TCONS_00009656 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009656
Unique NameTCONS_00009656
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length801

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009656 ID=TCONS_00009656|Name=TCONS_00009656|organism=Clytia hemisphaerica|type=transcript|length=801bp
AAAATATTACCATCACGGTGTGTTGATTTGTGTATCAGTTGATTAATGTG
CAAGTCtgctttaaaaacatttaaaacgtcCAGAAGCTGTTTATTGCAAT
TTCATGTTGGGGTTGAAGTCTCTTCATTAAGAGGTGTGTGTGGTATGTTA
AAATCCCCAAGGATGTATGTGTCAGGTGTACAATCAGTAATACTATCAAT
TTTTGCTATCATTGCAGAAAGAAGTTCTTGTAATTCAGGTGCTTCAGATT
TGTGGTCTGGATTGTTGGGTTGTCTGTAGATAACACAGAGaagaatatta
aatttttttgataaaagcgtCAATGCTTCATTTACTCCattcgaaaattc
gaaaatgGGCTCGAAGAATGGTGCAATGTCATTACGCACATAAAATGCAA
CGCCTCCGCTTGCTCTGCCATATTTCGATTTTACTCTGTCTCTGTTTTTC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCATCAGTAAGGGCAGTCAC
TGTCCCAGTAGATTCCTTGGAAATGTTGGTTCCATTGTTGGGTGCTGGGG
TGGTAGATGATGTAGGGGATGTTGACGACTGAATGTTTGTTGAGGTTGAT
GTGACAAATTGTGGTTCCTGAATTGTATTTGTTGGTTTTGGTTGCTGAAA
CAATTGTTCACAAGAGAGATTATTTCTGTGCGAAAGTTGTCCAGGATTGC
AAGAAAATCCTGAAGTTCATCATTacgattgttttgctttttctgaTATC
GTTTGGTTCCCTTAACATGCGTGAATTTGCAGTCAAGATTAAAGCATTCC
C
Run BLAST on NCBI

protein sequence of TCONS_00009656-protein

>TCONS_00009656-protein ID=TCONS_00009656-protein|Name=TCONS_00009656-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
ECFNLDCKFTHVKGTKRYQKKQNNRNDELQDFLAILDNFRTEIISLVNNC
FSNQNQQIQFRNHNLSHQPQQTFSRQHPLHHLPPQHPTMEPTFPRNLLGQ
Run BLAST on NCBI

transcript from alignment at sc0000097:169260..170060

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009656 ID=TCONS_00009656|Name=TCONS_00009656|organism=Clytia hemisphaerica|type=transcript|length=801bp|location=Sequence derived from alignment at sc0000097:169260..170060 (Clytia hemisphaerica)
GGGAATGCTTTAATCTTGACTGCAAATTCACGCATGTTAAGGGAACCAAA
CGATAtcagaaaaagcaaaacaatcgtAATGATGAACTTCAGGATTTTCT
TGCAATCCTGGACAACTTTCGCACAGAAATAATCTCTCTTGTGAACAATT
GTTTCAGCAACCAAAACCAACAAATACAATTCAGGAACCACAATTTGTCA
CATCAACCTCAACAAACATTCAGTCGTCAACATCCCCTACATCATCTACC
ACCCCAGCACCCAACAATGGAACCAACATTTCCAAGGAATCTACTGGGAC
AGTGACTGCCCTTACTGATGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGAAAAACAGAGACAGAGTAAAATCGAAATATGGCAGAGCAAGCGGAGGC
GTTGCATTTTATGTGCGTAATGACATTGCACCATTCTTCGAGCCcatttt
cgaattttcgaatGGAGTAAATGAAGCATTGacgcttttatcaaaaaaat
ttaatattcttCTCTGTGTTATCTACAGACAACCCAACAATCCAGACCAC
AAATCTGAAGCACCTGAATTACAAGAACTTCTTTCTGCAATGATAGCAAA
AATTGATAGTATTACTGATTGTACACCTGACACATACATCCTTGGGGATT
TTAACATACCACACACACCTCTTAATGAAGAGACTTCAACCCCAACATGA
AATTGCAATAAACAGCTTCTGgacgttttaaatgtttttaaagcaGACTT
GCACATTAATCAACTGATACACAAATCAACACACCGTGATGGTAATATTT
T

Coding sequence (CDS) from alignment at sc0000097:169260..170060

>TCONS_00009656 ID=TCONS_00009656|Name=TCONS_00009656|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at sc0000097:169260..170060 (Clytia hemisphaerica)
GAATGCTTTAATCTTGACTGCAAATTCACGCATGTTAAGGGAACCAAACG
ATAtcagaaaaagcaaaacaatcgtAATGATGAACTTCAGGATTTTCTTG
CAATCCTGGACAACTTTCGCACAGAAATAATCTCTCTTGTGAACAATTGT
TTCAGCAACCAAAACCAACAAATACAATTCAGGAACCACAATTTGTCACA
TCAACCTCAACAAACATTCAGTCGTCAACATCCCCTACATCATCTACCAC
CCCAGCACCCAACAATGGAACCAACATTTCCAAGGAATCTACTGGGACAG
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005392XLOC_005392Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009656-proteinTCONS_00009656-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009656-exon-sc0000097-1491911889:169260..170060TCONS_00009656-exon-sc0000097-1491911889:169260..170060Clytia hemisphaericaexon
TCONS_00009656-exon-sc0000097-1510915933:169260..170060TCONS_00009656-exon-sc0000097-1510915933:169260..170060Clytia hemisphaericaexon
TCONS_00009656-exon-sc0000097-1575043694:169260..170060TCONS_00009656-exon-sc0000097-1575043694:169260..170060Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:169260..170060 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.37689	1.83925	2.17849	3.27778	2.73588	1.89511	3.06747	5.04194	1.48961	2.47117	3.42395	1.88594	1.93845	1.79207	0.760042	0.877077	0.840815	1.30041	0.846856	2.39162	1.75663	1.81301	0.979809	1.35222	2.49144	2.16212	4.46683	5.62611	3.99153	3.82994
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009656 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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