTTTTGTATTTTAGAGAGTCCTAAAGTGA
ATACTGGGTGGTTTTGATGTATTGCTTTTATAACTATATactttataata
tttttatttgagttttatttttctttcttgaatttttctttcagtgagCG
CAAACTGAATTTGTACCAAAAAATAAgatatctttttcaaaatattattt
tctcaaTATGCTTTTAataatctttattttttagGGAGAAGAATGAtata
gattttagttttatcCTTTTAAGcaaagttttatattttatgatttttac
acTTATCTTAGTTTCTATAAATTTGAGATcgttgatattttgaaattgtt
aaaattgatttatcctttgaaaaagaaattacatAATACATAGTTAATTG
TTAAT
Run BLAST on NCBI

transcript from alignment at sc0000098:15873..35116+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009683 ID=TCONS_00009683|Name=TCONS_00009683|organism=Clytia hemisphaerica|type=transcript|length=19244bp|location=Sequence derived from alignment at sc0000098:15873..35116+ (Clytia hemisphaerica)
CATTTTTGTAACGCTTCTTCAAAATGATGTCAGCATGTAGCTGGGAAGAT
ATTCCTCTGAATGAGGATGGAAGGTGAGACTTGCTACTTGGCTACAAATA
TTTTCACTCgtgacaaaatgaaaatattgtcatttttttatACATTTAGT
GGTATCTTTGAGGAAAAGAATCTATCTAAGTGACATTATACATGGAATca
gatattttttaattttacagaATTTAAATTAAAACACCAACAGAATACCA
GCACTTGCTGCACTTGCTCTAGCCAAAGTGGCCGAGCGACATAGCCTGTC
CCACCCCCACCACGGGCGATTTGATAAATTTTGCCGTATGTCTGTCTGTT
ACGGTTAGAGATTAGATTTTGTGTCTCGCTAATGCCAGCTTTCTGGTACT
AAATCATCGAAAAACAGATGCGTTGGAGTGCtcttttgaaaacgaaaaat
gTCACTTCATTGTGTTGGATAAAGTAACGTTACTTAggccatgttcacac
gttactgttccgtttcgttccggtatgattttcgttacggatcgagtgtg
ttcggaacgtttcggagaaaggaaacggagcagttccgttccgatgaaaa
aagtggagtgaaaccgtttcgatctgttttgctttgtaacgtcttctttt
ttgacgtttcgaattttgacgttcacacttgttttcGGAACTGTTTCGaa
acggaacggaacggaaccgtaacgtctgaacatagTCTTAAAGTGGAGGG
AATTCGAATGCTAAATAAGAACATCATTCACACCGCAGAGGCCAACGAAG
AACTTGCGAGAAATGTCTTAGACATGAAAAAGTACTTAACCATAACATAC
CGTACTTCGCAAACTTTTTCTTGTCaaaagagtttggtacaggctacgAG
CAGCATCACGTTGACGTGATTTGATTCCGTCACAAAGCACAAAATCTCTT
CAACATAAGCATTCCATCCTTAGTACACtcaactctctctctaattcgga
ACTCTATTTTTccaatctttctgtaattcgaactaaaacatcgGTAGCCT
CATCTGGAAAGTGGTATAAAATACTCACCGTaatccgaatctttctataa
atcGATGGAAATTCATGGTTCCtcaaagatcgaattagagagagagaccA
CTGTAGTGTGCTACCATTTACCTTTTCACCCACCCAtcgaaaacaaaaca
acatcTTTTCCAACTAAGGGAATAAAAACGTTGAAATTATTTTACGACGC
AAATGATACCTCAGTTTGTTGACGGCAGAGTTTTTTATCCTCTAGGTAAA
CAATGAGTGTCCTCATGTAAACATTATGCATCGTGCAGGTTTATTCTTAA
GCATTTTCACATTTTCTTATTGCATATCTGATTTTGAATTCAACAGTGTT
CAATACCGTTCGTTATTGGCAGAGCAGCAGTATCATATTTTCGATATCCG
AAAGAACCTTTGTTTCTAATACTCAGAGAGTTTTAGCTTAGGAAAACAAA
AGTTTCTCGGTCTATcaaaagcttgaaaatttcaTATATGAAAATGAATT
AAACTTGATTGTTGATTTAAAAGATGATACTCTCTAGTTAGAATTTGAAG
CAAGGGAGGGGCCAAGAAGTTTTTCGATTTAAAGAAGAaggggctcttcc
agaaaaaaaatttacatgggggtggaggatatattgtccggggggtagca
aaaaatcatcaaaatttgccttgtccggggggtaaattttgGTGTGTAAT
TTGGTgtgtccggggggtcagcagatgcttgtccgggggtaaaacctatt
gtccggggggccaaaagtcaccctgtccggggggtaaatcactaaaagtT
TTTATATCCTCCTCCATCCCccatgtaaaaaaatttttctggaagagccc
aattcgTAATAAAATGATTCTTTAGAAATTGATTCATAAGAGTTCACGGT
GTAATTCTGAATTCTTTTGTGCCTGGTGTAAGTCTGAAAGAATCATATCA
ACAAACATCTATTATAAAAATTCTAGAAAGAActacttattttttctaaa
