TCONS_00009605 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00009605
Unique Name	TCONS_00009605
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1399

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000097:571630..578364+

transcript sequence

>TCONS_00009605 ID=TCONS_00009605|Name=TCONS_00009605|organism=Clytia hemisphaerica|type=transcript|length=1399bp
GTTTTTCCCTGCATTTTAATTACTCAGGGTCTCAATTACAATATTTGAAA
TTATCAAGATTTATAAGTTATGATTATTGATCTCTTATTTCTAAAAGTAT
TCTAAAATAATGTCAAACCTATTAACAAGAATTTGTTGTCGGAACAACAT
TGGAACTCATTTGAATTTTGCAAAACGTTGCTTTTCTGTTGGAGCATGTC
AACGTGGGTTCGAAGAATTTTTTCCACCAGGTGTTTACGAGGGGAAAAAT
TATGTGGAAGAGGAACCGGTCGTCGGACGACGTTGGAAAATCTCTGAACT
GCGTATTCGAAGTAATACTGACTTACATAAATTTTGGTATGTTTTATTAA
AGGAGAAAAACATGTtattgacattagaccaagaaTGTAAAAGACTTGGT
GTTTTCGTTCCAGGACCAACTCGCTTACACAAAGTGGAACAATCTATGGA
CCTTGTTGAGAAGGTAATAAATGAACGTCACCATGCTATCATGAAGTTAG
AAAAGGAGCGAAAAtataaatttgatgaagaagaagaaaatgaggatttg
ttgaatttcaatgataCAGATTCGTTGACCACAGAACAATCTTTTGAAGA
ATCACGTGATAACACTAAAAAGGAGCAAAATGCAAACACTaaattacaaa
atggTGGAAGAATCTAATATTGGATGCGTTGTCAACGTCGACAAATGGCT
GAAGGAAAATGAGGAGAGTTTCAAGCCACCTGTTTGTAACAGCATCATgg
CAGGTGGCTATTTGAAGATCATGTTTGTTGGAGGACCGAACGTTCGAAAG
GATTACCATATGGACCAAGGAGAAGAGTTATTTTACATGTTGAAAGGCGA
TATGTGTTTGAAGATCATGGAGAAGGGCGAACCTAAAGACATCCATATTC
GTGAAGGAGAAGTTTTTGTGTTACCTTCACGTATCCCACACTCGCCGCAA
AGAAACGCAAACACTCTTGGATTGGTCATCGAAAGGGAAAGAGCGGATCA
ATGGGACGGGTTAAGGTATTACTGTGAAGACGGGAAGACGatcttatttc
aaaaatatttccattTGCGCTCGTTGGTTCAAGATTTTCTTCCTGTTATC
AAAGAATATTTTGCGTCGGAGCAATACAAAACTGGTGTCCCTATACCAGG
AACAACAGACGAAGACGAAGAAAAATTCAAAGTCGATCGAACGTCTACCG
TTAATACGCCTTTCCTTTTATCTGAGTGGGTGAAAGAAAACCGAAAAGAG
TTGGATAATCAAGGTAAAGTGTTGTTCGAACAAGGAGAGTTCAAGGTTTA
TGCTAATGGTGAAGGTAACTTTTCACAACAAAACCCTTTTGAATCATGGA
TCTGGTTGATGAATGGTAAATGCAAGTTGCAAATTGATGGTCAAACTGC

