TCONS_00009637 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009637
Unique NameTCONS_00009637
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3051

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009637 ID=TCONS_00009637|Name=TCONS_00009637|organism=Clytia hemisphaerica|type=transcript|length=3051bp
CAAGTTTCATGTGGTAGTTTTTCAAGATCTTAGATATTCCTTATAAATTA
CAAAGATGTCCTCTTCTAGAACTTCCTGATGTTCATGGTAAAATTTATGG
CACCTGCCACGCTCGGTTTTCGCTCAATGATATCATGGAATGACCTGCCA
GTTGATATTAGATTAGCAGACTCTCTTGAAGAAATTACTTGAGAATTtca
caaaagaaaatgaaattccatGCAACTGCAGGTTATGCCGTGATTAAAAA
TCTATTAGGGATTGTTTAAAACCAACGTGAAatgaagaaacaaaaagaaa
taattaacaTTTCTCATATcttatatttttagatttttataaaaattcaa
gaagagaaagatgagcatatttttaCGAAACAAATTGCGTACCTTTGTGG
GTGCCACTTCTGGTCTCTTCGCTTACGGTATGTACCGCCCTGATTGCGAC
CGCCTCGTCAAACAACCATTGGAAACAAACGCCAAATCTGATCACCACGC
TTACACGTTACGTAACCGCGTCTGGACGGAACAAGAGCTGATAGAGAAAT
ATAAAACATGTAAAAATCACGTAGAGCCGTCAAAAACATCAGATTACGTC
ATGTACGGGACGCTCCGTTTCGCGTACAATGCATTTAACGCCGTTACTTT
TTTTGATAAGGACGATCCAACTCCTGAGTCTATGAGAACAAGGCTTATTC
TGCTGGAGTCAATAGCAGGCGTACCGCCCTTCATAATGGCTGGTTACCGC
CATTTTCGTTCCTTACGAAATCTCTCTTACGACGGGGGTCGTATATATAC
TCACCTTGAAGAAGCTGAGAATGAGAGAATGCATTTAGTGACCTGTATGC
AGATCTTCGAAGCAGGTGCACTTATGAAAGGCTCCGTGTTTTTAGCTCAA
ATGGTTGCGACACCTATATGCTGGTTTTTATGTCTTCTGAAGCCACAATG
GCTGAATCGAGGTGTTGGCTACTTGGAAGAGCTGGCGTGTGAAACTTATT
CGTTAGTATTGACACATTGCCATAATCCAGAGAAGAAACTGTATAAAGCA
TGGCATGATAAACCAGCACCCCCGGTTTCTATAGATTACTGGATGTTACC
GAAAGATTCTACTTGGCCTGATGTTTTGAGATATATTTATGCTGACGAGA
CGCACCATCGGGATATCAATCATACATTTGCTGATCTAAGTGTGACGGAT
TCGAACCCACTTTTACGTGAACATAAAGAGAATTATGAGAGGAGTTTAAG
TATTGAATCGAATAAGGAAGTATCTCACTGTCCaaacgaagaaaaataaa
caaaaaaggatGCGAGGGCAAGATATCTTTAAATTTACACCGTTAACAAT
GTACATATACATGCGCATATCAAATcgtaccttatcgggggaaaaaatgt
cgcgggaaagtgacgaaaatgcctctaggtgcagctaggtgacgaaattt
ttccccgacgaaaaaaaacccgactaaataaaactccgacatttttttcc
cagaTAAGGTATATCATTACTAAATTTATTTATGCTTGATTATGGTTGGT
TGATAGACTATTTTAATCCTTTACATtccaataaatgaaaaaatcgaaTG
TAATCTCCTTAAATCGAATGATTACCGATTCCGAAGTTTATGTATTATAA
GTTTATGTATTATATAAAATTGATGTATTATAAATTTATGTATTATAATT
TTTAGCTATTTTCATTCTATACACGAAAAAGCACAAAATACTTTTTGCCT
ACAAATCATGAAATACATACCTtaaatttattattttggactttttttgt
aATTGATTATATTTTTAGGATATTTACTACTTAGCATTTGAATGTTGTGT
CTAATTATTTATTTCCACGCACCAATATTACCTTATTGGTACTAGtttta
gcgggaactaattttagcggtcgaaaaaaaatatccgaaaagttgcattt
cgcgggttttaattttcgcggttttttcattctggaattttcgcgggttt
taattttcacgattttgccctattttggacaattttttttcattttccta
tggatttttcaaatttttcgataaaattggaaaaaattgtgtttcgtggg
aattaattttcgcggtttttaactctcaaaatttttcgcgggttcaaatt
ttgacgaaaaaccgcgaaaaacgctaaaattaattcccgcgaaaattagt
