TCONS_00009658 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009658
Unique NameTCONS_00009658
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length797

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009658 ID=TCONS_00009658|Name=TCONS_00009658|organism=Clytia hemisphaerica|type=transcript|length=797bp
TCTGTGTCACAGCCCTGGtaaaactttttcccacagcggGGATGAAATTT
TCCATCGTAATCCCAATTGGAATAGAGATTCTACTATtccaagcttaaaa
aaatcaagtGGACATGTTTTTGGAatgcaattttttacaataaaatttga
atggagatttaatcaaagtcaatttgtGGGGCTGTAATTTTGAGGTACTT
GTAGTACGAAGTtaggccaaattttccagtgaggcTGTGGGGTCCGAGCG
GGTCTGTGAATTATTGGAGTTAATCAAATGTCTACCTATATTTGCGTGGC
ATGGTGTTTTGTTCCGGAGAACTCGCTAACATTTTCATGATTGATCTGGA
CGTTGTCTTCAGCTAAAACGCCATTatttattttgtcaatttttttcgtc
GACATCATTGTCTTTTCTATCGCCATCTTCGTCGCCATTATCGTCATAAT
CATCATAATCGTCAAGAAATACGTCAGCGTCGGCTTTTTCACAACAATCA
CGCAATCTTTCATAAATAAACAGAATTAATGTAACGGTGACAGGTATATT
GACGAGTACAAGGATAAAATAATCCACAACCCTCATACATTCAGGATCAA
ATGGCGTTTGCAAAATTTTTCCACCCTGAACTGCGAAACAGGATCTTCGT
AATTTCTTCGTAGTATATTGATACAATGCACCACCTAATCTGAGCAAAGC
AGCTATTGGTAAAGCCAAAATCCTACCCAAAGATAATAGAGCGTTGCTAC
ACAACATGCAGTTAAGATCTTTTTTGATGATTGCCAAGGCTGAACAA
Run BLAST on NCBI

protein sequence of TCONS_00009658-protein

>TCONS_00009658-protein ID=TCONS_00009658-protein|Name=TCONS_00009658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
CSALAIIKKDLNCMLCSNALLSLGRILALPIAALLRLGGALYQYTTKKLR
RSCFAVQGGKILQTPFDPECMRVVDYFILVLVNIPVTVTLILFIYERLRD
CCEKADADVFLDDYDDYDDNGDEDGDRKDNDVDEKN
Run BLAST on NCBI

transcript from alignment at sc0000097:189413..190209

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009658 ID=TCONS_00009658|Name=TCONS_00009658|organism=Clytia hemisphaerica|type=transcript|length=797bp|location=Sequence derived from alignment at sc0000097:189413..190209 (Clytia hemisphaerica)
TTGTTCAGCCTTGGCAATCATCAAAAAAGATCTTAACTGCATGTTGTGTA
GCAACGCTCTATTATCTTTGGGTAGGATTTTGGCTTTACCAATAGCTGCT
TTGCTCAGATTAGGTGGTGCATTGTATCAATATACTACGAAGAAATTACG
AAGATCCTGTTTCGCAGTTCAGGGTGGAAAAATTTTGCAAACGCCATTTG
ATCCTGAATGTATGAGGGTTGTGGATTATTTTATCCTTGTACTCGTCAAT
ATACCTGTCACCGTTACATTAATTCTGTTTATTTATGAAAGATTGCGTGA
TTGTTGTGAAAAAGCCGACGCTGACGTATTTCTTGACGATTATGATGATT
ATGACGATAATGGCGACGAAGATGGCGATAGAAAAGACAATGATGTCgac
gaaaaaaattgacaaaataaatAATGGCGTTTTAGCTGAAGACAACGTCC
AGATCAATCATGAAAATGTTAGCGAGTTCTCCGGAACAAAACACCATGCC
ACGCAAATATAGGTAGACATTTGATTAACTCCAATAATTCACAGACCCGC
TCGGACCCCACAgcctcactggaaaatttggcctaACTTCGTACTACAAG
TACCTCAAAATTACAGCCCCacaaattgactttgattaaatctccattca
aattttattgtaaaaaattgcatTCCAAAAACATGTCCacttgatttttt
taagcttggaATAGTAGAATCTCTATTCCAATTGGGATTACGATGGAAAA
TTTCATCCccgctgtgggaaaaagttttaCCAGGGCTGTGACACAGA

Coding sequence (CDS) from alignment at sc0000097:189413..190209

>TCONS_00009658 ID=TCONS_00009658|Name=TCONS_00009658|organism=Clytia hemisphaerica|type=CDS|length=411bp|location=Sequence derived from alignment at sc0000097:189413..190209 (Clytia hemisphaerica)
TGTTCAGCCTTGGCAATCATCAAAAAAGATCTTAACTGCATGTTGTGTAG
CAACGCTCTATTATCTTTGGGTAGGATTTTGGCTTTACCAATAGCTGCTT
TGCTCAGATTAGGTGGTGCATTGTATCAATATACTACGAAGAAATTACGA
AGATCCTGTTTCGCAGTTCAGGGTGGAAAAATTTTGCAAACGCCATTTGA
TCCTGAATGTATGAGGGTTGTGGATTATTTTATCCTTGTACTCGTCAATA
TACCTGTCACCGTTACATTAATTCTGTTTATTTATGAAAGATTGCGTGAT
TGTTGTGAAAAAGCCGACGCTGACGTATTTCTTGACGATTATGATGATTA
TGACGATAATGGCGACGAAGATGGCGATAGAAAAGACAATGATGTCgacg
aaaaaaattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005394XLOC_005394Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009658-proteinTCONS_00009658-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009658-exon-sc0000097-1491911889:189413..190209TCONS_00009658-exon-sc0000097-1491911889:189413..190209Clytia hemisphaericaexon
TCONS_00009658-exon-sc0000097-1510915933:189413..190209TCONS_00009658-exon-sc0000097-1510915933:189413..190209Clytia hemisphaericaexon
TCONS_00009658-exon-sc0000097-1575043694:189413..190209TCONS_00009658-exon-sc0000097-1575043694:189413..190209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:189413..190209 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.325467	0.192892	0.310287	0.0726218	0.864352	0.377873	0.305644	0.44202	0.521661	0.416731	0.0342609	0.257371	0.135883	0.0928503	0.128278	0.268467	0	0	0	0	0.0647804	0.173445	0	0	0.0669686	0.0682304
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009658 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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