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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009625 ID=TCONS_00009625|Name=TCONS_00009625|organism=Clytia hemisphaerica|type=transcript|length=1444bp GGACATATTAAGTTTCCTTGAAAAGTCAACAAAAATCTGCATATTCAACC TTTTTAGCAAACCGTTGTTATTTTATGGATACAGCAAAAACTTTGATACA GTTTCATAGTGGGAAGAGttaaaagagagagagagaaataGGGAACTGAT AAGAGAATaaactttggaaaataaaatcAGTTAAATTATTGGGTCATCAG ATTCAGAAGTCAAGATGGCTGACCGCCATGGCCTAGTAATGATTCTTTTG CTTTTTTGCGTTTATTTGGTGATGGTTGAAGCGCAGTTTAAGAATTGCTa caGCCGTTCCCCTATGCAGTTTACAACAAATATTCCCTCACGTTTACGAC AAAATCCATTCCATTTGGTTGCTAAGGGAACGGTGAAGTCTCCAATCAAA GGCCCTTTCACTATCGCTGTTGACGTACGAAAAGAATGGTTTCCAGGCTT TTGGAGTAAAATTCCGTGTGTTCATCTCGGGTATAAATCCTGTAGATACG AATTGAAGCAAAATGACATTGAGAAGTTCTGGGACATGAAGAAACATCAG ATCACCCTTTTCGATAAGGATatcgatttgaaagattttcctcGTGATCT ACTTAAGGGTCGGTACAAGGTTGTCGGTACAATCTGGAAGTTAAAACCAC GCAAGAAAATGTTGGGTTGCGTTCGAGGTTATTTCTCTCTCGATGTTACT GCCTGAGCATGTACATGCTTGTGATTCAGCATCaagaatctttctttttt gtgaaatataattctttcATTATAgcttcagaattttttttttcagaaaa aattacgTTATATTTCGTCAACATACCCTTCAAGTAggcacttcagtcac gtgactaaaaatcgtCACGAAGGTTTAGCGGGAAGCGTTCTTTTATAAAG ACgggattttgtattttttcaaatacattcttttatcaaaatatggtagg gtttttttaaatgactgcTTCCTAAAGACGAAATGATGTCAACATCCAAG TTTAGGGGGCCCTTTAGGGGGTTTTTACTTTAGATTTATAAAATCCGAAg tgctagatgtcgtgcttcaagccatcacaggcaaaaaaaaattgaatatc gcagaaaatattgttgctatttttttcgaaaagccGTGAAGCTTCTGATT AGTCAagcactgaaattctattgtaatgtcacgtgacctaggtaggattt catacctaaccacggcacacttttcagccaaaccACGACATCAGCCCTTC GGTCTTTAAAAATCCATGGTTTTTACCATTTGTTAAGGAATATATCATTC TATATGTCAATTTTTGATGCTAAATTGGTGatagatttttggaaaaacat ttaaaaaaagtgattttACTAAATCTAAAACTAAAATCCAAAGTCAACTT TTTACGAAGTAAAGACTCTTCTGCTGTGATGTGAACCTTCCTAT Run BLAST on NCBI protein sequence of TCONS_00009625-protein >TCONS_00009625-protein ID=TCONS_00009625-protein|Name=TCONS_00009625-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
MADRHGLVMILLLFCVYLVMVEAQFKNCYSRSPMQFTTNIPSRLRQNPFH LVAKGTVKSPIKGPFTIAVDVRKEWFPGFWSKIPCVHLGYKSCRYELKQN DIEKFWDMKKHQITLFDKDIDLKDFPRDLLKGRYKVVGTIWKLKPRKKML GCVRGYFSLDVTA Run BLAST on NCBI transcript from alignment at sc0000097:191862..196734- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009625 ID=TCONS_00009625|Name=TCONS_00009625|organism=Clytia hemisphaerica|type=transcript|length=4873bp|location=Sequence derived from alignment at sc0000097:191862..196734- (Clytia hemisphaerica) GGACATATTAAGTTTCCTTGAAAAGTCAACAAAAATCTGCATATTCAACC
