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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009667 ID=TCONS_00009667|Name=TCONS_00009667|organism=Clytia hemisphaerica|type=transcript|length=2688bp
aattgcctttgaaaaagcCGGACTTTTAAATTGCAGAGGAATGCGGgaga
cataaaagtagtaaaatataGACACtgaaatcacgtgtccaaaataaact
tgtaaaacaattgaacaatcaaaattagccatatttggtttgatttttta
ttttgacaaatttcgtaagtactgttatgtccctttaaggaaAGCAGACA
CATTGGATGTTATTGGAATTGCACTTCTTCGCTGTGTCCTTTTCGTGTAA
AATTTAGAACCATCGAGGCTGGATCGAGGCTATCACACTGATAAATAAAG
CATACGACACAGTGGGGAAGGGTATTTGTATACATTCGTAGGTTAACAAC
AGGTCAGGTAACTCTTCTCCAAGGTTCTGACTTGAAATATCAATCATGAA
AATGATAAGCAATCGTTTGTTGAAAGGATAAATCAAAGATGCTTCCACTC
TTCCTACTTGATAGATTAATGTATTATTAGATAGCATTTTGATAAAGTCA
CGTACACACAATCTGTTGAGCTCATTTCGAGATAGACCTTCAGTTTGTAA
AAAGGTCCAGTTTAAGGAAAAAAGCAAAGAGTTAACTGAAGTTAATTTCC
AGTTATTTGAAAGAAACTTCAACGTAACATTCTTACTGCTATCTTTTACA
AACGAAAACACTGCCACGAGTATGGAAAAACTTTTGATCGCTTTTGCAAT
CTGCTTGGCCATTCAAGGTTATACATGTACCACACAAACGTGTAGTGGAT
ATGATGCTTCAAAGGACCAGTATTATTGTGAATACAGGGAAGGTGACGCT
GCATCCAAAATCATCATCAACGCTCCTCATGGGGGAGGTCTGGTACCGAA
TTCTATCCCCAATCGAAGCAAAGGCTGCTGGGATAGCACCGCTGAGGAAT
GTATATGGAGGCATGATTGTGGATTAGAGTCTGATAATTGCAAAGCAAAG
GTGTTTAGAGATGGTTGGACCAAACCGATTGCGATTGAGCTTGCAGAAGA
GATTAGACAACTGACAGGACAAAGACCACACTTGATCATCAATAACCTGA
AGCGGATTAAGATGGATGGGAATCGTGAAAGGAATCAAGCATGTTTTGGC
GTACCTGAAGCCGAGACTGCTTATGATGAATATCATTCATTCATTGCTAA
AGCtaaaaatgatcattttgctAATCGACGTGGTTTGTTCATTGATGTTC
ACGGGCAGGTTCATAGTCATGGTATGATCGAGCTTGGTTATCAAGTGTTG
AGCCGTCGCTTGAACGAGGATGACCTCGAGGAACGTTTTTCATCGCTTCA
TTACGCCGCCGATCATCTACCGGATGGTTTcacttttgatcaaattttac
gAGGAAACAAAAGCATCGGTTGGTATTTACAGGAGAAAGGTTACCCAACT
ATACCTTCCCCTGCTCACCCGGCACCCAATGGGCTACCTTACTTCATAGG
AGGATATAATACTGAAAGATACGGCTCCAAACGTGGCGGGATGGTTGACG
GCGTCCAGGTGGAGATTCATTCACAGTACAGAACAAGTAATACAGCTGTA
CGTTCAGATTTTGTTAAAGCACTTGCTAAATCTGTTGTAGAATATATGGA
GGATGGCCAATATTAAGGacttgaaaacttttgatgaagtTCTGAAACAG
GAGGAAATATTATAACAcagttgattttactttttttattggttAAATGA
AACTCATACAATTATTGTCTACGATAcaactttcaaaatatattcaaaaa
ctCTATGCTATGGTTTGCGATTGACTTCAAGATACAACATATTTGAGACG
AGTTTAACAAATGGGCTCAAAAAGTTAAACCACGGttgacattttcaatt
