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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009631 ID=TCONS_00009631|Name=TCONS_00009631|organism=Clytia hemisphaerica|type=transcript|length=2043bpRun BLAST on NCBI protein sequence of TCONS_00009631-protein >TCONS_00009631-protein ID=TCONS_00009631-protein|Name=TCONS_00009631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=622bp MESSTLVILLACIVCAAARYEVNLLNALEVDESRSGVQSIDGRYRAYQFYRun BLAST on NCBI transcript from alignment at sc0000097:233709..248140- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009631 ID=TCONS_00009631|Name=TCONS_00009631|organism=Clytia hemisphaerica|type=transcript|length=14432bp|location=Sequence derived from alignment at sc0000097:233709..248140- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000097:233709..248140- >TCONS_00009631 ID=TCONS_00009631|Name=TCONS_00009631|organism=Clytia hemisphaerica|type=CDS|length=22392bp|location=Sequence derived from alignment at sc0000097:233709..248140- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009631 vs. Swiss-Prot (Human)
Match: TSP1 (Thrombospondin-1 OS=Homo sapiens GN=THBS1 PE=1 SV=2) HSP 1 Score: 226.098 bits (575), Expect = 3.556e-62 Identity = 184/322 (57.14%), Postives = 218/322 (67.70%), Query Frame = 3
Query: 1101 CTVGK--CASDANCNELGN---GRHECECKTGFAGNGELCAKDTDKDGIPDNEIQCEGK---KCRKDNCPTFPNSGQXXXXXXXXXXXXXXXXXXXXXXXXXXXCPFVANPNQNDADGDRKGDACDNCPNTPNNDQRDSDEDGNGDACSRDSDGDGIRDKSDNCPRVSNIDQLDEDGDSVGDACDNCKTKYNPTQEDTDKDGVGDVCDSXXXXXXXXXXXXXXXCPYVPNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCRIIPNPDQKDSDSNGIGDACDPDFDGDGKTK-GDVCPENPNIQNTDFNNYVHIMLDPIGSS 2039
CT G C +A CN LG+ + CECK G+AGNG +C +DTD DG P+ + C C+KDNCP PNSGQED DKDG GDACD+DDDND I D+ DNCPF NP Q D D D GD CDNCP N DQ D+D +G GDAC+ D DGDGI ++ DNC V N+DQ D D D VGD CDNC ++NP Q D+D D +GD CD+ D+D+DG Q++ DNCPYVPNA+Q D D DG GDACD DDDND I D DNCR++PNPDQKDSD +G GDAC DFD D D+CPEN +I TDF + I LDP G+S
Sbjct: 650 CTDGTHDCNKNAKCNYLGHYSDPMYRCECKPGYAGNGIICGEDTDLDGWPNENLVCVANATYHCKKDNCPNLPNSGQEDYDKDGIGDACDDDDDNDKIPDDRDNCPFHYNPAQYDYDRDDVGDRCDNCPYNHNPDQADTDNNGEGDACAADIDGDGILNERDNCQYVYNVDQRDTDMDGVGDQCDNCPLEHNPDQLDSDSDRIGDTCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDACDHDDDNDGIPDDKDNCRLVPNPDQKDSDGDGRGDACKDDFDHDSVPDIDDICPENVDISETDFRRFQMIPLDPKGTS 971 The following BLAST results are available for this feature:
BLAST of TCONS_00009631 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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