|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009654 ID=TCONS_00009654|Name=TCONS_00009654|organism=Clytia hemisphaerica|type=transcript|length=1309bp
GTACTATCTCTGGTTCTTCCGTGCCCCAGTATCCCCATAAAATCTAACAA
ATATTATAATAAAACttgtttccaaaaaaaaatgttacacAGATTTACAT
ACAAATCTTATTTAAATAAATAATCAAAATGATTGCAAATTTTCCATCGT
GGTAATAATCTTTAGTTACTTTACTAACTCTCCACCAATTATTGTCATCT
AAGCATTCCCTGAACTTCATGCTATTTGTGGCGAATTCTGGATGGAGAAG
GAACATTTTTCCACTCTTTGCCACCTTTTTATCTACCCTCTCAACAATAA
AGTCGTATCCTTCTTCGTAGTAGTCGATATCGATGTGTTGTTTTAAACCA
ATAAATAACCACTCACGTTCACACCGCTGGACAAAGTCTTTCTTCATAAA
CATATACTGTTTTGTGTCGATGTTGATAATTTGTTGTTTTCCGTGTGTTA
AGATCAAGCTTATACCCTGGTACCAGTCTTGATAAGACTTGTAAATGGTG
TCgagcaattttttatcttcaaagaACGTATCAACACCCCAAGTTAACTT
TTCCTGATCGGTGAAAACTCGTTTGACCGGTAAACCTGCCTGGGCTTCGT
CCTCTTCCTGCCTTTGATTGTTTTTCGCTTCtaaattttcgattttgttt
CGAAGTGCTTCAATAGTCGCGTCTTTTGCCTTCGTCAATTCAACAAGTTT
CAGGTTGTGATCATTTTCtaaatctttcattttcagttcCATATCCTTGA
GTTTCACGATGTTGTTGTGTCCCAGCTCTTTGATTTGAAGTTTGAAATCG
TTCTCTTTCGTTAGCATTTCCTGGTCTTTTGTCATAAACTTCATTTTGCA
GTCGTTTTCCTTGGTTGCAATCTCCTTGTCTTTCTCGTTCAGTTTTGTCG
TCATCTCGTTTTTCATGTCTGCAATTTCCTTGATTTTCATTGAAagttgt
ttttccatttcatttattttatctTGTAGCTCAGCATCAGCAACGATTTG
TTTCGAATCTATTCCGTGAGAGTTTTTTAACTTGAACAACTCGAATTGAT
GAGATAAAGTTTGATTGTCTTTTTCTAACTGCatggttttcaactttttc
tcattttctgaTTCAAGTTGTTGGATCTTAAACTCCATTTTGagtttctc
aatttcttttaGATGTTCTTCTTTAAGCTTTCTGATTTGCTGGTCGTTAG
TAGTATTTCTCCCGCTAGCGCTGTGAGCCAGATTTCTTTCATCGGCATGT
GCAGAATCCATTTTTGATATATTGAGGTCGAGCACAATTACTTCTGACTG
TAAAACTTA Run BLAST on NCBI protein sequence of TCONS_00009654-protein >TCONS_00009654-protein ID=TCONS_00009654-protein|Name=TCONS_00009654-protein|organism=Clytia hemisphaerica|type=polypeptide|length=388bp
MDSAHADERNLAHSASGRNTTNDQQIRKLKEEHLKEIEKLKMEFKIQQLE
SENEKKLKTMQLEKDNQTLSHQFELFKLKNSHGIDSKQIVADAELQDKIN
EMEKQLSMKIKEIADMKNEMTTKLNEKDKEIATKENDCKMKFMTKDQEML
TKENDFKLQIKELGHNNIVKLKDMELKMKDLENDHNLKLVELTKAKDATI
EALRNKIENLEAKNNQRQEEDEAQAGLPVKRVFTDQEKLTWGVDTFFEDK
KLLDTIYKSYQDWYQGISLILTHGKQQIINIDTKQYMFMKKDFVQRCERE
WLFIGLKQHIDIDYYEEGYDFIVERVDKKVAKSGKMFLLHPEFATNSMKF
RECLDDNNWWRVSKVTKDYYHDGKFAIILIIYLNKICM Run BLAST on NCBI transcript from alignment at sc0000097:130346..131654 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009654 ID=TCONS_00009654|Name=TCONS_00009654|organism=Clytia hemisphaerica|type=transcript|length=1309bp|location=Sequence derived from alignment at sc0000097:130346..131654 (Clytia hemisphaerica)
TAAGTTTTACAGTCAGAAGTAATTGTGCTCGACCTCAATATATCAAAAAT
GGATTCTGCACATGCCGATGAAAGAAATCTGGCTCACAGCGCTAGCGGGA
GAAATACTACTAACGACCAGCAAATCAGAAAGCTTAAAGAAGAACATCta
aaagaaattgagaaactCAAAATGGAGTTTAAGATCCAACAACTTGAAtc
agaaaatgagaaaaagttgaaaaccatGCAGTTAGAAAAAGACAATCAAA
CTTTATCTCATCAATTCGAGTTGTTCAAGTTAAAAAACTCTCACGGAATA
GATTCGAAACAAATCGTTGCTGATGCTGAGCTACAagataaaataaatga
aatggaaaaacaactTTCAATGAAAATCAAGGAAATTGCAGACATGAAAA
ACGAGATGACGACAAAACTGAACGAGAAAGACAAGGAGATTGCAACCAAG
GAAAACGACTGCAAAATGAAGTTTATGACAAAAGACCAGGAAATGCTAAC