ttttataaagGGCGTGTTTTCTTTACAATGGTATATATATATGCTCActa
taaaaaatatgagaagGGAGCGTTTAACTATAATATTTACAAGataaaaa
tttcgttttttctttctgtttaaaatttaaaaaaaactaccTTCCTAGTC
CGACTGACTTAACTTACTCTGGAAAAGCCCTAGGTAATCCGCATCGGGGC
CTATCCGCGTGGAAGGTAGAGCTTTTCACAGGGAAAACCTAGTCAGCACA
CGACAGCCCGTAAGTAAAAAATCCTCCTGTGAGGAGAGTCGAAAGTCGAG
GTTAATGAGAAGGGTGCCGGGAAATCGCCCAGGCGGCGAAAAAAGTCAGG
GAATCAACGGTGAGAgataaaaaccaaaacaaagatggcaacCTCAAGCT
ATGGACTCAGGCAAAATTAGGAGTTTAGGGTTTTGACTCACAAGGTACAA
AGTGAATGGCCGAGAGATATGATAAATAGTTATGCTAACTTTATGTACTT
AtaagttgtttttttcttcataatatAGTTTATAGTTTTTGTATAATAAT
TTTGGTTAATAAAAGACTTCAGGAAATATATGAAAATGTAATCATTAACG
AAAGGAGAAAGATTGAGAGAGGGGATCAACAAACTTCATCTTTGCACCGA
AAAACTTAAAGATATACTGTTATAAATAGTTTTTAACAAcgttttatttt
cttaaaaaaattgatttttcctaAATGAATagtttttaaaaaggttttgc
ATTGGACAACCATTGAGATTAAAGCCCAAATGGCTAGAGTGGAACCTTGA
ATTTACGGCACGTTCAGAATGACGAATCGAATCTAAcg Run BLAST on NCBI protein sequence of TCONS_00009667-protein >TCONS_00009667-protein ID=TCONS_00009667-protein|Name=TCONS_00009667-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
MEKLLIAFAICLAIQGYTCTTQTCSGYDASKDQYYCEYREGDAASKIIIN
APHGGGLVPNSIPNRSKGCWDSTAEECIWRHDCGLESDNCKAKVFRDGWT
KPIAIELAEEIRQLTGQRPHLIINNLKRIKMDGNRERNQACFGVPEAETA
YDEYHSFIAKAKNDHFANRRGLFIDVHGQVHSHGMIELGYQVLSRRLNED
DLEERFSSLHYAADHLPDGFTFDQILRGNKSIGWYLQEKGYPTIPSPAHP
APNGLPYFIGGYNTERYGSKRGGMVDGVQVEIHSQYRTSNTAVRSDFVKA
LAKSVVEYMEDGQY Run BLAST on NCBI transcript from alignment at sc0000097:433990..436677 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009667 ID=TCONS_00009667|Name=TCONS_00009667|organism=Clytia hemisphaerica|type=transcript|length=2688bp|location=Sequence derived from alignment at sc0000097:433990..436677 (Clytia hemisphaerica)
cgTTAGATTCGATTCGTCATTCTGAACGTGCCGTAAATTCAAGGTTCCAC
TCTAGCCATTTGGGCTTTAATCTCAATGGTTGTCCAATgcaaaacctttt
taaaaactATTCATTtaggaaaaatcaatttttttaagaaaataaaacgT
TGTTAAAAACTATTTATAACAGTATATCTTTAAGTTTTTCGGTGCAAAGA
TGAAGTTTGTTGATCCCCTCTCTCAATCTTTCTCCTTTCGTTAATGATTA
CATTTTCATATATTTCCTGAAGTCTTTTATTAACCAAAATTATTATACAA
AAACTATAAACTatattatgaagaaaaaaacaacttaTAAGTACATAAAG
TTAGCATAACTATTTATCATATCTCTCGGCCATTCACTTTGTACCTTGTG
