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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009637 ID=TCONS_00009637|Name=TCONS_00009637|organism=Clytia hemisphaerica|type=transcript|length=3051bp CAAGTTTCATGTGGTAGTTTTTCAAGATCTTAGATATTCCTTATAAATTA CAAAGATGTCCTCTTCTAGAACTTCCTGATGTTCATGGTAAAATTTATGG CACCTGCCACGCTCGGTTTTCGCTCAATGATATCATGGAATGACCTGCCA GTTGATATTAGATTAGCAGACTCTCTTGAAGAAATTACTTGAGAATTtca caaaagaaaatgaaattccatGCAACTGCAGGTTATGCCGTGATTAAAAA TCTATTAGGGATTGTTTAAAACCAACGTGAAatgaagaaacaaaaagaaa taattaacaTTTCTCATATcttatatttttagatttttataaaaattcaa gaagagaaagatgagcatatttttaCGAAACAAATTGCGTACCTTTGTGG GTGCCACTTCTGGTCTCTTCGCTTACGGTATGTACCGCCCTGATTGCGAC CGCCTCGTCAAACAACCATTGGAAACAAACGCCAAATCTGATCACCACGC TTACACGTTACGTAACCGCGTCTGGACGGAACAAGAGCTGATAGAGAAAT ATAAAACATGTAAAAATCACGTAGAGCCGTCAAAAACATCAGATTACGTC ATGTACGGGACGCTCCGTTTCGCGTACAATGCATTTAACGCCGTTACTTT TTTTGATAAGGACGATCCAACTCCTGAGTCTATGAGAACAAGGCTTATTC TGCTGGAGTCAATAGCAGGCGTACCGCCCTTCATAATGGCTGGTTACCGC CATTTTCGTTCCTTACGAAATCTCTCTTACGACGGGGGTCGTATATATAC TCACCTTGAAGAAGCTGAGAATGAGAGAATGCATTTAGTGACCTGTATGC AGATCTTCGAAGCAGGTGCACTTATGAAAGGCTCCGTGTTTTTAGCTCAA ATGGTTGCGACACCTATATGCTGGTTTTTATGTCTTCTGAAGCCACAATG GCTGAATCGAGGTGTTGGCTACTTGGAAGAGCTGGCGTGTGAAACTTATT CGTTAGTATTGACACATTGCCATAATCCAGAGAAGAAACTGTATAAAGCA TGGCATGATAAACCAGCACCCCCGGTTTCTATAGATTACTGGATGTTACC GAAAGATTCTACTTGGCCTGATGTTTTGAGATATATTTATGCTGACGAGA CGCACCATCGGGATATCAATCATACATTTGCTGATCTAAGTGTGACGGAT TCGAACCCACTTTTACGTGAACATAAAGAGAATTATGAGAGGAGTTTAAG TATTGAATCGAATAAGGAAGTATCTCACTGTCCaaacgaagaaaaataaa caaaaaaggatGCGAGGGCAAGATATCTTTAAATTTACACCGTTAACAAT GTACATATACATGCGCATATCAAATcgtaccttatcgggggaaaaaatgt cgcgggaaagtgacgaaaatgcctctaggtgcagctaggtgacgaaattt ttccccgacgaaaaaaaacccgactaaataaaactccgacatttttttcc cagaTAAGGTATATCATTACTAAATTTATTTATGCTTGATTATGGTTGGT TGATAGACTATTTTAATCCTTTACATtccaataaatgaaaaaatcgaaTG TAATCTCCTTAAATCGAATGATTACCGATTCCGAAGTTTATGTATTATAA GTTTATGTATTATATAAAATTGATGTATTATAAATTTATGTATTATAATT TTTAGCTATTTTCATTCTATACACGAAAAAGCACAAAATACTTTTTGCCT ACAAATCATGAAATACATACCTtaaatttattattttggactttttttgt aATTGATTATATTTTTAGGATATTTACTACTTAGCATTTGAATGTTGTGT CTAATTATTTATTTCCACGCACCAATATTACCTTATTGGTACTAGtttta gcgggaactaattttagcggtcgaaaaaaaatatccgaaaagttgcattt cgcgggttttaattttcgcggttttttcattctggaattttcgcgggttt taattttcacgattttgccctattttggacaattttttttcattttccta tggatttttcaaatttttcgataaaattggaaaaaattgtgtttcgtggg aattaattttcgcggtttttaactctcaaaatttttcgcgggttcaaatt ttgacgaaaaaccgcgaaaaacgctaaaattaattcccgcgaaaattagt