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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009634 ID=TCONS_00009634|Name=TCONS_00009634|organism=Clytia hemisphaerica|type=transcript|length=2808bp
AGGTCTCCAAATCTCTAAAAACAAAGCCAAATCCAAGTTTCATGTGattt
ttataaaaattcaagaagagaaagatgagcatatttttaCGAAACAAATT
GCGTACCTTTGTGGGTGCCACTTCTGGTCTCTTCGCTTACGGTATGTACC
GCCCTGATTGCGACCGCCTCGTCAAACAACCATTGGAAACAAACGCCAAA
TCTGATCACCACGCTTACACGTTACGTAACCGCGTCTGGACGGAACAAGA
GCTGATAGAGAAATATAAAACATGTAAAAATCACGTAGAGCCGTCAAAAA
CATCAGATTACGTCATGTACGGGACGCTCCGTTTCGCGTACAATGCATTT
AACGCCGTTACTTTTTTTGATAAGGACGATCCAACTCCTGAGTCTATGAG
AACAAGGCTTATTCTGCTGGAGTCAATAGCAGGCGTACCGCCCTTCATAA
TGGCTGGTTACCGCCATTTTCGTTCCTTACGAAATCTCTCTTACGACGGG
GGTCGTATATATACTCACCTTGAAGAAGCTGAGAATGAGAGAATGCATTT
AGTGACCTGTATGCAGATCTTCGAAGCAGGTGCACTTATGAAAGGCTCCG
TGTTTTTAGCTCAAATGGTTGCGACACCTATATGCTGGTTTTTATGTCTT
CTGAAGCCACAATGGCTGAATCGAGGTGTTGGCTACTTGGAAGAGCTGGC
GTGTGAAACTTATTCGTTAGTATTGACACATTGCCATAATCCAGAGAAGA
AACTGTATAAAGCATGGCATGATAAACCAGCACCCCCGGTTTCTATAGAT
TACTGGATGTTACCGAAAGATTCTACTTGGCCTGATGTTTTGAGATATAT
TTATGCTGACGAGACGCACCATCGGGATATCAATCATACATTTGCTGATC
TAAGTGTGACGGATTCGAACCCACTTTTACGTGAACATAAAGAGAATTAT
GAGAGGAGTTTAAGTATTGAATCGAATAAGGAAGTATCTCACTGTCCaaa
cgaagaaaaataaacaaaaaaggatGCGAGGGCAAGATATCTTTAAATTT
ACACCGTTAACAATGTACATATACATGCGCATATCAAATcgtaccttatc
gggggaaaaaatgtcgcgggaaagtgacgaaaatgcctctaggtgcagct
aggtgacgaaatttttccccgacgaaaaaaaacccgactaaataaaactc
cgacatttttttcccagaTAAGGTATATCATTACTAAATTTATTTATGCT
TGATTATGGTTGGTTGATAGACTATTTTAATCCTTTACATtccaataaat
gaaaaaatcgaaTGTAATCTCCTTAAATCGAATGATTACCGATTCCGAAG
TTTATGTATTATAAGTTTATGTATTATATAAAATTGATGTATTATAAATT
TATGTATTATAATTTTTAGCTATTTTCATTCTATACACGAAAAAGCACAA
AATACTTTTTGCCTACAAATCATGAAATACATACCTtaaatttattattt
tggactttttttgtaATTGATTATATTTTTAGGATATTTACTACTTAGCA
TTTGAATGTTGTGTCTAATTATTTATTTCCACGCACCAATATTACCTTAT
TGGTACTAGttttagcgggaactaattttagcggtcgaaaaaaaatatcc
gaaaagttgcatttcgcgggttttaattttcgcggttttttcattctgga
attttcgcgggttttaattttcacgattttgccctattttggacaatttt
ttttcattttcctatggatttttcaaatttttcgataaaattggaaaaaa
ttgtgtttcgtgggaattaattttcgcggtttttaactctcaaaattttt
cgcgggttcaaattttgacgaaaaaccgcgaaaaacgctaaaattaattc
ccgcgaaaattagttccaataaggtaatcAAACCTTTTAGGTTTTTTTCT
AGAAATGGGTAGTGCCTGGAAAATTTGTCGAAGGGGAGAAAGTGACCAAC
CGGATGTGTGACACAGGTGTGTAGCAAGATATCACTGCATATCACATTAT
TTCTGCGCTGTAACAGGCTCATTAAacaactttctttttaatttatatat
gcaaaatatatataatttttttttttaatatttatttaaataaagatttt