Run BLAST on NCBI

transcript from alignment at sc0000097:571630..578364+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00009605 ID=TCONS_00009605|Name=TCONS_00009605|organism=Clytia hemisphaerica|type=transcript|length=6735bp|location=Sequence derived from alignment at sc0000097:571630..578364+ (Clytia hemisphaerica)
GTTTTTCCCTGCATTTTAATTACTCAGGGTCTCAATTACAATATTTGAAA
TTATCAAGATTTATAAGTTATGATTATTGATCTCTTATTTCTAAAAGTAT
TCTAAAATAATGTCAAACCTATTAACAAGAATTTGTTGTCGGAACAACAT
TGGAACTCATTTGAATTTTGCAAAACGTTGCTTTTCTGTTGGAGCATGTC
AACGTGGGTTCGAAGAATTTTTTCCACCAGGTGTTTACGAGGGGAAAAAT
TATGTGGAAGAGGAACCGGTCGTCGGACGACGTTGGAAAATCTCTGAACT
GCGTATTCGAAGTAATACTGACTTACATAAATTTTGGTATGTTTTATTAA
AGGAGAAAAACATGTtattgacattagaccaagaaTGTAAAAGACTTGGT
GTTTTCGTTCCAGGACCAACTCGCTTACACAAAGTGGAACAATCTATGGA
CCTTGTTGAGAAGGTAATAAATGAACGTCACCATGCTATCATGAAGTTAG
AAAAGGAGCGAAAAtataaatttgatgaagaagaagaaaatgaggatttg
ttgaatttcaatgataCAGATTCGTTGACCACAGAACAATCTTTTGAAGA
ATCACGTGATAACACTAAAAAGGAGCAAAATGCAAACACTGTATaaagtt
agatttttttaacatagaaaaataataataaattgAGATGTGAGCAGATG
TGAGTGAATATACTCTTTAGAAAATATCCTGTCTTTAAGTATGTCTCAGG
TCAAATATACCCTTCGCTACTGGCCAATCTTGCTAatgtttttctttatc
tttctgGTTTACTTTCATAAGTGTGAGGTAAAGTCCAAACCAGAACTTGT
TCTGGTCCTTGAATTTACCTATAGTTCAAATAGCTTATTTTAAAGCTTGC
AGATAAGAAAAGTCTGCTGTTAGAAGTCTATGAAAGTAACATTTTATTCC
ACATTTATGAAAGTAACACCAATTGATGTCTTATACTGAGTAATAATAGC
TCAACTTATTATAATTTGAGAGAGCGATACTAGGACTTCTCATTATGTGT
TTATTGTCAAAATAAATGTCATAGAGAAACTTGGAATTCCATTTTATATG
TAACtgttttcaaattaatttcacaacaagtttttttcaatcaatgtcAA
TGGTTCTGCGAATCTCATAATATTAAGCTGGCGAGGTTGAAACTTTGCTC
TCCGTGCGTTTTATGGTTTTGCATTGTTTTGAAAActtctattatttttc
atggGAATTCGATTAATTCCAAACAGAATGATTGCTCATAATATGTAACG
TTTCTTCTTATATTTTATgcatgtcaaaaaaaagaaattacaaaatggTG
GAAGAATCTAATATTGGATGCGTTGTCAACGTCGACAAATGGCTGAAGGA
AAATGAGGAGAGTTTCAAGCCACCTGTTTGTAACAGCATCATGTATGTCC
AGGTTATTTAAAGTCCACTATCATTGTTTGGTCAAGTATTCATCTTTTTG
TCATGCTTgagattttgataaatataatcATAGAGGTCCTGGAtgtaaaa
acactttttaacCCATTATTTTTCCTTGCTACCtttaattgaaaaattgg
aaactGATGCAAAAATCTATTTAGTAAATGTACTATTTTCTAAGAAAAAC
CGAAATCAAAACCAAACAATTTTACGGTCTCGAAATCTCTTTTATCGTAA
AAAGCTGGAAGTTAGAAGCCTGGAAACAACACGTTTTACTTATAAGAATG
TTTTTGCTACTAGCCTTTTCAGATTCTGTTAGATTTGCATGGAACAAGTA
GCAATTACGTCTGGTTTTTTCATAAAGAcagttctttttgttttgaaggg
CAGGTGGCTATTTGAAGATCATGTTTGTTGGAGGACCGAACGTTCGAAAG
GATTACCATATGGACCAAGGAGAAGAGGTACACAATAGATATTCTTTCGG
CCATCTCAATAGTTATCTTTTTCGAAAGAGGGAAGGAGAACTTTGCGACA
TCAATGATATGAACAATTTTAAGGGGTTAAGGTTGAATTATTGTCATCTT
ATCATTCGAACTATTCTATTGTTAGCCGGTTTGGCGGTGACGGGCCTACT
ACACTAAGATATTGAATATTACATAGGCAccattcttcttcatttttatg
acgtcagaaatttatttcatttgttttttctcttttccaCTGTATTTTCG
CGATAaagcattgaaaattgaaagaaactcaAGGAAACATTGAACAAATA
CAATACTAACCGGTTTAGGTCGGGCTCTAATTATTGCCCGAAATCAAATA
AACTACAGAGCATTGATGACCGAATATTTCTTAGTTATTTTACATGTTGA