gccaCAGCAGTTAGAACAAAATTATACGCCAGAGGAGGTTACAGAATTGT
CCTGAtttatctagtgttttatatgaGATATCTGTGACTTCACCCAATGT
TTGGTATTAACCTTTCTGAGACAATAATAGTGCGTTGTAAACGATTAATT
AATTGATTAATTGGTGACAATAAGATTTTCCACGTTTATGCTTTTGAGCT
CTGACTTAACCTCCAATGTACGAAGGGgcttatgttaattattctttttt
ttttgtaccATGTCTCAGCGCTCAATTTGTTGTAAGTTAAGTGAGATTTT
TAATGAGACTCCGATGTTCTTATCATTTGGAACTTTGAACCTAAAAGTGT
TCTTACCCTGTTCTTATCTCTAAGGCAAAAATTGCAAGAATAATTTAGGT
TTAATGCCCTACTTTAACTAATTCGACCCTAAATTTGCTCATAAATAAGC
CACTCAAGGCTTCCtggattgttcttattttcagcatttttgagtctCGT
TGTTCTAATTCGACCATTCATTCGCTTATGATTAAGCCATAGCCAGACTA
TCAactttgttcttaaattgtttctattttttatcatttttgagcctcat
tgttctatACGACCCTTAAAAAATTAGCTTATAATTAAGCCGTTCCAGAC
TGTCAACCTTGTtcctaaattgttcttatttttcggcattttagagtctc
gttgttcttataaaaaagagtgtaaagAGTGTACCAAATAAAGCATTTTA
AGTTGAATGATTGTTGTTGTCCTTGTCAGCTGTATGTGGTGGTCATTAAA
TGTCACCATGAATTTGATTGATTGCAATCTTTCCTGCTTCCTACTTTCAT
TTTAAGGGTTTCTTGCATAAGAAATTCCTGGTCATATTGTGttaatacat
ttttatcaatagggaGGGTTTCAGTCCAAAGAAATGTTAGTAAAcaaatt
cagtcaataatgtaatatatACGGCTTCTGGCGAGATTAGTTTCCAAACG
ATGTTGCGTACCTTAGCTCCAAATTTAAGTTGAGAATCTTTTCGATTCAt
ttttaatgttcttataaaaatcaacTATTTGTGATATTGGCTAAGTCATC
ATTTGTTTATTTTCGCAActgttcttttttaattttgtcatttttttgta
aaGCAATGCTAGAGAGACTGCTAGAGGTTTGGTTTCTCAGTAAactaaag
gttttattttatcAGACTggacttttttataaattttgggAAAGTTTTGC
GATATCAGTTTTATTGTTGTGTTTGGCTACTTATAGAAATCTCTTGTTAT
TTCTGGTATGTGATATTTTAACTTCTTAGTCGAGTGATTAGAAATTGATA
CTAGTAGAATTTTCATCATCTACGTAAAACATTGAAATGACATCATCATA
TCGTAGTTTCCAAGTAAAGCAtggaatttttctttaaaaattagcTGACG
AAAACTATCTACAACGGGGCCACCCAGcgatttgcgtgaatgcgttaATA
CGTGAATTTGGACAAAACGAATTGTGCGATTGCATGAATTAAAGGCCTGC
CTGGGGGCGGGGGGGGCTTTGAAACAagcattgaaaaattttaaccaTTT
TACTGTTTATTTCTGGTATATATTTCTGAAATCTTGCTCTACACTGACCT
CCATGTcatcaaaacttaaaaaaaacaaacattgagaGACACATACTGAC
TTCACTATGGGGTAGTCTATTCCAGACAATTTcacttttgatattttgtg
ataGAGGGGGTCAATGAAACATTATGCAAAATGCAACCAGTATTGGGTTT
CTCGGAAAATGAAATAAGGGGGGCGCTGATGAGCGATAAGGGGCGATGAC
cgagtggtcaaaggcgtcagcgtttCAAACCAGTGTTtcgtggttcgaat
ccccgctcttTCCAACGCACCGTTCTGTTCATAGATAGCCTAGCCGGCTG
GctgtggaccccgtgaaaacaatcaaaagactgACTTAAAGTCCTAGATT
TTTGGCCTATTTACTTTATCTCTATCTCGGACTCTATCTATCCATCAGGA
AGGTCAAAATATACTTTGAAAATCCTTACTTTACTTTTTCTCTACAGAAT
CGAGATCAAACCAGAAGAAAAAACGGCCTCAATGAACCGAAAGGATACCA
GTAAGTATTTCACCCGATTTTTCACCCGATGTTTCATCCGATATTTCACC
CGATATTTCACCCGATTTTTCACCGGATATTTCACCCGGCATTTCACCTA
GCATTTACTTTAAAATCCCGTTGCAAGTTCTTGTAATAATGACGTTATAC
ATGTTTTTGCGACTTCTGCGATAATTTTTCCTCTTTCGCCAAAATTATCT
CCGAGAATTTTAAACATGgcggcaattcgcgaaagtgtGTTTTCTATTCT
TGAAATTCGATCTTTGTCAAATAAAGGATCGCTACTTGCCTTGTAATATT
CAGATTTTATTGTCATGACAACAACAAATAACAAGAAACAAGACTCTTTC
TGATATTATAAGCAACCACCTTTCGTTTTTCATTGATTTAAACATGCACA
AACTATTACATTCCCAAAATAAATCCAAGTCCAACATCACATCTTTGATC
ATGTCATAATCTAATTTAAGATCACGGcataatacaccgtttaggagtct
cgctatcttcacggtactccattaNgcgggaatttaatttcgcggttgca