taaatagaTTTTGAAATCCCCGGTAGAATATAAGTATTCTTCTTCATTTg
tcgaaatttttcgaaattgtacacgctttttttttataaaaatgaatatt
cttaacttttttgggaagatcatcctaaaatattcttacagcattcttag
gttaggatcctaattcagactagatttaacatttagtacattacgtctca
agcataaaatggcatttttgtgaaggagtgagccttacttgggggtaatt
ggcaatttataattgaaaatgctctaaaaatggcattcttagcttgagta
gccaaattccatgaaggtgatattcttagctttttggccattttcatcat
ggacattcttataaagtgtattcttataaaaaaaaagcctGTATTTTTTC
CCAAAGGTTATAGTGctctgaattttcttttaacAGTTCATAATCTGTTG
GTATTGAAGCATTGGTTAAAAAATGACaagcaaaaagaaagaataaGCGC
AGATTAGTTTGCAGTTAAAGCGAAAATCTTATTCAATTCTGTAATTCGAT
TGGTTCTTTTTTTAGTTGCAAGTAATTTTGATTGgctctttttttagttt
tagattCATTATgattatttataaaaatatttcatattatGATGGAGATA
ATACAAAT Run BLAST on NCBI protein sequence of TCONS_00009634-protein >TCONS_00009634-protein ID=TCONS_00009634-protein|Name=TCONS_00009634-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
MSIFLRNKLRTFVGATSGLFAYGMYRPDCDRLVKQPLETNAKSDHHAYTL
RNRVWTEQELIEKYKTCKNHVEPSKTSDYVMYGTLRFAYNAFNAVTFFDK
DDPTPESMRTRLILLESIAGVPPFIMAGYRHFRSLRNLSYDGGRIYTHLE
EAENERMHLVTCMQIFEAGALMKGSVFLAQMVATPICWFLCLLKPQWLNR
GVGYLEELACETYSLVLTHCHNPEKKLYKAWHDKPAPPVSIDYWMLPKDS
TWPDVLRYIYADETHHRDINHTFADLSVTDSNPLLREHKENYERSLSIES
NKEVSHCPNEEK Run BLAST on NCBI transcript from alignment at sc0000097:448780..451906- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009634 ID=TCONS_00009634|Name=TCONS_00009634|organism=Clytia hemisphaerica|type=transcript|length=3127bp|location=Sequence derived from alignment at sc0000097:448780..451906- (Clytia hemisphaerica)
AGGTCTCCAAATCTCTAAAAACAAAGCCAAATCCAAGTTTCATGTGGTAG
TTTTTCAAGATCTTAGATATTCCTTATAAATTACAAAGATGTCCTCTTCT
AGAACTTCCTGATGTTCATGGTAAAATTTATGGCACCTGCCACGCTCGGT
TTTCGCTCAATGATATCATGGAATGACCTGCCAGTTGATATTAGATTAGC
AGACTCTCTTGAAGAAATTACTTGAGAATTTCACAAAAGAAAATGAAATT
CCATGCAACTGCAGGTTATGCCGTGATTAAAAATCTATTAGGGATTGTTT
AAAACCAACGTGAAATGAAGAAACAAAAAGAAATAATTAACATTTCTCAT
ATCTTATATTTTTAGATTTTTATAAAAATTCAAGAAGAGAAAGATGAGCA
TATTTTTACGAAACAAATTGCGTACCTTTGTGGGTGCCACTTCTGGTCTC
TTCGCTTACGGTATGTACCGCCCTGATTGCGACCGCCTCGTCAAACAACC
ATTGGAAACAAACGCCAAATCTGATCACCACGCTTACACGTTACGTAACC
GCGTCTGGACGGAACAAGAGCTGATAGAGAAATATAAAACATGTAAAAAT
CACGTAGAGCCGTCAAAAACATCAGATTACGTCATGTACGGGACGCTCCG
TTTCGCGTACAATGCATTTAACGCCGTTACTTTTTTTGATAAGGACGATC
CAACTCCTGAGTCTATGAGAACAAGGCTTATTCTGCTGGAGTCAATAGCA
GGCGTACCGCCCTTCATAATGGCTGGTTACCGCCATTTTCGTTCCTTACG
AAATCTCTCTTACGACGGGGGTCGTATATATACTCACCTTGAAGAAGCTG
AGAATGAGAGAATGCATTTAGTGACCTGTATGCAGATCTTCGAAGCAGGT