TTTTTAGCAAACCGTTGTTATTTTATGGATACAGCAAAAACTTTGATACA
GTTTCATAGTGGGAAGAGTTAAAAGAGAGAGAGAGAAATAGGGAACTGAT
AAGAGAATAAACTTTGGAAAATAAAATCAGTTAAATTATTGGGTCATCAG
ATTCAGAAGTCAAGATGGCTGACCGCCATGGCCTAGTAATGATTCTTTTG
CTTTTTTGCGTTTATTTGGTGATGGTTGAAGCGCAGTTTAAGAATTGCTG
TAAGTTTACAATCGTCCCAAGAGGTCAAATAAGGATGCACCCTTATAACT
ACTTTACACTAGCAAAGTTAATGTACTAGCATGATAATACGATTATTGTT
ACGGGATTTAGTTTGTATAAACTAAAATTGTTCCCTCCATTACTCATTGC
TTTATTTCTACTATGTCTGAATCAGTCGGCTAGCTTGCTAGACTACTATA
CCTATACACCTTTTCGACTGTAGCCGCCAATTACCGTGCAGGTATTTTTT
TGTCTGTTTTACCACCCTTAAACCGTCCTAGTATTTCTTTGCACCTAAAG
ACAATAGAAAAAAGTGTAAAAAAAGGATCGGATCGAGTTTAGGGTGGCAT
GCAGTAGTGGCACGCGCCTGACCGTGCGACTACAGTCGAAAAGGTGTATT
CTTTTCATGGAAGGTCATGTGATGAACTGCAGTGGAGTCTCCATAAGTCG
AACTTCTATTACTCGAAAGAAACGCAGTCCAGTTTTGATATTTTTACTAG
ACAATAATAACCACATCATCTTCTAAGGTTGACCTTCCGTCTTATATTTC
TTTTTTTCCAGACAGCCGTTCCCCTATGCAGTTTACAACAAATATTCCCT
CACGTTTACGACAAAATCCATTCCATTTGGTTGCTAAGGGAACGGTGAAG
TCTCCAATCAAAGGCCCTTTCACTATCGCTGTTGACGTACGAAAAGAATG
GTTTCCAGGCTTTTGGAGTAAAATTCCGTGTGTTCATCTCGGGTATAAAT
CCTGGTAAGTAGTCTTTGTACATCCCTGTAAAGATTTTGTGGTGAAAAGT
GACATTTTTCGAATGATAGAAGTTTGAATTAGTGCGAGAGTGCGCTGTTT
ATGACTCTTCCGCTCGAAACTGTTTTTCAAATGAAAAAAACCTTCAGGTC
TGCGTTTTAGACTTTGTTTGTAATACTGTACTCTTTTAGAACTTCTCAAA
GTCAAGGGACCAATCAGATTCGTAAAATTTCGTTAGGTTGACCTTAGCGA
GTTTATGTATTTGCATTTTTGAGGACGGTACAGTGGAGTGACTGAAGCGA
TTTGGAATAACCCAAAGTTCTGACCCGCAAAATCGCAGACGGCAAAAGTC
CTGATTTACCATCGTCCTCAGTTGGTCAGGATCTAGTCAAATTAAAACCT
TACCGTCTCCGTNCACCTAAAGACAATAGAAAAAAGTGTAAAAAAAGGAT
CGGATCGAGTTTAGGGTGGCATGCAGTAGTGGCACGCGCCTGACCGTGCG
ACTACAGTCGAAAAGGTGTATTCTTTTCATGGAAGGTCATGTGATGAACT
GCAGTGGAGTCTCCATAAGTCGAACTTCTATTACTCGAAAGAAACGCAGT
CCAGTTTTGATATTTTTACTAGACAATAATAACCACATCATCTTCTAAGG
TTGACCTTCCGTCTTATATTTCTTTTTTTCCAGACAGCCGTTCCCCTATG
CAGTTTACAACAAATATTCCCTCACGTTTACGACAAAGTCCATTCCATTT
GGTTGCTAAGGGAACGGTGAAGTCTCCAATCAAAGGCCCTTTCACTATCG
CTGTTGACGTACGAAAAGAATGGTTTCCAGGCTTTTGGAGTAAAATTCCG