ggatatttttgaccaaaaacgttagtaaataagcaaaaaacctgttttaa
ggcttgaaatagtacgACTTTGGGAGAATGCGTGaaatagattaaatttc
gcgggaatttaatttcgcggtttgacgattttgtaaaatttcgcgggaac
ttaatttcgcggttttaggcaaaatccgcgaaaaccgcgaaattttgttc
ccgcgaaaatttcttcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNacagatcagaaagcaaagtaataattctattgcagag
cgagtatgagaaataatcttaacgaataaataaaccagctggaagtttag
cttttctaagtgattacacatgcactttcttgcctaaagaaccaacccca
cccccgcccactcatcctcgactaaaaagttcaaaatttgatCTAAAGGA
GAtgaacatttagaagtcaatatttccaagttcttgatttgattgtccag
ataaaatttcggggagaaaaatagccttaaattagaggccacaggctttt
agctaagcattatttttttctgttgggataatacttgggtNaatggtagg
taaaaatgcgcactttagtactgtgaaaggttagaggaatgtaaacattg
tgaatttttttctctcctttaaagagaatgattcagatatttgaacatga
tctcaatgataattttataagtctctcctgaaaatttcacaaaaattcat
caagaggaaaagaagttatgaNtgtgtatgtaataaatagtggtatattt
ggaaaaaacctgtttcgggtttgaaaaatcttcaaaaggaacggtcgccc
cagccaatgaaattacgactaAGTctaaaaacgatcattttcagccataa
cactgtgaaaattactcaaatcttgttcaaatttaacacaggaattgttt
ttttgtatcctttactgaattctcatagtgatatgttgtaaaaaatctgt
cgggtttgaaaaatcaNaaaataaaccagctgcgctggaagctccggctt
aagagattaaaatatgtgaaagatgagcttgttgagttagttgtgttaga
acgttgcccacaaactgataccctaagggaagaaattttcgcgggaattt
aatttcgcggttggtcaaattattttttttcgcgggaatttaatttcgcg
gttcatNATACTGTGAAAActtttccaatcttgttcaaatttacacagga
attgtgttttagtatcctttattgaattctcatagtgatatgtttgtaaa
atatctgtgttgagtttgaaaaatcaaaaggaacggtcgcccagtcaaaa
aatgatgaatacaAAAAAACAGGATCATTTTCAGCCATACACATaacacc
acaaaaactgctcagatcgttttcaaatttgcactgtaatgttgtaattt
tagtattctctttcgaattccaatggatgtgtgtttgaaagtttcattct
attgtcaagttacagagttttatggttttggTTTTGTGCGTCTATTAGAA
CTAAAactagagaagttagccatatgcaagatttaagcactcgagcagct
gacgattcatggccaaaatttctccaaagtctttccacattgttagacca
gtatgcatcaaacttctcatgaagaatcatgtccaaaacatcatgaataa
ggatgaaaatgatcacatctttcactgagatttgcagctAAGCCCACTTT
CGGCCAGtcatctttttctaaaatactttcgcaatattatcgaaatccag
atgatccgtttttattaaatcggaatagatcatcggattagataaacaaa
aaaaaaaatgtcttgaccttgACCGtcgttgtcggaagagagaattaaag
gccctaggccggagcaacaatggaaaattggattgacgcgtgcgcatTCG
ACACTCTTAAACGGTGTATTATATCATTTCCAATTATGTATTGCCTACCA
TACTACCTACTTGAATATCTTGGCGTCCCCCTCTGTTGATCATTTATATC
TGTATAGTGCAGATCGCATACCTTATcgtggaaaaaaatgtcgggggaaa
gtgacaaaCATTTTGAGAGGGTGAtgaaattttcccccgacgattttttc
cccgatattttatcacccgaccaaaacttttacccgattttttaaaccca
aaccaaaattaaaatctaaattttttacacctttagtaagcgaaattagt
gctttaaacgtcggattaaaagatcttttttcgagctagtgaaggaaact
atttcatttggacaatttagttgggtgaaagtgactgaatagtaaatttg
gtcggggaaaagtgacgaatttgaaatttagatcgggggaaagtgacgaa
aatgcctataggtgacgaaatttttccccgacgaaaaaaaaccccgacta
aataaaactctgacatttttttccctgataaggtatTATGCCTTGCCAAT
GTATCTTCTATCAGagtagtgtggtcgtgttacaaaaatacaggctgttt
gtaggaaaaaaataagatctagctgaaactttctccagaccttctctata
ggatggttatacCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNatagtttttcgagagctttcgaatggtatacttg
aaaatgtctgaaaatgagtttgaaattttcaaaaaatttcgcccttaggg
