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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009616 ID=TCONS_00009616|Name=TCONS_00009616|organism=Clytia hemisphaerica|type=transcript|length=420bp
CGGGTAGAGACAAAGTATTGGCGAAAAAAGTACAAATGATTCGAGCAGAC
GATAGATCTACCAAAGGGATGGATGAAACCGATTTCTCGGACATCTCTAA
AGCCGCTATGAAGCCGTACAATCAAAACAAGCGCTCTGTACAATGGGTCA
AATCAACCATCAAAGCTTACGAGGAGCCTGGCAAAGCATTCAAAACCAAC
AGCTTCGGAGAATGTCACTTCTTAGGTGCTACAAGAAAAGCCAAAGGAAA
GTTTATCCGTATTGCGCATGACACATCCATGGAGGATACTTTCAGTTTGC
TTACTGAACATTGGAAGATTGACGAGCCACAATTGTTAATATCTGTCACA
GGAGGCGCCAAAAGCTTCAATATGGACCCAAGATTGAAACAGCAGTTTGC
ATCTGGTTTAGTTAAGGTAT Run BLAST on NCBI transcript from alignment at sc0000097:100582..102997- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009616 ID=TCONS_00009616|Name=TCONS_00009616|organism=Clytia hemisphaerica|type=transcript|length=2416bp|location=Sequence derived from alignment at sc0000097:100582..102997- (Clytia hemisphaerica)
CGGGTAGAGACAAAGTATTGGCGAAAAAAGTACAAATGATTCGAGCAGAG
TAAGGTTTTTAAATCTTCAGACACCTTTTCTATAAGGATGACTATTCCGG
CGGCCAATTTTTCACCGGCCGGATAACATTACCGCCGGCCGGACGACTAT
TCCGCCGACCGAGGAACTATTTCGACGGCCGAATTTCCGGCGAATTCTGA
CCCGGATCCACACTGATACTTTTCGACCGTAGTCGCGCGACCAGGTGCGT
GCCACTTATTTATTTAAGTATCCCCCTAAACTCGATCCAATCCTTTTTTG
ACACATTTTATTATTGTCTGTAGGTTCGAAAAAAGGACTGCGACGGGTTT
AGTGGGATAAAGCGGTCAACAAAAATGACCGCGCGGAAATTGCCGGCTAC
GGTCGAAAAGGTGCATTGCGATAGGCCTTTTTGTAAATCATTTGGCTGCC
TCGTTTCGAAACCATTACCAAGGTGATTGAATCCTCAAGTGTTACTTTTA
AATAGAGTAAACTTCTTATAAACTCCTCTGGGAATCGATTACTATAGCCA
TATTTTGAAAACGAGGTAAGCGTTACTGGTACGTCACCTTCCTTTGAAAT
CATTTGAGATCCGTTACAACTTTGACGTAACTTATTCTCTACCTGACACA
ACTTTGACGTCACTTATTCTCTACCTGACACAACTTTGACGTCACTTATT
CTCTACCTGACACAACTTTGACACAGATACGCGATTAAATGTAAAAATTA
CCGCTAGGTTTTTAAAAATGAACCACTCAAAAGCAAAGAAATCGCTGAAT
AGATTCAACCTTTAATAAAAAATACGGCGCACATTTTTAAGGCTTCATTT
TTTTGGCTGAGAAAGGTTAAAGATTCACTTCTAGCCCTTCGGGCTTATAT
TTCCTTGGCTGTCAATTACTATTTTTGCTAAACTTTTGCTGATTCGTGAA
ATTTTTCAAAATGTCGAATCTCGAAAACAAATTCAAAAATGTTTCCGATA
CTGATTAATTGGATTAAAGTTACCTGACCTTACTAGTAGACGTGCAGTAA
TTATGAATTCCTGGTTATATATAACACGAAGACTTTTTATCATAGCTTTT
TACCATTTGCCTTAAAGTGACTGAATTAACCGAAGGAATCTTTAGAAAGA
GCAGGAAAATACTTTCTAATAATAAAGACATTCTAATAATAAAGACATCC
ATTCATTTTTAATTTCCCAGCGATAGATCTACCAAAGGGATGGATGAAAC
CGATTTCTCGGACATCTCTAAAGCCGCTATGAAGCCGTACAATCAAAACA
AGCGCTCTGTACAATGGGTCAAATCAACCATCAAAGCTTACGAGGAGCCT
GGCAAAGCATTCAAAACCAACAGCTTCGGAGAATGTCACTTCTTAGGTGC
TACAAGAAAAGCCAAAGGAAAGGTAACTGATATTACTGCAAGAATAAGTA
TACCAGGATAATCGCAACGACGGATGAAAATTATAATTAGCTAGTCAAAA
TACAAGCTTTGATTGGGTGAAGCTCACTAGCCTGTTGCCGTGATTGTACC
GATTTACTTAACCTAACTATTGTTATGATATCTTACCAACTTTTTCTTTT
CGAGTAGCAAAGCGATGGCATTTTATTACTGCCTTTTTTGTCTCAGCTAC
AGATTATATTGAGACAGACTTGAATACTATTACAGTTGATGCTCTCTAAT
TCGACGTTCTACTATTCGATACGCTCCCTTATTCGATGAAATTTAAAGTC