TGTGTTCATCTCGGGTATAAATCCTGGTAAGTAGTCTTTGTATATCCCTG
TAAAAATTTTGTGGTGAAAAGTGACATTTTTCGAATGATAGAAGTTTGAA
TTAGTGCGAGAGTGCACTGTTTATGACTCTTCCGCTCGAAACTGTTTTTC
AAATAAAAAAAACCTTCGGGTCTGCGTTTTAGACTTTGTTTGTAATACTG
TACTCTTTGAGAACTTCTCAAAGTCAAGGGACCAATCAGATTCGTAAAAT
TTCGTTAGGTTGACCTTAGCGAGTTTATGTATTTGCATTTTTGAGGACGG
TACAGTGGAGTGACTGAAGCGATTTGGAATAACCCAAAGTTCTGACCCGC
AAAATCGCAGACGGCAAAAGTCCTGATTTACCATCGTCCTCAGTTGGTCA
GGATCTAGTCAAATTAAAACCTTACCGTCTCCGTCGCAGAAAACACACAT
GCATAAACTCGCTATTTATACTAAAAACAGATGATATATAATTATGATAG
AACCATAGTATTGTTGCCANGGTCTGCGTTTTAGACTTTGTTTGTAATAC
TGTACTCTTTTAGAACTTCTCAAAGTCAAGGGACCAATCAGATTCGTAAA
ATTTCGTTAGGTTGACCTTAGCGAGTTTATGTATTTGCATTTTTGAGGAC
GGTACAGTGGAGTGACTGAAGCGATTTGGAATAACCCAAAGTTCTGACCC
GCAAAATCGCAGACGGCAAAAGTGCTGATTTACCATCGTCCTCAGTTGGT
CAGGATCTAGTCAAATTAAAACCTTACCGTCTCCGTCGCAGAAAACACAC
ATGCATAAACTGGCTATTTATACTAAAAACAGATGATACAATTATGATCA
AACCATAGTATTGTTGCCATCCAACCTTTCCATCTTTAATCAGTAGATAC
GAATTGAAGCAAAATGACATTGAGAAGTTCTGGGACATGAAGAAACATCA
GATCACCCTTTTCGATAAGGATATCGATTTGAAAGATTTTCCTCGTGATC
TACTTAAGGTAAACTTTGACACTTTGCTTTTCTCGATGTGCTATTTAACC
CTTCAAACCCAAGGGGGGGGGCGTACGGGATATCGGTACATCGGTATTGG
CCTTTTTTTAGATCGGTAAATCGGTACTAGAGGAAAAAATTGATCGGTAA
TCGGTATTTTAAGACCATCTCGGTATCGGTGAAAGACCCTTTTTTATGTC
GGTATTTCGGTATTTTTGGTCAACTATCGGTATCGACCACCTCATTGGTA
TCGAAGATCATGAGCCATTGCTCTCCAAAACCAATTTTGGTGGAATAAAT
TTTAAAATCTTAGTCACCATAGAGACTTTGGATGGTGACAAACCCAAGCT
TTATCGTCCACACATACCCAGCACCCATATTTGCCTAAGTACCCCCTCCG
GGAGATAAGTACCTCAAAAATTGGGAAAAATTGATCGGTATCGGTATTTG
AGCGAAAAATTTATCGGTATATCGGTAATTGAGAGAAAAAGTGATCGGTA
TATTGGTATTACGAAGGCCCGTACGCCCCCCACACCCAAGTGACGTGCAT
ACACGTTCTAAATTTGCCAATATACCAAGTCTCAAACTTAAGGATATAAC
TCCTGACCACTTGATTTAAAAAGGCAAAAACGAATGCTTTTTAAAAAAAG
TATAGAAATACCTTTTCAATGGTACCAAAACCATTGTCTAATTCTCAAAC
TACAAGCTTTTATGCTAAGTTAAAATTTTGAAGTAAAAAGAAAAAAAAGT
TAGAAATTTTCACATTTTTCAAAAAATGCTGCGCTCTGGAAAGTTTAATA
ACTTGAATAATCAGATCGTGATTGCCTCTTGTATACCACACTGAAACTCT
AAAGGGAGAGGTGTGAGAACAAACGCTCTGGCGAATATGCGATTCTTTGC
AAAGGAAAATAGGAATGACAACAAAGTTGCGTGAATGTGTTTGAAAATAA
GGCGCCATATCAAGTCAACAAGATTCTTGTTCCAGAATTTTCCACGGGAG
TACTATTTTCCTCCGATAGTTAATTTTCAAGAGTCTTTAGAGGTTTACGG
TGCATGTAAAAAAACTATGAACAACCATTATCAGGTTAGTAAAAGATTAC