ttttgcctgggaaaaaaagaaatatcccaaaaaagggatgttccaccagt
gggattttaggggaatttttcctgaggtataaccatcctatagagaaggt
ctggagaaagtttcagctagatcatattgttttcccgtaaattatgctgA
ACGACCCAACTAGAGTGGTTTTTAATGTTCCAGATATTTCAGCGGGATAA
GATTTCAGAGGGTTCTTTGCGGTTGAACTTTTATGAGTATGACTTATTTA
TTTGGTGGACAATTTCACtgcaataaagaaaaaaaattgcttcttttcta
aaaaacttttcgaCTTAATAATGTGTTTCACGGGCGAGAAAATCTTCCAT
ATGACTTGTATTATTGCAGTTCCCCGGAAGTGAGCtatttattatatata
tttAATATTCCCATTATTTTGTTGTATAATTGCTTTTTCCGTACTTTAGG
TATACCGTGCTTATGTTCCGGTTATTTATTCAAGCAAGGTGGAACGGGAA
TTACACCAAAAAACTGGAGATTAAGATGGtaagaatgaatgaatgaatga
atgaatgattgattgaatgattgaatgattgaatgaatgaatgataaGTA
AAGAATAAGAGAATTAACGAATGATAAATAAAGATATTGGTGTTGGTCTA
TAGATTTCCATATCTGGATCGTTCATTGTTTTTGATTTACATAAGATTTT
CTAGAAGTAGAACAGTGCTTCATCCGAGATCGTATCGAAGCTTTCTGTTG
TAGAAACCAAAGTTGGTTGCACAGCGTTCTAGAAAACTTCATGACACAGC
AAGTAGTGGCAGTGGACTCAAGCTAGTTGACCTGGGAATCGCCACACAGT
TAGTAGTGGCAGTGGACTCAAGCTAGTTGACCTGGGAATCGCCACACAGT
TAGTAGTGGCAGCGGACTCAAGATAGTTGACCTGGGAATCGCCACACAGT
TAGTAGTGGCAGTGGACTCAAGCTAGTTGACCTGGGAATCGCCACACAGT
GAGTAGTGGCAGTGGACTCAAGCTAGTTGACCTGGGAATCGCCACACAGC
AAGTAGTGGCAGCGGACTCGACAGACCTGGGGATCGCCATTAGAGACCGT
GACAGAATCCATTGCTTCGATTTGCGGTCGAGCAAggatgatgaaaatga
aaatctgatGCTaactttttccttctttttcttctagGTTCGAATTGAAA
AAGGATAACTGCTTATATTACTACAAGAACGAACAGGTTTGCTACCTTAA
AAATTTCCATTGTTTTAATGAAGTGTCTCCTTCTTATAAAGATTTGGCCA
TAATTATCTCAGAAACTTCTCTATGTTTTCTGGTAAATTCGTATCTTTTA
AAGCACAGCTGACGGTCTCTAATTGGATGTTTGACTGTTCGatatgctcc
cttattcgatgatatTGAAAGCCACCCTCAGCAAGAAACtatcataaacg
acgctctatcGTTCGACACGCTCGACACGCTCCCTTATTTGAGAGAGCGC
TAACTGTACACTTCATTTTGCGCTTAAACTTTTGGGGATCTTAAATGATT
TCCGCAGACATAGAGTGGGGTACCCAGTTGGCGTGAGTTTAAAGATTCCC
GTTTACTTATATCGGCAGTATATTTTGCTGGTACTTCTTTTCAGTTCTTC
TGCGTGGACTAATTTCTGGCGAGGAAATATTTCATGTTTTCTTAACATGA
AATGCCATaacgaaaaataggaaaaaataaaactattacgaaagttttca
ctttttcaatTACTGTTACAAAATTGTGCACCCTAACTGCTATGGTGCAT
TTTTATTCCTAAATTTTTCTCTATAAGCTGCTAAAAGATACTTCTTTCAG
ACTCCGAACCTGATTTTCTCTGGAACGCCATAGATTTTgttaaattcatg
atattcatgacgtaatgttttctacggaaacaccccggttttagccatta
gtgtcaaatttaaactagacaaaagttgtataaaatttgccactactgcc
AAAAaacggggtctttccgtagaaaacattacatcatgaatatcataaat
GAGTACCCAAGTCGAAATTCACACCAACTGGGTTATGACGCCAACTGGAT
ACCACACTCTAGTGTAGTATCAAAAAAAATAAGCTTTACATTTGACGTGG
TTTGCTTTCAGGATCCTACACCGGCTGGAGCTGTTATTTTAACGAAGTAT
CAAGTGACCAGAGCTGTGGAAGCGAACAAGAGGTTTTCATTCAAGCTAAC
TAAAGGTGGAGCCAGAACATACTATTTTGCTGCCAACTCAGAAGACGAAA
TGAAAAAGTAAGACTTCCACTTAATACAGTTTTCGGTGTTAAAAGTTGTT
CTTAGATGGTATTAATTTTTCATGCGGTACACATGTGCACTATGTATTTT
TGACGTCATCGtcatttgggccaaaaaacggctaaaaaacgggttttttg
gactttgtgaaaattggatcattaaatttttttgattttttgcatgaaag
tagggtaccatcataggtaaaagatagctcaagcagatttttgctaaaaa
atttatttgtcttaaaaaacacatgtttatctataagaatcactattaag
aagcatacatcaatgttcttagtcaaattactcaatttctttatgagata
gaagttttttttgcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTCTGGGTAAAT
