TCONS_00009648 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009648
Unique NameTCONS_00009648
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length321

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009648 ID=TCONS_00009648|Name=TCONS_00009648|organism=Clytia hemisphaerica|type=transcript|length=321bp
atgtcaaagtgaGGAACGTTGCATATTGTAGtcatgtgttttaaaaatta
cactgaatgtaaacctcagattaagcacaaaatgtatattattaatatat
atatgtatataatgtatattaaaaaatgtataacaaaagaacagTTAAGC
TAagtggggggaggggggtcatCCAAAAAGCGAACGAAAACGAACAGGGG
GAGGGGGCCAGAAATCTAAGATTAAAAACAAACGTTTCACACATTTCGTG
TGCTTGGTTGAAATTACCTTGGATTACCTTCATGTTTATATTTATGTGGA
AGTTTGTTGATATATGAATCT
Run BLAST on NCBI

transcript from alignment at sc0000097:16902..17222

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009648 ID=TCONS_00009648|Name=TCONS_00009648|organism=Clytia hemisphaerica|type=transcript|length=321bp|location=Sequence derived from alignment at sc0000097:16902..17222 (Clytia hemisphaerica)
AGATTCATATATCAACAAACTTCCACATAAATATAAACATGAAGGTAATC
CAAGGTAATTTCAACCAAGCACACGAAATGTGTGAAACGTTTGTTTTTAA
TCTTAGATTTCTGGCCCCCTCCCCCTGTTCGTTTTCGTTCGCTTTTTGGa
tgacccccctccccccactTAGCTTAActgttcttttgttatacattttt
taatatacattatatacatatatatattaataatatacattttgtgctta
atctgaggtttacattcagtgtaatttttaaaacacatgaCTACAATATG
CAACGTTCCtcactttgacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005384XLOC_005384Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009648-exon-sc0000097-1491911889:16902..17222TCONS_00009648-exon-sc0000097-1491911889:16902..17222Clytia hemisphaericaexon
TCONS_00009648-exon-sc0000097-1510915933:16902..17222TCONS_00009648-exon-sc0000097-1510915933:16902..17222Clytia hemisphaericaexon
TCONS_00009648-exon-sc0000097-1575043694:16902..17222TCONS_00009648-exon-sc0000097-1575043694:16902..17222Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:16902..17222 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.0679	11.6381	3.92086	3.15815	39.1637	17.4123	20.2309	21.3623	8.62799	8.2608	9.61981	10.0694	11.4123	9.9564	8.78834	10.7969	4.34549	7.31036	10.1535	9.31451	25.2367	23.6363	19.9076	17.7664	2.72049	6.06992	59.288	52.5856	47.5841	37.4352
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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