ACTGCACTCATATTTTATTTGATTTTACTATTATAGGGTCGGTACAAGGT
TGTCGGTACAATCTGGAAGTTAAAACCACGCAAGAAAATGTTGGGTTGCG
TTCGAGGTTATTTCTCTCTCGATGTTACTGCCTGAGCATGTACATGCTTG
TGATTCAGCATCAAGAATCTTTCTTTTTTGTGAAATATAATTCTTTCATT
ATAGCTTCAGAATTTTTTTTTTCAGAAAAAATTACGTTATATTTCGTCAA
CATACCCTTCAAGTAGGCACTTCAGTCACGTGACTAAAAATCGTCACGAA
GGTTTAGCGGGAAGCGTTCTTTTATAAAGACGGGATTTTGTATTTTTTCA
AATACATTCTTTTATCAAAATATGGTAGGGTTTTTTTAAATGACTGCTTC
CTAAAGACGAAATGATGTCAACATCCAAGTTTAGGGGGCCCTTTAGGGGG
TTTTTACTTTAGATTTATAAAATCCGAAGTGCTAGATGTCGTGCTTCAAG
CCATCACAGGCAAAAAAAAATTGAATATCGCAGAAAATATTGTTGCTATT
TTTTTCGAAAAGCCGTGAAGCTTCTGATTAGTCAAGCACTGAAATTCTAT
TGTAATGTCACGTGACCTAGGTAGGATTTCATACCTAACCACGGCACACT
TTTCAGCCAAACCACGACATCAGCCCTTCGGTCTTTAAAAATCCATGGTT
TTTACCATTTGTTAAGGAATATATCATTCTATATGTCAATTTTTGATGCT
AAATTGGTGATAGATTTTTGGAAAAACATTTAAAAAAAGTGATTTTACTA
AATCTAAAACTAAAATCCAAAGTCAACTTTTTACGAAGTAAAGACTCTTC
TGCTGTGATGTGAACCTTCCTAT Coding sequence (CDS) from alignment at sc0000097:191862..196734- >TCONS_00009625 ID=TCONS_00009625|Name=TCONS_00009625|organism=Clytia hemisphaerica|type=CDS|length=2460bp|location=Sequence derived from alignment at sc0000097:191862..196734- (Clytia hemisphaerica) GGTCGGTACAAGGTTGTCGGTACAATCTGGAAGTTAAAACCACGCAAGAA AATGTTGGGTTGCGTTCGAGGTTATTTCTCTCTCGATGTTACTGCCTGAT AGATACGAATTGAAGCAAAATGACATTGAGAAGTTCTGGGACATGAAGAA ACATCAGATCACCCTTTTCGATAAGGATATCGATTTGAAAGATTTTCCTC GTGATCTACTTAAGGCTTTTGGAGTAAAATTCCGTGTGTTCATCTCGGGT ATAAATCCTGACAGCCGTTCCCCTATGCAGTTTACAACAAATATTCCCTC ACGTTTACGACAAAATCCATTCCATTTGGTTGCTAAGGGAACGGTGAAGT CTCCAATCAAAGGCCCTTTCACTATCGCTGTTGACGTACGAAAAGAATGG TTTCCAGATGGCTGACCGCCATGGCCTAGTAATGATTCTTTTGCTTTTTT GCGTTTATTTGGTGATGGTTGAAGCGCAGTTTAAGAATTGCTGGTCGGTA CAAGGTTGTCGGTACAATCTGGAAGTTAAAACCACGCAAGAAAATGTTGG GTTGCGTTCGAGGTTATTTCTCTCTCGATGTTACTGCCTGATAGATACGA ATTGAAGCAAAATGACATTGAGAAGTTCTGGGACATGAAGAAACATCAGA TCACCCTTTTCGATAAGGATATCGATTTGAAAGATTTTCCTCGTGATCTA CTTAAGGCTTTTGGAGTAAAATTCCGTGTGTTCATCTCGGGTATAAATCC TGACAGCCGTTCCCCTATGCAGTTTACAACAAATATTCCCTCACGTTTAC GACAAAATCCATTCCATTTGGTTGCTAAGGGAACGGTGAAGTCTCCAATC AAAGGCCCTTTCACTATCGCTGTTGACGTACGAAAAGAATGGTTTCCAGA TGGCTGACCGCCATGGCCTAGTAATGATTCTTTTGCTTTTTTGCGTTTAT