ATTTAAGAATCTTGGCAGACagacaagaaaaaaattcaaaaatttactgT
TTCTAGTGGTTATATGGTTCTATAATTACCGTGTAATGACTGAAAATATC
CTTTTATTTCACTTTCTATCTCTAGATGGATGAAAAACCTCGGTGAAGCA
GTTACCATTGCAATGTCGGACCAGGTATGATTTGAATATCATTTCTTCTC
GTTTTCCATATACAGTGCAGCCTCTTTAACTGGgacttctataactcgaa
tcgAAGTACAAGTGTCTATCACGTATGAGAAAATTAAGCATAAATCAGTG
AAGTCTCTTTAACCCAAACCTCGATAACTCGAATGTGTCCTTAACTCgta
caagttttatggtcccaaCAGTTAACAATAACTTATAAACCTTGCTCCAT
ACAATCGAATGTCACTCGTACAGGTTATGGTCCCAACAGTTAACAATAAC
TTATAAACCTTGCTCCATACAATCGAATGTCACTCGTACAGGTTATGGTC
CCAACAGTTAACAATAACTTATAAACCTTGCTCCATACAATCGAATGTCA
CTCGTACAGGTTATGGTCCCAACAGTTAACAATAACTTATAAACCTTGCT
CCATACAATCGAATGTCACTCGTACAGGTTATGGTCCCAACAGTTAACAA
TAACTTATAAACCTTGCTCCATACAATCGAATGTCACTCGTACAGGTTAT
GGTCCCAACAGTTAACAATAACTTATAAACCTTGCTCCATACAATCGAAT
GTCACTCGTACAGGTTATGGTCCCAACAGTTAACAATAACTTATAAACCT
TGCTCCATACAATCGAATGTCACTCGTACAGGTTATGGTCCCAACAGTTA
ACAATAACTTATAAACCTTGCTCCATACAATCGAATGTCACTCGTACAGG
TTATGGTCCCAACAGTTAACAATAACTTATAAACCTTGCTCCATACAATC
GAATGTCACTCGTACAGGTTATGGTCCCAACAGTTAACAATAACTTATAA
ACCTTGCTCCATACAATCGAATGTCACTCGTACAGGTTATGGTCCCAACA
GTTAACAATAACTTATAAACCTTGCTCCATACAATCGAATGTCACTCGTA
CAGGTTATGGTCCCAACAGTTAACAATAACTTATAAACCTTGCTCCATAC
AATCGAATGTcactttaactcgaatgtcacCTTAACTCGAATGGGTTTTA
TGGTCCCAacagttaacaataccttaaaAGCCTTACTCCATACAATCGAA
TGTCACTCGTATAAGTTTTATGGTCCCAacagttaacaataccttaaaAG
CCTTGCTCCATACAATCGAATGTcactttaactcgaatgtcacCTTAACT
CgtacaagttttatggtcccaaCAGTTAACAATAACTTATAAACCTTGCT
CCATACAATCGAATGTcactttaactcgaatgtcacCTTAACTCGAATGG
GTTTTATGGTCCCAacagttaacaataccttaaaAGCCTTACTCCATACA
ATCGAATGTCACTCgtacaagttttatggtcccaacagttaacaatacct
taaaAGCCTTACTCCATACAATCGAATGTCACTCGTACAGGTTATGGTCC
CAACAGTTAACAATAACTTATAAGCCTTGCTCCATACAATCGAATGTcac
tttaactcgaatgtctccttaactcggacaagttttatggtcccaacagt
taacaataccttaaaAGCCTTACTCCATACAATCGAATGTCACTCGTACA
GGTTATGGTCCCAACAGTTAACAATAACTTATAAGCCTTGCTCCATACAA
TCGAATGTcactttaactcgaatgtctccttaactcggacaagttttatg
gtcccaacagttaacaataccttaaaAGCCTTACTCCATACAATCGAATG
TCACTCGTACAGGTTATGGTCCCAACAGTTAACAATAACTTATAAGCCTT
GCTCCATACAATCGAATGTcactttaactcgaatgtctccttaactcgga
caagttttatggtcccaacagttaacaataccttaaaAGCCTTACTCCAT
ACAATCGAATGTCACTCGTACAGGTTATGGTCCCAACAGTTAACAATAAC
TTATAAGCCTTGCTCCATACAATCGAATGTcactttaactcgaatgtctc
cttaactcggacaagttttatggtcccaacagttaacaataccttaaaAG
CCTTACTCCATACAATCGAATGTCACTCGTACAGGTTATGGTCCCAACAG
TTAACAATAACTTATAAGCCTTGCTCCATACAATCGAATGTcactttaac
tcgaatgtctccttaactcggacaagttttatggtcccaacagttaacaa
taccttaaaAGCCTTACTCCATACAATCGAATGTCACTCGTACAGGTTAT
GGTCCCAACAGTTAACAATAACTTATAAGCCTTGCTCCATACAATCGAAT
GTcactttaactcgaatgtctccttaactcggacaagttttatggtccca
acagttaacaataccttaaaAGCCTTACTCCATACAATCGAATGTCACTC
GTACAGGTTATGGTCCCAACAGTTAACAATAACTTATAAGCCTTGCTCCA
TACAATCGAATGTcactttaactcgaatgtctccttaactcggacaagtt
ttatggtcccaacagttaacaataccttaaaAGCCTTACTCCATACAATC
GAATGTCACTCGTACAGGTTATGGTCCCAACAGTTAACAATAACTTATAA