AAGGCGATATGTGTTTGAAGATCATGGAGAAGGGCGAACCTAAAGACATC
CATATTCGTGAAGGAGAAGTAAGCTCTCTATCAGGTCTTTACTCATCATC
AAGAATTTCTTTAATACATTTTACATTCATAAGAGTATGCATCCCTGCAA
ACTCGAGTGGCTTCTGAAAAGTTAATTTTTACCAAACCATTTAGGTCATA
ACTACTTACCTACTAACCTactttaaattcaaaaagtgAGGAGAATGTAT
TGTAGGTTAAGGGAAACTTGCAACTTTCTAAAAGCTTAAGTTCTGTTCTG
AAGAGATCACTTTATTATTTCAGGTTTTTGTGTTACCTTCACGTATCCCA
CACTCGCCGCAAAGAAACGCAAACACTCTTGGATTGGTATGCTGAAGCAA
TTATTTGGGTTGGAAAATATTGATGAGAGATAGCTTCATAAAATCATGTG
GCCCAAATGAAGAATTTTATCACAAAGTGAAGAATCGAATTGAAAAATAA
CCGAGCGTTTTTTGGGAGATAACTATGAGATTGGTAACCTTGGAGGatag
tttaaaaattttcgattACCTCGAGATAAAAAAGTGGTTGAACAACGTGT
AATCATTACATCTCCTTGAGCACTTTGTGAAGGACTTTAATTTCAAGGCT
TAACGAAATTCAAAGGTTGAATTGTATACCTTCTAAGTGAATACtaattg
aaaatattataaTAATTCTTTACCCCTTTCTATAGGTCATCGAAAGGGAA
AGAGCGGATCAATGGGACGGGTTAAGGTAACAAATATTCAGTTTTGCTTG
TTGTACTGTAGttaacaaaattttgttggtttgtGAGCTGAAGTATTTGG
TCGAATCATGCATTTGCTTTCTGTATTAAATTACACCTACTCTCGCTTGG
AATCTTTTTATAATGCTGCAGTGGTGGAAATAGCGGTCAGTTATTGGTTA
AAACCGACCAGAAATAAAACAACACcgacacaaaaagtttcaaatttaaA
GAAATAACCGATCAATATTTGAGTGATCTATATTAATCCGATACTGTTTG
GTTAATGTTGGTTCAGTTATCTTTTGGAACAACCATTTTCTATCTAGAAT
TTTCATGCGTTTGTATTTGTAAGAaactaatttaaaaattttcaaggtaT
AATTCGTAGAAAGAAGGTTAGAAGAAGTCATTTTCTCTGCTATATGCAAT
GATGCTTatctttccttcgttcaaaagaTTCATAATGAAAATTAATTGAT
GTCATCAAAATGAGACAGTTTTAGCAAATCATGAGCAGggataaattttc
taaattttctatcTCAGCCAAAACCATGGTCGCCCTTCGGGTGACAATAA
ACACGAGCGATCTACTAAAATAACCGATCACAACGGGAAAGCTTATTTCG
CCCACTGAATTGCAAACTTATTTCCAGTCTCCTTTCCAgttactttctgt
aattcgaatctctctgttattcgaacaagTGGAATTCCCCTTTCGagctc
gaattagcgagagtcgacTATATCTCTAAACAATTATCTTTGCGTATTGT
AGGTATTACTGTGAAGACGGGAAGACGatcttatttcaaaaatatttcca
ttTGCGCTCGTTGGTTCAAGATTTTCTTCCTGTTATCAAAGAATATTTTG
CGTCGGAGCAATACAAAACTGGTGTCCCTATACCAGGTACATACCATAAT
GTCAAACTCTAAATGTATAGATTTTCGTAAACatccaaatttcaaaatct
cCCTTAAGGtttaaacaccaaaattaaGTACTCtagggtacctaatagcc
gggggggggggttggaataagaatgtcctggggggaaaatgtttgaaaag
gaggctaatacagcagaattaagacaaaaaagggaactttcaaaaacatt
ttcccagaaattaataagcgggagggggggttggaataagaatgtcctgg
ggggaaaatgtttgaaaaggaggctaatacagcagaattaagacaaaaaa
gggaactttcaaaaacattttcccagaaattaataagcgggagggggggt
tggaataagaatgtcctggggggaaaatgtttgaaaaggaggctaataca
gcagaattaagacaaaaaagggaactttcaaaaacattttcccagaaatt
aataagcgggagggggggttggaataagaatgtcctggggggaaaatgtt
tgaaaaggaggctaatacagcagaattaagacaaaaaagggaactttcaa
aaacattttcccagaaattaataagcgggagggggggttggaataagaat
gtcctggggggaaaatgtttgaaaaggaggctaatacagcagaattaaga
caaaaaagggaactttcaaaaacattttcccagaaattaataagcgggag
ggggggttggaataagaatgtcctgggtggaaaattttcgaaaaattaat
tagcggggggactagacggctattaggtacccgagagtagtttcATGTAA
GTTTAGACTATGTTTTTGTATTCCATTATGACATGTTTACGGGAGATCTT
GAGTTGATGACTGCACTCTTACTCAATTTCATGTTATAAGAGATGAGTTG
TATTGCTGGCCTAGAGTTTTTGTCTAGGTTttaatgttcaatttttcatg