GCACTTATGAAAGGCTCCGTGTTTTTAGCTCAAATGGTTGCGACACCTAT
ATGCTGGTTTTTATGTCTTCTGAAGCCACAATGGCTGAATCGAGGTGTTG
GCTACTTGGAAGAGCTGGCGTGTGAAACTTATTCGTTAGTATTGACACAT
TGCCATAATCCAGAGAAGAAACTGTATAAAGCATGGCATGATAAACCAGC
ACCCCCGGTTTCTATAGATTACTGGATGTTACCGAAAGATTCTACTTGGC
CTGATGTTTTGAGATATATTTATGCTGACGAGACGCACCATCGGGATATC
AATCATACATTTGCTGATCTAAGTGTGACGGATTCGAACCCACTTTTACG
TGAACATAAAGAGAATTATGAGAGGAGTTTAAGTATTGAATCGAATAAGG
AAGTATCTCACTGTCCAAACGAAGAAAAATAAACAAAAAAGGATGCGAGG
GCAAGATATCTTTAAATTTACACCGTTAACAATGTACATATACATGCGCA
TATCAAATCGTACCTTATCGGGGGAAAAAATGTCGCGGGAAAGTGACGAA
AATGCCTCTAGGTGCAGCTAGGTGACGAAATTTTTCCCCGACGAAAAAAA
ACCCGACTAAATAAAACTCCGACATTTTTTTCCCAGATAAGGTATATCAT
TACTAAATTTATTTATGCTTGATTATGGTTGGTTGATAGACTATTTTAAT
CCTTTACATTCCAATAAATGAAAAAATCGAATGTAATCTCCTTAAATCGA
ATGATTACCGATTCCGAAGTTTATGTATTATAAGTTTATGTATTATATAA
AATTGATGTATTATAAATTTATGTATTATAATTTTTAGCTATTTTCATTC
TATACACGAAAAAGCACAAAATACTTTTTGCCTACAAATCATGAAATACA
TACCTTAAATTTATTATTTTGGACTTTTTTTGTAATTGATTATATTTTTA
GGATATTTACTACTTAGCATTTGAATGTTGTGTCTAATTATTTATTTCCA
CGCACCAATATTACCTTATTGGTACTAGTTTTAGCGGGAACTAATTTTAG
CGGTCGAAAAAAAATATCCGAAAAGTTGCATTTCGCGGGTTTTAATTTTC
GCGGTTTTTTCATTCTGGAATTTTCGCGGGTTTTAATTTTCACGATTTTG
CCCTATTTTGGACAATTTTTTTTCATTTTCCTATGGATTTTTCAAATTTT
TCGATAAAATTGGAAAAAATTGTGTTTCGTGGGAATTAATTTTCGCGGTT
TTTAACTCTCAAAATTTTTCGCGGGTTCAAATTTTGACGAAAAACCGCGA
AAAACGCTAAAATTAATTCCCGCGAAAATTAGTTCCAATAAGGTAATCAA
ACCTTTTAGGTTTTTTTCTAGAAATGGGTAGTGCCTGGAAAATTTGTCGA
AGGGGAGAAAGTGACCAACCGGATGTGTGACACAGGTGTGTAGCAAGATA
TCACTGCATATCACATTATTTCTGCGCTGTAACAGGCTCATTAAACAACT
TTCTTTTTAATTTATATATGCAAAATATATATAATTTTTTTTTTTAATAT
TTATTTAAATAAAGATTTTTAAATAGATTTTGAAATCCCCGGTAGAATAT
AAGTATTCTTCTTCATTTGTCGAAATTTTTCGAAATTGTACACGCTTTTT
TTTTATAAAAATGAATATTCTTAACTTTTTTGGGAAGATCATCCTAAAAT
ATTCTTACAGCATTCTTAGGTTAGGATCCTAATTCAGACTAGATTTAACA
TTTAGTACATTACGTCTCAAGCATAAAATGGCATTTTTGTGAAGGAGTGA
GCCTTACTTGGGGGTAATTGGCAATTTATAATTGAAAATGCTCTAAAAAT
GGCATTCTTAGCTTGAGTAGCCAAATTCCATGAAGGTGATATTCTTAGCT
TTTTGGCCATTTTCATCATGGACATTCTTATAAAGTGTATTCTTATAAAA
AAAAAGCCTGTATTTTTTCCCAAAGGTTATAGTGCTCTGAATTTTCTTTT
AACAGTTCATAATCTGTTGGTATTGAAGCATTGGTTAAAAAATGACAAGC
AAAAAGAAAGAATAAGCGCAGATTAGTTTGCAGTTAAAGCGAAAATCTTA
TTCAATTCTGTAATTCGATTGGTTCTTTTTTTAGTTGCAAGTAATTTTGA
TTGGCTCTTTTTTTAGTTTTAGATTCATTATGATTATTTATAAAAATATT
TCATATTATGATGGAGATAATACAAAT Coding sequence (CDS) from alignment at sc0000097:448780..451906- >TCONS_00009634 ID=TCONS_00009634|Name=TCONS_00009634|organism=Clytia hemisphaerica|type=CDS|length=939bp|location=Sequence derived from alignment at sc0000097:448780..451906- (Clytia hemisphaerica)