GCCTTGCTCCATACAATCGAATGTcactttaactcgaatgtctccttaac
tcggacaagttttatggtcccaacagttaacaataccttaaaAGCCTTAC
TCCATACAATCGAATGTCACTCGTACAGGTTATGGTCCCAACAGTTAACA
ATAACTTATAAGCCTTGCTCCATACAATCGAATGTcactttaactcgaat
gtcgCCTTAACTCGAATGGGTTTTATGGTCCCAACAGTTAACAATAACTT
ATAAACCTTGCTCCATACAATCGAATGTcactttaactcgaatgtctcct
taactcaaacaaatttgcgTTACCCGTGCGTTaccgagttatagagactc
cactgtattctTGCCTAAGTCCATGTCTTGTTCAAAATGATTAAAACAAA
GAGTTTTtctatacagttgacgctctctaatttgacgttctatcattcga
tacactccattattcgataatattgaagtCACCGTCTGCatacaagaaac
tctcataaataaCACTCCCTTATTTAATGAAAATCCAacctcttgaaaat
cgaattagagagcgtcaactgcagTGCGATTTCTTTCTACTTTTCCTCTT
AATcttaggtgcctaataaacgcccctcccccCGGCTTGTTAATTGTTCG
ATTTTTCTCCAACCCCATCAGGACCCCCATCCCGTTTATTAATTCTTGAA
AACAatttcagctgtcaaaagaaAAACCTCTTATTCTGCTCTAAAAAGCT
TGGTTCTAGTCTAAAATTACCTTTTTTGGGGGATTTTTTGAGGTACTGTC
AATCAGCTCCCCTTATCGTTTATTAGACACCCGAGGGTAAGTTGTGAATG
AATTTCagaagattttcataccactaCTATTTCTATTTTCAGTCCTCGAT
CCCAGAATGTAGTTTAAAGAACGTCAGCGTACCAGCAACCTCCATTATGG
AACCCGATTGTCATGGGTTTCTATGGAAACAAGGAAACTTTCACAAATCA
TGGCGTCGTCGTTACTGTGTCTTGAAATACGGTTGTTTGTTTTATTATGA
AGAAATCACTGACCAATCAGCTATCGGTGTCTTCAAACTACACAATTATA
CGATCGCCCATTTTGACATGAAGGATTCTAACAAACATGGCATCCAAGCT
GTGCCGCCTGGTCGTAAAATGCGAACATATTTCTTTTACGCTGAAAGTGA
AATTGATTGGAAAAGGTAGAAacttattgggcttttccagaaaataaatt
caatatTGGGGGTGGAGAATATGacactttttggaaatttacccccaccc
ctggacattgtgacttttgaccccccggacagcaggtccaTGGAGAGCcc
attttaagaaaaatggCCTCTATTTTTTAAATAGGTCTCTAGTAAGACGG
TAAGACCAGATATTCACCTTTGAGTTTTCTCGATCTTGGTATGAATCAGA
GTTTGCTTTAGGAGAATTTTGAAGTCATAAGTTAGCAGAGCAGAGCACAG
aaagtattttttaatatacGTGTTTTAATTTGGGCACGCCAAGCAAAAAA
GGATTTCACACGGGGGGTAAAATTCTACATTTGAATTAGCCACAGATATC
ATAGTCCTTTACAAACTAAATAACTGTTCACAAATTTCCCAtggaagtgt
gtccagtttGGAAGGCGACTAGTCCGCCATGTTCACTAATTCACTCTAAA
TTTTCGAACGATTGAATGCCCTGACGACCAAATTGAAAACGAAGTTTGAC
CCAGTCAATTAATTAAGGATCAGTGGAATTGATCGTTAATCTTTCATAAT
TTATTGTTTAGATGGATGGAGGCTTTAAAACATTCGATTCAAGTCAAGAA
ACCTCCTGTTGGTTCTTGAAAACTTACATTGTGGCGTTTGGGACGATGTT
TCATTTGTGGTTTTAGAAGAAAATGGTACGTTATTTCAAAATGTGGATTG
CAGAAACTTTGCCAATTCAATTCAAGATGCTGCTTGAATCGACTCGTCTA
AGCAGAGCCTGAGGGTGATACTAGGGTTGTTTTAATCTAGTACCCAGAGT
CACTTGTACAACACTTTGGTTTTTCTGTCTCGTgagcgttttagaaaaat
catgaGAAGGCACTGGATAAAAGATTATGGTTTGTTTGATGACAAAGTTT
GTCTGAAAACCGACCCTAAAGGGAACTAAAGTTCATGTACAATGTGATTC
CATTTGTGGAAAGATTTGCTATCCTTAGAAAGGCGATGGGTGAACGACTA
ATACTTATCGTCTGCTCAACGGCTATTTTTGCCTGagtactttttttgtt
tttaaattcgttttaacaactgcaaacttttttcaagctcatcatttttt
ttcatagcgaTTAAGACCCCACTTCAAATGAGGTTGACTTTGaagatttt
ctgtaaaataaTTGGCCAATGAATTTGGAGGCTCTGATTATTTCTTTCGA
TGGCTTCagtatttgaaattttgttttacaAAAGACCACGTGCTTTGGTG
GTACTAGGGTTAGAGAATGCTGGGTATGTGGACTAGACCTCTGGGAACTG
ACCTTTAGAGAAACTAAATCTTTGCGAAAAGGTTATTCTGAGAGAATCAA
AATCTTTGCGAAAACGTTACTCTTAGAGAGACAAAATCGGCGAAAAGTGA
TCTTTAGAGAGATAATTCTTAAGAAAATTCCTAACCTCATAACCTCACAA