AGTCAAAACCCTAAACTCCTAATTTTGCCTGAGTCCATAGCTTGAGgttg
ccatctttgttttggtttttatcTCTCACCGTTGATTCCCTGACTTTTTT
CGCCGCCTGGGCGATTTCCCGGCACCCTTCTCATTAACCTCGACTTTCGA
CTCTCCTCACAGGAGGATTTTTTACTTACGGGCTGTCGTGTGCTGACTAG
GTTTTCCCTGTGAAAAGCTCTACCTTCCACGCGGATAGGCCCCGATGCGG
ATTACCTAGGGCTTTTCCAGAGTAAGTTAAGTCAGTCGGACTAGGAAggt
agttttttttaaattttaaacagaaagaaaaaacgaaatttttatCTTGT
AAATATTATAGTTAAACGCTCCcttctcatattttttatagTGAGCATAT
ATATATACCATTGTAAAGAAAACACGCCctttataaaaaattgaaaatgt
caaCCGTGGTTTAACTTTTTGAGCCCATTTGTTAAACTCGTCTCAAATAT
GTTGTATCTTGAAGTCAATCGCAAACCATAGCATAGagtttttgaatata
ttttgaaagttgTATCGTAGACAATAATTGTATGAGTTTCATTTaaccaa
taaaaaaagtaaaatcaactgTGTTATAATATTTCCTCCTGTTTCAGAac
ttcatcaaaagttttcaagtCCTTAATATTGGCCATCCTCCATATATTCT
ACAACAGATTTAGCAAGTGCTTTAACAAAATCTGAACGTACAGCTGTATT
ACTTGTTCTGTACTGTGAATGAATCTCCACCTGGACGCCGTCAACCATCC
CGCCACGTTTGGAGCCGTATCTTTCAGTATTATATCCTCCTATGAAGTAA
GGTAGCCCATTGGGTGCCGGGTGAGCAGGGGAAGGTATAGTTGGGTAACC
TTTCTCCTGTAAATACCAACCGATGCTTTTGTTTCCTcgtaaaatttgat
caaaagtgAAACCATCCGGTAGATGATCGGCGGCGTAATGAAGCGATGAA
AAACGTTCCTCGAGGTCATCCTCGTTCAAGCGACGGCTCAACACTTGATA
ACCAAGCTCGATCATACCATGACTATGAACCTGCCCGTGAACATCAATGA
ACAAACCACGTCGATTagcaaaatgatcatttttaGCTTTAGCAATGAAT
GAATGATATTCATCATAAGCAGTCTCGGCTTCAGGTACGCCAAAACATGC
TTGATTCCTTTCACGATTCCCATCCATCTTAATCCGCTTCAGGTTATTGA
TGATCAAGTGTGGTCTTTGTCCTGTCAGTTGTCTAATCTCTTCTGCAAGC
TCAATCGCAATCGGTTTGGTCCAACCATCTCTAAACACCTTTGCTTTGCA
ATTATCAGACTCTAATCCACAATCATGCCTCCATATACATTCCTCAGCGG
TGCTATCCCAGCAGCCTTTGCTTCGATTGGGGATAGAATTCGGTACCAGA
CCTCCCCCATGAGGAGCGTTGATGATGATTTTGGATGCAGCGTCACCTTC
CCTGTATTCACAATAATACTGGTCCTTTGAAGCATCATATCCACTACACG
TTTGTGTGGTACATGTATAACCTTGAATGGCCAAGCAGATTGCAAAAGCG
ATCAAAAGTTTTTCCATACTCGTGGCAGTGTTTTCGTTTGTAAAAGATAG
CAGTAAGAATGTTACGTTGAAGTTTCTTTCAAATAACTGGAAATTAACTT
CAGTTAACTCTTTGCTTTTTTCCTTAAACTGGACCTTTTTACAAACTGAA
GGTCTATCTCGAAATGAGCTCAACAGATTGTGTGTACGTGACTTTATCAA
AATGCTATCTAATAATACATTAATCTATCAAGTAGGAAGAGTGGAAGCAT
CTTTGATTTATCCTTTCAACAAACGATTGCTTATCATTTTCATGATTGAT
ATTTCAAGTCAGAACCTTGGAGAAGAGTTACCTGACCTGTTGTTAACCTA
CGAATGTATACAAATACCCTTCCCCACTGTGTCGTATGCTTTATTTATCA
GTGTGATAGCCTCGATCCAGCCTCGATGGTTCTAAATTTTACACGAAAAG
GACACAGCGAAGAAGTGCAATTCCAATAACATCCAATGTGTCTGCTttcc