ATGAGCATATTTTTACGAAACAAATTGCGTACCTTTGTGGGTGCCACTTC
TGGTCTCTTCGCTTACGGTATGTACCGCCCTGATTGCGACCGCCTCGTCA
AACAACCATTGGAAACAAACGCCAAATCTGATCACCACGCTTACACGTTA
CGTAACCGCGTCTGGACGGAACAAGAGCTGATAGAGAAATATAAAACATG
TAAAAATCACGTAGAGCCGTCAAAAACATCAGATTACGTCATGTACGGGA
CGCTCCGTTTCGCGTACAATGCATTTAACGCCGTTACTTTTTTTGATAAG
GACGATCCAACTCCTGAGTCTATGAGAACAAGGCTTATTCTGCTGGAGTC
AATAGCAGGCGTACCGCCCTTCATAATGGCTGGTTACCGCCATTTTCGTT
CCTTACGAAATCTCTCTTACGACGGGGGTCGTATATATACTCACCTTGAA
GAAGCTGAGAATGAGAGAATGCATTTAGTGACCTGTATGCAGATCTTCGA
AGCAGGTGCACTTATGAAAGGCTCCGTGTTTTTAGCTCAAATGGTTGCGA
CACCTATATGCTGGTTTTTATGTCTTCTGAAGCCACAATGGCTGAATCGA
GGTGTTGGCTACTTGGAAGAGCTGGCGTGTGAAACTTATTCGTTAGTATT
GACACATTGCCATAATCCAGAGAAGAAACTGTATAAAGCATGGCATGATA
AACCAGCACCCCCGGTTTCTATAGATTACTGGATGTTACCGAAAGATTCT
ACTTGGCCTGATGTTTTGAGATATATTTATGCTGACGAGACGCACCATCG
GGATATCAATCATACATTTGCTGATCTAAGTGTGACGGATTCGAACCCAC
TTTTACGTGAACATAAAGAGAATTATGAGAGGAGTTTAAGTATTGAATCG
AATAAGGAAGTATCTCACTGTCCAAACGAAGAAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009634-exon-sc0000097-1575043694:451861..451906 | TCONS_00009634-exon-sc0000097-1575043694:451861..451906 | Clytia hemisphaerica | exon |
| TCONS_00009634-exon-sc0000097-1575043694:448780..451541 | TCONS_00009634-exon-sc0000097-1575043694:448780..451541 | Clytia hemisphaerica | exon |
| TCONS_00009634-exon-sc0000097-1510915933:451861..451906 | TCONS_00009634-exon-sc0000097-1510915933:451861..451906 | Clytia hemisphaerica | exon |
| TCONS_00009634-exon-sc0000097-1510915933:448780..451541 | TCONS_00009634-exon-sc0000097-1510915933:448780..451541 | Clytia hemisphaerica | exon |
| TCONS_00009634-exon-sc0000097-1491911889:451861..451906 | TCONS_00009634-exon-sc0000097-1491911889:451861..451906 | Clytia hemisphaerica | exon |
| TCONS_00009634-exon-sc0000097-1491911889:448780..451541 | TCONS_00009634-exon-sc0000097-1491911889:448780..451541 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000097 | supercontig | sc0000097:448780..451906 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002680 | AOX |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0009916 | alternative oxidase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0009916 |
alternative oxidase activity |
Blast
The following BLAST results are available for this feature:
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