GAAAGAGAACGATTTCAAACTTCAAATCAAAGAGCTGGGACACAACAACA
TCGTGAAACTCAAGGATATGgaactgaaaatgaaagatttaGAAAATGAT
CACAACCTGAAACTTGTTGAATTGACGAAGGCAAAAGACGCGACTATTGA
AGCACTTCGaaacaaaatcgaaaatttaGAAGCGAAAAACAATCAAAGGC
AGGAAGAGGACGAAGCCCAGGCAGGTTTACCGGTCAAACGAGTTTTCACC
GATCAGGAAAAGTTAACTTGGGGTGTTGATACGTtctttgaagataaaaa
attgctcGACACCATTTACAAGTCTTATCAAGACTGGTACCAGGGTATAA
GCTTGATCTTAACACACGGAAAACAACAAATTATCAACATCGACACAAAA
CAGTATATGTTTATGAAGAAAGACTTTGTCCAGCGGTGTGAACGTGAGTG
GTTATTTATTGGTTTAAAACAACACATCGATATCGACTACTACGAAGAAG
GATACGACTTTATTGTTGAGAGGGTAGATAAAAAGGTGGCAAAGAGTGGA
AAAATGTTCCTTCTCCATCCAGAATTCGCCACAAATAGCATGAAGTTCAG
GGAATGCTTAGATGACAATAATTGGTGGAGAGTTAGTAAAGTAACTAAAG
ATTATTACCACGATGGAAAATTTGCAATCATTTTGATTATTTATTTAAAT
AAGATTTGTATGTAAATCTgtgtaacatttttttttggaaacaaGTTTTA
TTATAATATTTGTTAGATTTTATGGGGATACTGGGGCACGGAAGAACCAG
AGATAGTAC Coding sequence (CDS) from alignment at sc0000097:130346..131654 >TCONS_00009654 ID=TCONS_00009654|Name=TCONS_00009654|organism=Clytia hemisphaerica|type=CDS|length=1167bp|location=Sequence derived from alignment at sc0000097:130346..131654 (Clytia hemisphaerica)
ATGGATTCTGCACATGCCGATGAAAGAAATCTGGCTCACAGCGCTAGCGG
GAGAAATACTACTAACGACCAGCAAATCAGAAAGCTTAAAGAAGAACATC
taaaagaaattgagaaactCAAAATGGAGTTTAAGATCCAACAACTTGAA
tcagaaaatgagaaaaagttgaaaaccatGCAGTTAGAAAAAGACAATCA
AACTTTATCTCATCAATTCGAGTTGTTCAAGTTAAAAAACTCTCACGGAA
TAGATTCGAAACAAATCGTTGCTGATGCTGAGCTACAagataaaataaat
gaaatggaaaaacaactTTCAATGAAAATCAAGGAAATTGCAGACATGAA
AAACGAGATGACGACAAAACTGAACGAGAAAGACAAGGAGATTGCAACCA
AGGAAAACGACTGCAAAATGAAGTTTATGACAAAAGACCAGGAAATGCTA
ACGAAAGAGAACGATTTCAAACTTCAAATCAAAGAGCTGGGACACAACAA
CATCGTGAAACTCAAGGATATGgaactgaaaatgaaagatttaGAAAATG
ATCACAACCTGAAACTTGTTGAATTGACGAAGGCAAAAGACGCGACTATT
GAAGCACTTCGaaacaaaatcgaaaatttaGAAGCGAAAAACAATCAAAG
GCAGGAAGAGGACGAAGCCCAGGCAGGTTTACCGGTCAAACGAGTTTTCA
CCGATCAGGAAAAGTTAACTTGGGGTGTTGATACGTtctttgaagataaa
aaattgctcGACACCATTTACAAGTCTTATCAAGACTGGTACCAGGGTAT
AAGCTTGATCTTAACACACGGAAAACAACAAATTATCAACATCGACACAA
AACAGTATATGTTTATGAAGAAAGACTTTGTCCAGCGGTGTGAACGTGAG
TGGTTATTTATTGGTTTAAAACAACACATCGATATCGACTACTACGAAGA
AGGATACGACTTTATTGTTGAGAGGGTAGATAAAAAGGTGGCAAAGAGTG
GAAAAATGTTCCTTCTCCATCCAGAATTCGCCACAAATAGCATGAAGTTC
AGGGAATGCTTAGATGACAATAATTGGTGGAGAGTTAGTAAAGTAACTAA
AGATTATTACCACGATGGAAAATTTGCAATCATTTTGATTATTTATTTAA
ATAAGATTTGTATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009654-exon-sc0000097-1491911889:130346..131654 | TCONS_00009654-exon-sc0000097-1491911889:130346..131654 | Clytia hemisphaerica | exon |
| TCONS_00009654-exon-sc0000097-1510915933:130346..131654 | TCONS_00009654-exon-sc0000097-1510915933:130346..131654 | Clytia hemisphaerica | exon |
| TCONS_00009654-exon-sc0000097-1575043694:130346..131654 | TCONS_00009654-exon-sc0000097-1575043694:130346..131654 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000097 | supercontig | sc0000097:130346..131654 . |
Blast
The following BLAST results are available for this feature:
|