TTGGTGATGGTTGAAGCGCAGTTTAAGAATTGCTGGTCGGTACAAGGTTG TCGGTACAATCTGGAAGTTAAAACCACGCAAGAAAATGTTGGGTTGCGTT CGAGGTTATTTCTCTCTCGATGTTACTGCCTGATAGATACGAATTGAAGC AAAATGACATTGAGAAGTTCTGGGACATGAAGAAACATCAGATCACCCTT TTCGATAAGGATATCGATTTGAAAGATTTTCCTCGTGATCTACTTAAGGC TTTTGGAGTAAAATTCCGTGTGTTCATCTCGGGTATAAATCCTGACAGCC GTTCCCCTATGCAGTTTACAACAAATATTCCCTCACGTTTACGACAAAAT CCATTCCATTTGGTTGCTAAGGGAACGGTGAAGTCTCCAATCAAAGGCCC TTTCACTATCGCTGTTGACGTACGAAAAGAATGGTTTCCAGATGGCTGAC CGCCATGGCCTAGTAATGATTCTTTTGCTTTTTTGCGTTTATTTGGTGAT GGTTGAAGCGCAGTTTAAGAATTGCTGGTCGGTACAAGGTTGTCGGTACA ATCTGGAAGTTAAAACCACGCAAGAAAATGTTGGGTTGCGTTCGAGGTTA TTTCTCTCTCGATGTTACTGCCTGATAGATACGAATTGAAGCAAAATGAC ATTGAGAAGTTCTGGGACATGAAGAAACATCAGATCACCCTTTTCGATAA GGATATCGATTTGAAAGATTTTCCTCGTGATCTACTTAAGGCTTTTGGAG TAAAATTCCGTGTGTTCATCTCGGGTATAAATCCTGACAGCCGTTCCCCT ATGCAGTTTACAACAAATATTCCCTCACGTTTACGACAAAATCCATTCCA TTTGGTTGCTAAGGGAACGGTGAAGTCTCCAATCAAAGGCCCTTTCACTA TCGCTGTTGACGTACGAAAAGAATGGTTTCCAGATGGCTGACCGCCATGG CCTAGTAATGATTCTTTTGCTTTTTTGCGTTTATTTGGTGATGGTTGAAG CGCAGTTTAAGAATTGCTGGTCGGTACAAGGTTGTCGGTACAATCTGGAA GTTAAAACCACGCAAGAAAATGTTGGGTTGCGTTCGAGGTTATTTCTCTC TCGATGTTACTGCCTGATAGATACGAATTGAAGCAAAATGACATTGAGAA GTTCTGGGACATGAAGAAACATCAGATCACCCTTTTCGATAAGGATATCG ATTTGAAAGATTTTCCTCGTGATCTACTTAAGGCTTTTGGAGTAAAATTC CGTGTGTTCATCTCGGGTATAAATCCTGACAGCCGTTCCCCTATGCAGTT TACAACAAATATTCCCTCACGTTTACGACAAAATCCATTCCATTTGGTTG CTAAGGGAACGGTGAAGTCTCCAATCAAAGGCCCTTTCACTATCGCTGTT GACGTACGAAAAGAATGGTTTCCAGATGGCTGACCGCCATGGCCTAGTAA TGATTCTTTTGCTTTTTTGCGTTTATTTGGTGATGGTTGAAGCGCAGTTT AAGAATTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00009625-exon-sc0000097-1575043694:196436..196734 | TCONS_00009625-exon-sc0000097-1575043694:196436..196734 | Clytia hemisphaerica | exon |
TCONS_00009625-exon-sc0000097-1575043694:195727..195873 | TCONS_00009625-exon-sc0000097-1575043694:195727..195873 | Clytia hemisphaerica | exon |
TCONS_00009625-exon-sc0000097-1575043694:194809..194854 | TCONS_00009625-exon-sc0000097-1575043694:194809..194854 | Clytia hemisphaerica | exon |
TCONS_00009625-exon-sc0000097-1575043694:193827..193941 | TCONS_00009625-exon-sc0000097-1575043694:193827..193941 | Clytia hemisphaerica | exon |