CCCGTCAACAAGAAACTCTCATTAACGACGCTCCCTTACTCGATAAGATC
TCTTTTTCGATGAAAATCCAATTCCCCTTGAAGATCGAATTAGAGAGCGT
CAACTGTAGTTACATGGTCTCTTCTTTTCTCGGCTAGCCTCGCCACCAAT
ACGGTTTTTACTGACCCTGTGTATATCCCCTATCCCACCTCGAGACGACC
GTGCAACGGATTTATCCCGTTGAAGTCCCTTTGCATGATTTCAAAAAGCA
CGAACAAAAAGCAGCTACTTACTACTTACTACAATAAAGAGCAAACTGTA
AAAGCGGGATATGCGAAAGTGACATTTTATAGCATCACAATTGAAAGTTT
TGCTTATAATCCATATCAACCCAAGAATAAACAAAATCAAAATATATCCC
AGCTCCACGTGATGTCTTTTGACCAATGGAATCGCGAGAATCTAGAAAGG
TCTTCAAAACACTTTACGATATTTGATGTTTTCTTTCCACCGTACAGTTT
ATCCGTATTGCGCATGACACATCCATGGAGGATACTTTCAGTTTGCTTAC
TGAACATTGGAAGATTGACGAGCCACAATTGTTAATATCTGTCACAGGAG
GCGCCAAAAGCTTCAATATGGACCCAAGATTGAAACAGCAGTTTGCATCT
GGTTTAGTTAAGGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009616-exon-sc0000097-1575043694:102949..102997 | TCONS_00009616-exon-sc0000097-1575043694:102949..102997 | Clytia hemisphaerica | exon |
| TCONS_00009616-exon-sc0000097-1575043694:101576..101777 | TCONS_00009616-exon-sc0000097-1575043694:101576..101777 | Clytia hemisphaerica | exon |
| TCONS_00009616-exon-sc0000097-1575043694:100582..100750 | TCONS_00009616-exon-sc0000097-1575043694:100582..100750 | Clytia hemisphaerica | exon |
| TCONS_00009616-exon-sc0000097-1510915933:102949..102997 | TCONS_00009616-exon-sc0000097-1510915933:102949..102997 | Clytia hemisphaerica | exon |
| TCONS_00009616-exon-sc0000097-1510915933:101576..101777 | TCONS_00009616-exon-sc0000097-1510915933:101576..101777 | Clytia hemisphaerica | exon |
| TCONS_00009616-exon-sc0000097-1510915933:100582..100750 | TCONS_00009616-exon-sc0000097-1510915933:100582..100750 | Clytia hemisphaerica | exon |
| TCONS_00009616-exon-sc0000097-1491911889:102949..102997 | TCONS_00009616-exon-sc0000097-1491911889:102949..102997 | Clytia hemisphaerica | exon |
| TCONS_00009616-exon-sc0000097-1491911889:101576..101777 | TCONS_00009616-exon-sc0000097-1491911889:101576..101777 | Clytia hemisphaerica | exon |
| TCONS_00009616-exon-sc0000097-1491911889:100582..100750 | TCONS_00009616-exon-sc0000097-1491911889:100582..100750 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000097 | supercontig | sc0000097:100582..102997 - |
Blast
BLAST of TCONS_00009616 vs. Swiss-Prot (Human)
Match: TRPM2 (Transient receptor potential cation channel subfamily M member 2 OS=Homo sapiens GN=TRPM2 PE=1 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 2.646e-19 Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = 3
Query: 195 TNSFGECHFLGATRKAKGKFIRIAHDTSMEDTFSLLTEHWKIDEPQLLISVTGGAKSFNMDPRLKQQFASGLVKV 419
T++FG+ F G ++K K K++R++ DT + L+T+HW +D P LLISVTGGAK+FNM PRLK F GLVKV
Sbjct: 124 TDAFGDIVFTGLSQKVK-KYVRVSQDTPSSVIYHLMTQHWGLDVPNLLISVTGGAKNFNMKPRLKSIFRRGLVKV 197
The following BLAST results are available for this feature:
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