AgagatttttttgcttttcatGGTTTTTGCCGTCCGAACATACCAACGTA
TCACCTATTGCTGTCCGTTTTTGAAAGGCTTATGTGATAGAACCGATAGA
ATTTAGACGATTCTGAAAACCATCAAAAtcatagtctagcaagctagacg
actaatttatacatagtagaaataaagcaaaaagtaatgaatggaacaat
tttagtcgtctagaaacctttgtgcactaactccaaacaaaagaaaagtg
tcaagattgcaattataattttttcctgctcaaaatgaaagtttttcatt
tgagttgatttcgttttgagagtttgttgatgcttgataaattgttttct
cgctacgcaagtttctgcgtagctagccggggtatctataaggctggaac
gccggattcttccagtcgtttatacataCTAAATCccatattattattag
tattattagtattacacgcattataaacgactccagtctatcaaaatcat
aaaaacgtACGAATCAGACAATTTGTACGAGGTTGGGCCCATCCGTAAAT
GGAGCAATTCCCACTACTTTTTTCCTAGAAAATAGGAAATGCCCAGATTC
TGTAAAAATTTGTatatatttatataaaaagatGTATTTTTTCTTGTGTG
CAAAATAGTGTTTTTGTATTTTAGAGAGTCCTAAAGTGAATACTGGGTGG
TTTTGATGTATTGCTTTTATAACTATATactttataatatttttatttga
gttttatttttctttcttgaatttttctttcagtgagCGCAAACTGAATT
TGTACCAAAAAATAAgatatctttttcaaaatattattttctcaaTATGC
TTTTAataatctttattttttagGGAGAAGAATGAtatagattttagttt
tatcCTTTTAAGcaaagttttatattttatgatttttacacTTATCTTAG
TTTCTATAAATTTGAGATcgttgatattttgaaattgttaaaattgattt
atcctttgaaaaagaaattacatAATACATAGTTAATTGTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005417XLOC_005417Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009683-exon-sc0000098-1491911889:15873..15945TCONS_00009683-exon-sc0000098-1491911889:15873..15945Clytia hemisphaericaexon
TCONS_00009683-exon-sc0000098-1510915933:15873..15945TCONS_00009683-exon-sc0000098-1510915933:15873..15945Clytia hemisphaericaexon
TCONS_00009683-exon-sc0000098-1575043694:15873..15945TCONS_00009683-exon-sc0000098-1575043694:15873..15945Clytia hemisphaericaexon
TCONS_00009683-exon-sc0000098-1491911889:20020..20072TCONS_00009683-exon-sc0000098-1491911889:20020..20072Clytia hemisphaericaexon
TCONS_00009683-exon-sc0000098-1510915933:20020..20072TCONS_00009683-exon-sc0000098-1510915933:20020..20072Clytia hemisphaericaexon
TCONS_00009683-exon-sc0000098-1575043694:20020..20072TCONS_00009683-exon-sc0000098-1575043694:20020..20072Clytia hemisphaericaexon
TCONS_00009683-exon-sc0000098-1491911889:24522..24600TCONS_00009683-exon-sc0000098-1491911889:24522..24600Clytia hemisphaericaexon
TCONS_00009683-exon-sc0000098-1510915933:24522..24600TCONS_00009683-exon-sc0000098-1510915933:24522..24600Clytia hemisphaericaexon
TCONS_00009683-exon-sc0000098-1575043694:24522..24600TCONS_00009683-exon-sc0000098-1575043694:24522..24600Clytia hemisphaericaexon
TCONS_00009683-exon-sc0000098-1491911889:25260..25308TCONS_00009683-exon-sc0000098-1491911889:25260..25308Clytia hemisphaericaexon
TCONS_00009683-exon-sc0000098-1510915933:25260..25308TCONS_00009683-exon-sc0000098-1510915933:25260..25308Clytia hemisphaericaexon
TCONS_00009683-exon-sc0000098-1575043694:25260..25308TCONS_00009683-exon-sc0000098-1575043694:25260..25308Clytia hemisphaericaexon
TCONS_00009683-exon-sc0000098-1491911889:26234..26379TCONS_00009683-exon-sc0000098-1491911889:26234..26379Clytia hemisphaericaexon