TCONS_00009625-exon-sc0000097-1575043694:191862..192698 | TCONS_00009625-exon-sc0000097-1575043694:191862..192698 | Clytia hemisphaerica | exon |
TCONS_00009625-exon-sc0000097-1510915933:196436..196734 | TCONS_00009625-exon-sc0000097-1510915933:196436..196734 | Clytia hemisphaerica | exon |
TCONS_00009625-exon-sc0000097-1510915933:195727..195873 | TCONS_00009625-exon-sc0000097-1510915933:195727..195873 | Clytia hemisphaerica | exon |
TCONS_00009625-exon-sc0000097-1510915933:194809..194854 | TCONS_00009625-exon-sc0000097-1510915933:194809..194854 | Clytia hemisphaerica | exon |
TCONS_00009625-exon-sc0000097-1510915933:193827..193941 | TCONS_00009625-exon-sc0000097-1510915933:193827..193941 | Clytia hemisphaerica | exon |
TCONS_00009625-exon-sc0000097-1510915933:191862..192698 | TCONS_00009625-exon-sc0000097-1510915933:191862..192698 | Clytia hemisphaerica | exon |
TCONS_00009625-exon-sc0000097-1491911889:196436..196734 | TCONS_00009625-exon-sc0000097-1491911889:196436..196734 | Clytia hemisphaerica | exon |
TCONS_00009625-exon-sc0000097-1491911889:195727..195873 | TCONS_00009625-exon-sc0000097-1491911889:195727..195873 | Clytia hemisphaerica | exon |
TCONS_00009625-exon-sc0000097-1491911889:194809..194854 | TCONS_00009625-exon-sc0000097-1491911889:194809..194854 | Clytia hemisphaerica | exon |
TCONS_00009625-exon-sc0000097-1491911889:193827..193941 | TCONS_00009625-exon-sc0000097-1491911889:193827..193941 | Clytia hemisphaerica | exon |
TCONS_00009625-exon-sc0000097-1491911889:191862..192698 | TCONS_00009625-exon-sc0000097-1491911889:191862..192698 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000097 | supercontig | sc0000097:191862..196734 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR028996 | GM2-AP |
Vocabulary: Biological Process
Term | Definition |
GO:0006689 | ganglioside catabolic process |
Vocabulary: Molecular Function
Term | Definition |
GO:0008047 | enzyme activator activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006689 |
ganglioside catabolic process |
molecular_function |
GO:0008047 |
enzyme activator activity |
Blast
The following BLAST results are available for this feature:
|