TCONS_00009652 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009652
Unique NameTCONS_00009652
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length689

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009652 ID=TCONS_00009652|Name=TCONS_00009652|organism=Clytia hemisphaerica|type=transcript|length=689bp
TGCCTTTTCCTCAGTAAACTTCTCATGAAATTCCATTGCAGCTCTACGAA
AAATACACCCTTGACTTTACTTAGCTCCCAGACTTTACATTCAACACCCT
TTGAACTCGTACCTAGCTAGTTTTCCTCAATAAACTTCTCATGAGATTCC
ATTGCAGCTCTACGAAAAGTCCGAGAAAGCATTCTAAATTCAAGAAAGAG
CAACACAAGATCATCATGTATCCAAAGAGAAATTGATATCTCAGCCTGCC
ACCACgcctttttataattttgtccAACCGTTTCGGCATACTACCAATAA
TTCTATCAATCTTTCCAACGTCAAAGTTCTCAATGATTGCTTCACCCGGG
CACTGAACTCGTTGAAACTTTCCTTAGTGATTCTGTATTCCAATGCATCC
TGCGATAGCGTTCGACCGACCAagttaaaaatgttctcaatggacttttc
cagaaaaaaaccgtgcaccccctgttgaggaggtccaaccttttgtgacc
tacccccttggaattccaggcaattttaggataatacccctctggaattc
cgaatattttccgaatttttacaaattttcaatcattacccccttggaat
tccgcttatttttgacggattttcgtctacccttatggaattccactgca
tttcaaaccttacccccttggaacggaaatggacctcct
Run BLAST on NCBI

transcript from alignment at sc0000097:37086..37774

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009652 ID=TCONS_00009652|Name=TCONS_00009652|organism=Clytia hemisphaerica|type=transcript|length=689bp|location=Sequence derived from alignment at sc0000097:37086..37774 (Clytia hemisphaerica)
aggaggtccatttccgttccaagggggtaaggtttgaaatgcagtggaat
tccataagggtagacgaaaatccgtcaaaaataagcggaattccaagggg
gtaatgattgaaaatttgtaaaaattcggaaaatattcggaattccagag
gggtattatcctaaaattgcctggaattccaagggggtaggtcacaaaag
gttggacctcctcaacagggggtgcacggtttttttctggaaaagtccat
tgagaacatttttaactTGGTCGGTCGAACGCTATCGCAGGATGCATTGG
AATACAGAATCACTAAGGAAAGTTTCAACGAGTTCAGTGCCCGGGTGAAG
CAATCATTGAGAACTTTGACGTTGGAAAGATTGATAGAATTATTGGTAGT
ATGCCGAAACGGTTggacaaaattataaaaaggcGTGGTGGCAGGCTGAG
ATATCAATTTCTCTTTGGATACATGATGATCTTGTGTTGCTCTTTCTTGA
ATTTAGAATGCTTTCTCGGACTTTTCGTAGAGCTGCAATGGAATCTCATG
AGAAGTTTATTGAGGAAAACTAGCTAGGTACGAGTTCAAAGGGTGTTGAA
TGTAAAGTCTGGGAGCTAAGTAAAGTCAAGGGTGTATTTTTCGTAGAGCT
GCAATGGAATTTCATGAGAAGTTTACTGAGGAAAAGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005388XLOC_005388Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009652-exon-sc0000097-1491911889:37086..37774TCONS_00009652-exon-sc0000097-1491911889:37086..37774Clytia hemisphaericaexon
TCONS_00009652-exon-sc0000097-1510915933:37086..37774TCONS_00009652-exon-sc0000097-1510915933:37086..37774Clytia hemisphaericaexon
TCONS_00009652-exon-sc0000097-1575043694:37086..37774TCONS_00009652-exon-sc0000097-1575043694:37086..37774Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:37086..37774 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.705807	0	3.80049	4.46827	5.48555	5.43034	5.40935	4.37198	0.45314	0.135167	0	0.284958	1.70547	1.19173	1.73018	2.30971	1.73857	1.06061	1.69826	1.74854	1.90509	1.43144	0.500875	0.311909	2.20926	1.94496	3.04643	1.24404	1.74595	0.95007
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009652 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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