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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009615 ID=TCONS_00009615|Name=TCONS_00009615|organism=Clytia hemisphaerica|type=transcript|length=3955bpRun BLAST on NCBI protein sequence of TCONS_00009615-protein >TCONS_00009615-protein ID=TCONS_00009615-protein|Name=TCONS_00009615-protein|organism=Clytia hemisphaerica|type=polypeptide|length=804bp MGGSSDLDEAILTALLNTTEPERQLNLTLLWDRADLAENKILSQIGRRWTRun BLAST on NCBI transcript from alignment at sc0000097:81052..98889- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009615 ID=TCONS_00009615|Name=TCONS_00009615|organism=Clytia hemisphaerica|type=transcript|length=17838bp|location=Sequence derived from alignment at sc0000097:81052..98889- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000097:81052..98889- >TCONS_00009615 ID=TCONS_00009615|Name=TCONS_00009615|organism=Clytia hemisphaerica|type=CDS|length=33810bp|location=Sequence derived from alignment at sc0000097:81052..98889- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009615 vs. Swiss-Prot (Human)
Match: TRPM3 (Transient receptor potential cation channel subfamily M member 3 OS=Homo sapiens GN=TRPM3 PE=2 SV=4) HSP 1 Score: 396.741 bits (1018), Expect = 1.301e-114 Identity = 310/1047 (29.61%), Postives = 531/1047 (50.72%), Query Frame = 2
Query: 131 YNVASSLVEQGAFLDHNHTHFLLVDNGTTGKFGVEIPFRSALEEYIVQEK---------------------------------VPSVLLVLEGGVGTIGTVLGSLK--SGVPAVIIKDSGRAADLLGYGLDTFTEEEIDEICSNFDHQNEALREK----VEQTFPEVNNPRKSAEEIEESFKKAYENVALCLKERKLIHVFEMG--GSSDLDEAILTALL---NTTEPERQLNLTLLWDRADLAENKILSQIGRRWTDDQLHYAMLMALAEDRVDFVRLFLSYGVSVPKVVDQKTLEFLYAYRS-------------EQSTLRFDRRSTNASFTEVTNPLVKRFCQENDVDLRIITMD------------RILMFIDELTSDMRHG---TPMLSSDVSVEND---------PYLHLFLWAVLNGQHQMALYLWEFGEEGLAKSLVAIEINGKLAAKAEKISNLPDEVASDLKDYSAEFRTLSHDLLDKCYRDCESKTLKLITEQSEQFNKRTSIDMAVSMMHLEFVSHSCVQALLNDVWTGYIKDSDITTRDFLLTMLFPPYLTTFDFRTENEMKDMIQMAEDEDSGPPTIQAITMGLPLASKTKXXXXXXXXXXXPDSNGSSMKLVQSKGPQKSYQSTQDTSSPSYSNQDETLSAQRDKELSFCGKMYLFYAKTPAVKFYLNLVSYIVFLCIYAYVAIKEKVPGSTPSVTEYIVLAFVVSFTTEEIHQLVQTEYSTFRAKILDYLSSYWNLVDIVAIITYFTGFALRC----FSSTTHVGHLILALNAGIWILRLLHVFYVHRIMGPYVVMIYRMFIDMMYFLTILFVFMVAYGVCSTAILVP-QKASWKMFIDVIFHPYYNIYGELFIDR--DPEGSQTTRFGTDVIN-SYAEPISWVMXXXXX---XXXXXXXXXXXXXXFGDTFSSVQENSAQIWKYQRYGLILEYAARPALIPPFTLFVHIYLFVRWIWDCCCCKKHD---EEGVVGLTTKLDEYEKEEMNEFESDSVASYVRSVRSQAND--NTTENESVQELLERVKHLT 2980
Y S+ + + L+ H+HF+L DNGTTGK+G E+ R LE++I +K VP V L++EGG I VL L+ VP V+ SGRA+D+L +G ++EE NE+LR++ +++TF R A+ + + + C+K+++LI VF MG G D+D AILTALL N + P+ QL+L L W+R D+A ++I G++W L AML AL DRVDFV+L + GVS+ + + LE LY R ++ L D R + V L+ + N R T+ ++L D++ +R G T +V ++ D P+ L +WAVL + +MAL+ W+ GEE +AK+LVA ++ +A +A + +++ D+++ +L S +F L+ +LLD+ Y+ E +KL+T + + ++ T + +AV+ H +F++H+C Q LL D+W G ++ + +L +L PP + + +F+ +++M M Q E + +E E ++ + M+L G S + +DE + + + K+Y FY P VKF+ ++YI +L ++ Y+ + + PS E+IV++++ + E++ +++ +E K+ +L YWN+ D++AI+ + G LR F S G +I +N W +RLL +F V++ +GPYV+MI +M IDMMYF+ I+ V ++++GV AIL P ++ SWK+ ++ + PY+ IYGE+F D+ P G TR +I + +W++ A+ L+AN+LL+NLLIA+F +TF V+ S Q+WK+QRY LI+ + RP L PP +F H+ + + + CC +KH+ +E GL + + E +++++FE + Y R + +D N++ +E ++ ERV++++
Sbjct: 272 YQTMSNPMSKLTVLNSMHSHFILADNGTTGKYGAEVKLRRQLEKHISLQKINTRCLPFFSLDSRLFYSFWGSCQLDSVGIGQGVPVVALIVEGGPNVISIVLEYLRDTPPVPVVVCDGSGRASDILAFG-HKYSEEG--------GLINESLRDQLLVTIQKTFTYT---RTQAQHL-------FIILMECMKKKELITVFRMGSEGHQDIDLAILTALLKGANASAPD-QLSLALAWNRVDIARSQIFI-YGQQWPVGSLEQAMLDALVLDRVDFVKLLIENGVSMHRFLTISRLEELYNTRHGPSNTLYHLVRDVKKGNLPPDYRISLIDIGLVIEYLMGGAYRCNYTRKRFRTLYHNLFGPKRPKALKLLGMEDDIP--LRRGRKTTKKREEEVDIDLDDPEINHFPFPFHELMVWAVLMKRQKMALFFWQHGEEAMAKALVACKLCKAMAHEASE-NDMVDDISQELNHNSRDFGQLAVELLDQSYKQDEQLAMKLLTYELKNWSNATCLQLAVAAKHRDFIAHTCSQMLLTDMWMGRLRMRKNSGLKVILGILLPPSILSLEFKNKDDMPYMSQAQEIH-------------------LQEKEAEEPEKPTKEKEEEDMELTAMLGRNNGESSRK---------KDEEEVQSKHRLIPLGRKIYEFY-NAPIVKFWFYTLAYIGYLMLFNYIVLVKM--ERWPSTQEWIVISYIFTLGIEKMREILMSEPGKLLQKVKVWLQEYWNVTDLIAILLFSVGMILRLQDQPFRSD---GRVIYCVNIIYWYIRLLDIFGVNKYLGPYVMMIGKMMIDMMYFVIIMLVVLMSFGVARQAILFPNEEPSWKLAKNIFYMPYWMIYGEVFADQIDPPCGQNETREDGKIIQLPPCKTGAWIVPAIMACYLLVANILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTFHERPVLPPPLIIFSHMTMIFQHL--CCRWRKHESDPDERDYGLKLFITDDELKKVHDFEEQCIEEYFR----EKDDRFNSSNDERIRVTSERVENMS 1254 The following BLAST results are available for this feature:
BLAST of TCONS_00009615 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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