TCONS_00009683-exon-sc0000098-1510915933:26234..26379TCONS_00009683-exon-sc0000098-1510915933:26234..26379Clytia hemisphaericaexon
TCONS_00009683-exon-sc0000098-1575043694:26234..26379TCONS_00009683-exon-sc0000098-1575043694:26234..26379Clytia hemisphaericaexon
TCONS_00009683-exon-sc0000098-1491911889:28748..28796TCONS_00009683-exon-sc0000098-1491911889:28748..28796Clytia hemisphaericaexon
TCONS_00009683-exon-sc0000098-1510915933:28748..28796TCONS_00009683-exon-sc0000098-1510915933:28748..28796Clytia hemisphaericaexon
TCONS_00009683-exon-sc0000098-1575043694:28748..28796TCONS_00009683-exon-sc0000098-1575043694:28748..28796Clytia hemisphaericaexon
TCONS_00009683-exon-sc0000098-1491911889:32265..32587TCONS_00009683-exon-sc0000098-1491911889:32265..32587Clytia hemisphaericaexon
TCONS_00009683-exon-sc0000098-1510915933:32265..32587TCONS_00009683-exon-sc0000098-1510915933:32265..32587Clytia hemisphaericaexon
TCONS_00009683-exon-sc0000098-1575043694:32265..32587TCONS_00009683-exon-sc0000098-1575043694:32265..32587Clytia hemisphaericaexon
TCONS_00009683-exon-sc0000098-1491911889:33184..35116TCONS_00009683-exon-sc0000098-1491911889:33184..35116Clytia hemisphaericaexon
TCONS_00009683-exon-sc0000098-1510915933:33184..35116TCONS_00009683-exon-sc0000098-1510915933:33184..35116Clytia hemisphaericaexon
TCONS_00009683-exon-sc0000098-1575043694:33184..35116TCONS_00009683-exon-sc0000098-1575043694:33184..35116Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:15873..35116 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	3.81682e-07	4.38551e-07	0	0	0	0	0.206682	0	0	0	0.174397	0.36056	0.224311	0	0	0	0	0.140639	0	0	0	0	0	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00009683 vs. Swiss-Prot (Human)
Match: PKHA6 (Pleckstrin homology domain-containing family A member 6 OS=Homo sapiens GN=PLEKHA6 PE=1 SV=4)

HSP 1 Score: 85.1149 bits (209), Expect = 9.519e-17
Identity = 48/147 (32.65%), Postives = 84/147 (57.14%), Query Frame = 3 
Query:   96 KTASMNRKDTSIPCLCSGYLFKQGGTGITPKNWRLRWFELKKDNCLYYYKNEQDPTPAGAVILTKYQVTRAVEAN----KRFSFKLTKGGARTYYFAANSEDEMKKWMKNLGEAVTIAMSD-QSSIPECSLKNVSVPATSIMEPDCH 521
            ++ SM R + + P   +G+LFKQ  +G+  K W  RWF L  D CL+YYK+E++ +  G++ L  ++V  AV+ +    ++ +FK    G RTY+F+A S +E + W++ +GEA  + +   Q S+P+    +   P +  + P  H
Sbjct:   48 RSHSMKR-NPNAPVTKAGWLFKQASSGV--KQWNKRWFVLV-DRCLFYYKDEKEESILGSIPLLSFRVA-AVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARVQIPPAQKSVPQAVRHSHEKPDSENVPPSKH 189
The following BLAST results are available for this feature:
BLAST of TCONS_00009683 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PKHA69.519e-1732.65Pleckstrin homology domain-containing family A mem... [more]
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