ttaaagggacataacagtacttacgaaatttgtcaaaataaaaaatcaaa
ccaaatatggctaattttgattgttcaattgttttacaagtttattttgg
acacgtgatttcaGTGTCtatattttactacttttatgtctcCCGCATTC
CTCTGCAATTTAAAAGTCCGgctttttcaaaggcaatt Coding sequence (CDS) from alignment at sc0000097:433990..436677 >TCONS_00009667 ID=TCONS_00009667|Name=TCONS_00009667|organism=Clytia hemisphaerica|type=CDS|length=945bp|location=Sequence derived from alignment at sc0000097:433990..436677 (Clytia hemisphaerica)
TTAATATTGGCCATCCTCCATATATTCTACAACAGATTTAGCAAGTGCTT
TAACAAAATCTGAACGTACAGCTGTATTACTTGTTCTGTACTGTGAATGA
ATCTCCACCTGGACGCCGTCAACCATCCCGCCACGTTTGGAGCCGTATCT
TTCAGTATTATATCCTCCTATGAAGTAAGGTAGCCCATTGGGTGCCGGGT
GAGCAGGGGAAGGTATAGTTGGGTAACCTTTCTCCTGTAAATACCAACCG
ATGCTTTTGTTTCCTcgtaaaatttgatcaaaagtgAAACCATCCGGTAG
ATGATCGGCGGCGTAATGAAGCGATGAAAAACGTTCCTCGAGGTCATCCT
CGTTCAAGCGACGGCTCAACACTTGATAACCAAGCTCGATCATACCATGA
CTATGAACCTGCCCGTGAACATCAATGAACAAACCACGTCGATTagcaaa
atgatcatttttaGCTTTAGCAATGAATGAATGATATTCATCATAAGCAG
TCTCGGCTTCAGGTACGCCAAAACATGCTTGATTCCTTTCACGATTCCCA
TCCATCTTAATCCGCTTCAGGTTATTGATGATCAAGTGTGGTCTTTGTCC
TGTCAGTTGTCTAATCTCTTCTGCAAGCTCAATCGCAATCGGTTTGGTCC
AACCATCTCTAAACACCTTTGCTTTGCAATTATCAGACTCTAATCCACAA
TCATGCCTCCATATACATTCCTCAGCGGTGCTATCCCAGCAGCCTTTGCT
TCGATTGGGGATAGAATTCGGTACCAGACCTCCCCCATGAGGAGCGTTGA
TGATGATTTTGGATGCAGCGTCACCTTCCCTGTATTCACAATAATACTGG
TCCTTTGAAGCATCATATCCACTACACGTTTGTGTGGTACATGTATAACC
TTGAATGGCCAAGCAGATTGCAAAAGCGATCAAAAGTTTTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009667-exon-sc0000097-1491911889:433990..436677 | TCONS_00009667-exon-sc0000097-1491911889:433990..436677 | Clytia hemisphaerica | exon |
| TCONS_00009667-exon-sc0000097-1510915933:433990..436677 | TCONS_00009667-exon-sc0000097-1510915933:433990..436677 | Clytia hemisphaerica | exon |
| TCONS_00009667-exon-sc0000097-1575043694:433990..436677 | TCONS_00009667-exon-sc0000097-1575043694:433990..436677 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000097 | supercontig | sc0000097:433990..436677 . |
Blast
The following BLAST results are available for this feature:
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