tccaataaggtaatcAAACCTTTTAGGTTTTTTTCTAGAAATGGGTAGTG CCTGGAAAATTTGTCGAAGGGGAGAAAGTGACCAACCGGATGTGTGACAC AGGTGTGTAGCAAGATATCACTGCATATCACATTATTTCTGCGCTGTAAC AGGCTCATTAAacaactttctttttaatttatatatgcaaaatatatata atttttttttttaatatttatttaaataaagatttttaaatagaTTTTGA AATCCCCGGTAGAATATAAGTATTCTTCTTCATTTgtcgaaatttttcga aattgtacacgctttttttttataaaaatgaatattcttaacttttttgg gaagatcatcctaaaatattcttacagcattcttaggttaggatcctaat tcagactagatttaacatttagtacattacgtctcaagcataaaatggca tttttgtgaaggagtgagccttacttgggggtaattggcaatttataatt gaaaatgctctaaaaatggcattcttagcttgagtagccaaattccatga aggtgatattcttagctttttggccattttcatcatggacattcttataa agtgtattcttataaaaaaaaagcctGTATTTTTTCCCAAAGGTTATAGT GctctgaattttcttttaacAGTTCATAATCTGTTGGTATTGAAGCATTG GTTAAAAAATGACaagcaaaaagaaagaataaGCGCAGATTAGTTTGCAG TTAAAGCGAAAATCTTATTCAATTCTGTAATTCGATTGGTTCTTTTTTTA GTTGCAAGTAATTTTGATTGgctctttttttagttttagattCATTATga t Run BLAST on NCBI transcript from alignment at sc0000097:448823..451873- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009637 ID=TCONS_00009637|Name=TCONS_00009637|organism=Clytia hemisphaerica|type=transcript|length=3051bp|location=Sequence derived from alignment at sc0000097:448823..451873- (Clytia hemisphaerica) CAAGTTTCATGTGGTAGTTTTTCAAGATCTTAGATATTCCTTATAAATTA
CAAAGATGTCCTCTTCTAGAACTTCCTGATGTTCATGGTAAAATTTATGG
CACCTGCCACGCTCGGTTTTCGCTCAATGATATCATGGAATGACCTGCCA
GTTGATATTAGATTAGCAGACTCTCTTGAAGAAATTACTTGAGAATTTCA
CAAAAGAAAATGAAATTCCATGCAACTGCAGGTTATGCCGTGATTAAAAA
TCTATTAGGGATTGTTTAAAACCAACGTGAAATGAAGAAACAAAAAGAAA
TAATTAACATTTCTCATATCTTATATTTTTAGATTTTTATAAAAATTCAA
GAAGAGAAAGATGAGCATATTTTTACGAAACAAATTGCGTACCTTTGTGG
GTGCCACTTCTGGTCTCTTCGCTTACGGTATGTACCGCCCTGATTGCGAC
CGCCTCGTCAAACAACCATTGGAAACAAACGCCAAATCTGATCACCACGC
TTACACGTTACGTAACCGCGTCTGGACGGAACAAGAGCTGATAGAGAAAT
ATAAAACATGTAAAAATCACGTAGAGCCGTCAAAAACATCAGATTACGTC
ATGTACGGGACGCTCCGTTTCGCGTACAATGCATTTAACGCCGTTACTTT
TTTTGATAAGGACGATCCAACTCCTGAGTCTATGAGAACAAGGCTTATTC
TGCTGGAGTCAATAGCAGGCGTACCGCCCTTCATAATGGCTGGTTACCGC
CATTTTCGTTCCTTACGAAATCTCTCTTACGACGGGGGTCGTATATATAC
TCACCTTGAAGAAGCTGAGAATGAGAGAATGCATTTAGTGACCTGTATGC
AGATCTTCGAAGCAGGTGCACTTATGAAAGGCTCCGTGTTTTTAGCTCAA
ATGGTTGCGACACCTATATGCTGGTTTTTATGTCTTCTGAAGCCACAATG
GCTGAATCGAGGTGTTGGCTACTTGGAAGAGCTGGCGTGTGAAACTTATT
CGTTAGTATTGACACATTGCCATAATCCAGAGAAGAAACTGTATAAAGCA
TGGCATGATAAACCAGCACCCCCGGTTTCTATAGATTACTGGATGTTACC
GAAAGATTCTACTTGGCCTGATGTTTTGAGATATATTTATGCTGACGAGA
CGCACCATCGGGATATCAATCATACATTTGCTGATCTAAGTGTGACGGAT
TCGAACCCACTTTTACGTGAACATAAAGAGAATTATGAGAGGAGTTTAAG
TATTGAATCGAATAAGGAAGTATCTCACTGTCCAAACGAAGAAAAATAAA