tccaataaggtaatcAAACCTTTTAGGTTTTTTTCTAGAAATGGGTAGTG
CCTGGAAAATTTGTCGAAGGGGAGAAAGTGACCAACCGGATGTGTGACAC
AGGTGTGTAGCAAGATATCACTGCATATCACATTATTTCTGCGCTGTAAC
AGGCTCATTAAacaactttctttttaatttatatatgcaaaatatatata
atttttttttttaatatttatttaaataaagatttttaaatagaTTTTGA
AATCCCCGGTAGAATATAAGTATTCTTCTTCATTTgtcgaaatttttcga
aattgtacacgctttttttttataaaaatgaatattcttaacttttttgg
gaagatcatcctaaaatattcttacagcattcttaggttaggatcctaat
tcagactagatttaacatttagtacattacgtctcaagcataaaatggca
tttttgtgaaggagtgagccttacttgggggtaattggcaatttataatt
gaaaatgctctaaaaatggcattcttagcttgagtagccaaattccatga
aggtgatattcttagctttttggccattttcatcatggacattcttataa
agtgtattcttataaaaaaaaagcctGTATTTTTTCCCAAAGGTTATAGT
GctctgaattttcttttaacAGTTCATAATCTGTTGGTATTGAAGCATTG
GTTAAAAAATGACaagcaaaaagaaagaataaGCGCAGATTAGTTTGCAG
TTAAAGCGAAAATCTTATTCAATTCTGTAATTCGATTGGTTCTTTTTTTA
GTTGCAAGTAATTTTGATTGgctctttttttagttttagattCATTATga
t
Run BLAST on NCBI

transcript from alignment at sc0000097:448823..451873-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009637 ID=TCONS_00009637|Name=TCONS_00009637|organism=Clytia hemisphaerica|type=transcript|length=3051bp|location=Sequence derived from alignment at sc0000097:448823..451873- (Clytia hemisphaerica)
CAAGTTTCATGTGGTAGTTTTTCAAGATCTTAGATATTCCTTATAAATTA CAAAGATGTCCTCTTCTAGAACTTCCTGATGTTCATGGTAAAATTTATGG CACCTGCCACGCTCGGTTTTCGCTCAATGATATCATGGAATGACCTGCCA GTTGATATTAGATTAGCAGACTCTCTTGAAGAAATTACTTGAGAATTTCA CAAAAGAAAATGAAATTCCATGCAACTGCAGGTTATGCCGTGATTAAAAA TCTATTAGGGATTGTTTAAAACCAACGTGAAATGAAGAAACAAAAAGAAA TAATTAACATTTCTCATATCTTATATTTTTAGATTTTTATAAAAATTCAA GAAGAGAAAGATGAGCATATTTTTACGAAACAAATTGCGTACCTTTGTGG GTGCCACTTCTGGTCTCTTCGCTTACGGTATGTACCGCCCTGATTGCGAC CGCCTCGTCAAACAACCATTGGAAACAAACGCCAAATCTGATCACCACGC TTACACGTTACGTAACCGCGTCTGGACGGAACAAGAGCTGATAGAGAAAT ATAAAACATGTAAAAATCACGTAGAGCCGTCAAAAACATCAGATTACGTC ATGTACGGGACGCTCCGTTTCGCGTACAATGCATTTAACGCCGTTACTTT TTTTGATAAGGACGATCCAACTCCTGAGTCTATGAGAACAAGGCTTATTC TGCTGGAGTCAATAGCAGGCGTACCGCCCTTCATAATGGCTGGTTACCGC CATTTTCGTTCCTTACGAAATCTCTCTTACGACGGGGGTCGTATATATAC TCACCTTGAAGAAGCTGAGAATGAGAGAATGCATTTAGTGACCTGTATGC AGATCTTCGAAGCAGGTGCACTTATGAAAGGCTCCGTGTTTTTAGCTCAA ATGGTTGCGACACCTATATGCTGGTTTTTATGTCTTCTGAAGCCACAATG GCTGAATCGAGGTGTTGGCTACTTGGAAGAGCTGGCGTGTGAAACTTATT CGTTAGTATTGACACATTGCCATAATCCAGAGAAGAAACTGTATAAAGCA TGGCATGATAAACCAGCACCCCCGGTTTCTATAGATTACTGGATGTTACC GAAAGATTCTACTTGGCCTGATGTTTTGAGATATATTTATGCTGACGAGA CGCACCATCGGGATATCAATCATACATTTGCTGATCTAAGTGTGACGGAT TCGAACCCACTTTTACGTGAACATAAAGAGAATTATGAGAGGAGTTTAAG TATTGAATCGAATAAGGAAGTATCTCACTGTCCAAACGAAGAAAAATAAA CAAAAAAGGATGCGAGGGCAAGATATCTTTAAATTTACACCGTTAACAAT GTACATATACATGCGCATATCAAATCGTACCTTATCGGGGGAAAAAATGT