CAAAAAAGGATGCGAGGGCAAGATATCTTTAAATTTACACCGTTAACAAT
GTACATATACATGCGCATATCAAATCGTACCTTATCGGGGGAAAAAATGT
CGCGGGAAAGTGACGAAAATGCCTCTAGGTGCAGCTAGGTGACGAAATTT
TTCCCCGACGAAAAAAAACCCGACTAAATAAAACTCCGACATTTTTTTCC
CAGATAAGGTATATCATTACTAAATTTATTTATGCTTGATTATGGTTGGT
TGATAGACTATTTTAATCCTTTACATTCCAATAAATGAAAAAATCGAATG
TAATCTCCTTAAATCGAATGATTACCGATTCCGAAGTTTATGTATTATAA
GTTTATGTATTATATAAAATTGATGTATTATAAATTTATGTATTATAATT
TTTAGCTATTTTCATTCTATACACGAAAAAGCACAAAATACTTTTTGCCT
ACAAATCATGAAATACATACCTTAAATTTATTATTTTGGACTTTTTTTGT
AATTGATTATATTTTTAGGATATTTACTACTTAGCATTTGAATGTTGTGT
CTAATTATTTATTTCCACGCACCAATATTACCTTATTGGTACTAGTTTTA
GCGGGAACTAATTTTAGCGGTCGAAAAAAAATATCCGAAAAGTTGCATTT
CGCGGGTTTTAATTTTCGCGGTTTTTTCATTCTGGAATTTTCGCGGGTTT
TAATTTTCACGATTTTGCCCTATTTTGGACAATTTTTTTTCATTTTCCTA
TGGATTTTTCAAATTTTTCGATAAAATTGGAAAAAATTGTGTTTCGTGGG
AATTAATTTTCGCGGTTTTTAACTCTCAAAATTTTTCGCGGGTTCAAATT
TTGACGAAAAACCGCGAAAAACGCTAAAATTAATTCCCGCGAAAATTAGT
TCCAATAAGGTAATCAAACCTTTTAGGTTTTTTTCTAGAAATGGGTAGTG
CCTGGAAAATTTGTCGAAGGGGAGAAAGTGACCAACCGGATGTGTGACAC
AGGTGTGTAGCAAGATATCACTGCATATCACATTATTTCTGCGCTGTAAC
AGGCTCATTAAACAACTTTCTTTTTAATTTATATATGCAAAATATATATA
ATTTTTTTTTTTAATATTTATTTAAATAAAGATTTTTAAATAGATTTTGA
AATCCCCGGTAGAATATAAGTATTCTTCTTCATTTGTCGAAATTTTTCGA
AATTGTACACGCTTTTTTTTTATAAAAATGAATATTCTTAACTTTTTTGG
GAAGATCATCCTAAAATATTCTTACAGCATTCTTAGGTTAGGATCCTAAT
TCAGACTAGATTTAACATTTAGTACATTACGTCTCAAGCATAAAATGGCA
TTTTTGTGAAGGAGTGAGCCTTACTTGGGGGTAATTGGCAATTTATAATT
GAAAATGCTCTAAAAATGGCATTCTTAGCTTGAGTAGCCAAATTCCATGA
AGGTGATATTCTTAGCTTTTTGGCCATTTTCATCATGGACATTCTTATAA
AGTGTATTCTTATAAAAAAAAAGCCTGTATTTTTTCCCAAAGGTTATAGT
GCTCTGAATTTTCTTTTAACAGTTCATAATCTGTTGGTATTGAAGCATTG
GTTAAAAAATGACAAGCAAAAAGAAAGAATAAGCGCAGATTAGTTTGCAG
TTAAAGCGAAAATCTTATTCAATTCTGTAATTCGATTGGTTCTTTTTTTA
GTTGCAAGTAATTTTGATTGGCTCTTTTTTTAGTTTTAGATTCATTATGA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00009637-exon-sc0000097-1575043694:448823..451873 | TCONS_00009637-exon-sc0000097-1575043694:448823..451873 | Clytia hemisphaerica | exon |
TCONS_00009637-exon-sc0000097-1510915933:448823..451873 | TCONS_00009637-exon-sc0000097-1510915933:448823..451873 | Clytia hemisphaerica | exon |
TCONS_00009637-exon-sc0000097-1491911889:448823..451873 | TCONS_00009637-exon-sc0000097-1491911889:448823..451873 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000097 | supercontig | sc0000097:448823..451873 - |
Blast
The following BLAST results are available for this feature:
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