CGCGGGAAAGTGACGAAAATGCCTCTAGGTGCAGCTAGGTGACGAAATTT TTCCCCGACGAAAAAAAACCCGACTAAATAAAACTCCGACATTTTTTTCC CAGATAAGGTATATCATTACTAAATTTATTTATGCTTGATTATGGTTGGT TGATAGACTATTTTAATCCTTTACATTCCAATAAATGAAAAAATCGAATG TAATCTCCTTAAATCGAATGATTACCGATTCCGAAGTTTATGTATTATAA GTTTATGTATTATATAAAATTGATGTATTATAAATTTATGTATTATAATT TTTAGCTATTTTCATTCTATACACGAAAAAGCACAAAATACTTTTTGCCT ACAAATCATGAAATACATACCTTAAATTTATTATTTTGGACTTTTTTTGT AATTGATTATATTTTTAGGATATTTACTACTTAGCATTTGAATGTTGTGT CTAATTATTTATTTCCACGCACCAATATTACCTTATTGGTACTAGTTTTA GCGGGAACTAATTTTAGCGGTCGAAAAAAAATATCCGAAAAGTTGCATTT CGCGGGTTTTAATTTTCGCGGTTTTTTCATTCTGGAATTTTCGCGGGTTT TAATTTTCACGATTTTGCCCTATTTTGGACAATTTTTTTTCATTTTCCTA TGGATTTTTCAAATTTTTCGATAAAATTGGAAAAAATTGTGTTTCGTGGG AATTAATTTTCGCGGTTTTTAACTCTCAAAATTTTTCGCGGGTTCAAATT TTGACGAAAAACCGCGAAAAACGCTAAAATTAATTCCCGCGAAAATTAGT TCCAATAAGGTAATCAAACCTTTTAGGTTTTTTTCTAGAAATGGGTAGTG CCTGGAAAATTTGTCGAAGGGGAGAAAGTGACCAACCGGATGTGTGACAC AGGTGTGTAGCAAGATATCACTGCATATCACATTATTTCTGCGCTGTAAC AGGCTCATTAAACAACTTTCTTTTTAATTTATATATGCAAAATATATATA ATTTTTTTTTTTAATATTTATTTAAATAAAGATTTTTAAATAGATTTTGA AATCCCCGGTAGAATATAAGTATTCTTCTTCATTTGTCGAAATTTTTCGA AATTGTACACGCTTTTTTTTTATAAAAATGAATATTCTTAACTTTTTTGG GAAGATCATCCTAAAATATTCTTACAGCATTCTTAGGTTAGGATCCTAAT TCAGACTAGATTTAACATTTAGTACATTACGTCTCAAGCATAAAATGGCA TTTTTGTGAAGGAGTGAGCCTTACTTGGGGGTAATTGGCAATTTATAATT GAAAATGCTCTAAAAATGGCATTCTTAGCTTGAGTAGCCAAATTCCATGA AGGTGATATTCTTAGCTTTTTGGCCATTTTCATCATGGACATTCTTATAA AGTGTATTCTTATAAAAAAAAAGCCTGTATTTTTTCCCAAAGGTTATAGT GCTCTGAATTTTCTTTTAACAGTTCATAATCTGTTGGTATTGAAGCATTG GTTAAAAAATGACAAGCAAAAAGAAAGAATAAGCGCAGATTAGTTTGCAG TTAAAGCGAAAATCTTATTCAATTCTGTAATTCGATTGGTTCTTTTTTTA GTTGCAAGTAATTTTGATTGGCTCTTTTTTTAGTTTTAGATTCATTATGA T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005377XLOC_005377Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009637-exon-sc0000097-1575043694:448823..451873TCONS_00009637-exon-sc0000097-1575043694:448823..451873Clytia hemisphaericaexon
TCONS_00009637-exon-sc0000097-1510915933:448823..451873TCONS_00009637-exon-sc0000097-1510915933:448823..451873Clytia hemisphaericaexon
TCONS_00009637-exon-sc0000097-1491911889:448823..451873TCONS_00009637-exon-sc0000097-1491911889:448823..451873Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:448823..451873 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.200217 0 0 0 0.3346 0 0 0 0 1.57817 0 0 0.133043 0.444756 0 0 0 0 0 0 0 0 0 0 0 0.475457 0 0 0.256472 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009637 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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