ataGGAACAACAGACGAAGACGAAGAAAAATTCAAAGTCGATCGAACGTC
TACCGTTAATACGCCTTTCCTTTTATCTGAGGTGAGAAGTGAATGTGTTT
CTTATTTCTGCTATACTCCCCGTGTCACGAAACAGGTTGACCACTGTAAA
ATCACTAATTCTCTGATACCCCCCTTGTGTAATTGAGCAGTATACAATCG
AATACAAAAATTCGAACCCTTTAAAAGTAACAAGTGAGCTTTTCCGGTAT
TTTGCTACTTAATTTTATCCCTGTAATTGTAAAAATTGTTCATGAGACAA
AGGTGCCACTATACTAATTCTGTCTCGAgagttttacttttttttattta
ttttatataatCTTCTTTAATCAATCGCTAGTGGGTGAAAGAAAACCGAA
AAGAGTTGGATAATCAAGGTAAAGTGTTGTTCGAACAAGGAGAGTTCAAG
GTATGTGTCTTGAGCATATTAACTCATCGAGCACCCTGTGAGGAGAAGAT
AAAAATCCTCTACGAATTGTTAGGAATATACTTTGCTTTATAACCATACG
GGAAATTTGCGGGCTGAAACTCATCATTCGCTTGCTTAGCAACATTTAAT
TTTCAGCCTCAATTTATGCCTTAACATATGATATGTTcacgaaatttttt
ttaaaacattgtCAAATTTGACTgattttcatcttcactttttACTTTCT
TTATGATTACATCCACTCGATAAAAAGGTGTGTGTACTTGTTGTAATAAG
TATTCTTATACGCTTTTAATTGAAGATCATTGTGCAAAATGCCTTTCAAT
TCAATATATTTATTGTCTACCTCCCTGTCTCATtgattctattttcaaaa
caaaatttgaattatgaaTCTTCGAGCTATGCTATGCTAAGcattgtgtt
tgtttttttctgctaATTTGAGCATCAGTCtgctttttaaaaattatgct
tataaaaaagagagtCTCTTCGTTATATCCCTCGTCTCCTGAAATTTAGC
TTGTCTCTTAAATATGTgactttttatccattttttcaacttattcgCGA
TCAAATCAAAATCTTCCTTTGGAGAAATTTACCACATTaacgttttttga
aattttgtaaacaaaagtttagaaatcgaTCTTCTTACTTTTTTGTTCGC
TTCAGGTTTATGCTAATGGTGAAGGTAACTTTTCACAACAAAACCCTTTT
GAATCATGGATCTGGTTGATGGTAATATATTTTTCCTGTTTGTTGTATTA
CTGTTACTATTCTTAAAACTGTGGGgtacttattttggcgagaacttatt
tcgtcgaatgttcaaactttttaatttcggcgagaactaattttggcgaa
tagcAGGCTCAATCTGtcctattttgccttattttgagcaactttgatga
atttttcGGGTTATTTTGACAAAGTGaaagaaataataataattttggCG
AGAGCTTACTTTGAGTGAGTaagataattaattttttggaaaactaattt
tagcgaatttTGTCTAAGGTCGCCAAATCCCCCAGAATTGGTTCTTACCA
AAATAAGTTTCCTTAATGTATGTAGAGATTCCATGTTCAAATTAGACTTT
TGTATCAACTTTGCCAGTATGTCGAGAATATCTTAACAAGTCACATGGTC
AAGATAATAACATATTACTTAACTTTCCTCTTCTGTCCCATACACAGAAT
GGTAAATGCAAGTTGCAAATTGATGGTCAAACTGC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005361	XLOC_005361	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000097	supercontig	sc0000097:571630..578364 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
45.8356	44.0481	18.0447	14.1871	46.604	34.3952	38.2889	43.1491	23.1513	19.4591	13.8436	13.0395	8.63612	9.85126	13.2638	13.3147	34.1256	26.2366	4.91124	6.26977	18.9964	17.3205	48.986	43.6097	16.897	18.1198	13.8351	9.58236	25.9139	27.505

Blast

[Close]

BLAST of TCONS_00009605 vs. Swiss-Prot (Human)
Match: 3HAO (3-hydroxyanthranilate 3,4-dioxygenase OS=Homo sapiens GN=HAAO PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.478e-65
Identity = 108/243 (44.44%), Postives = 164/243 (67.49%), Query Frame = 3

Query:  681 VNVDKWLKENEESFKPPVCNSIMAGGYLKIMFVGGPNVRKDYHMDQGEELFYMLKGDMCLKIMEKGEPKDIHIREGEVFVLPSRIPHSPQRNANTLGLVIERERAD-QWDGLRYYCEDGKTILFQKYFHLRSLVQDFLPVIKEYFASEQYKTGVPIPGTTDEDEEKFKVDRTSTVNTPFLLSEWVKENRKELDNQGKV-LF-EQGEFKVYANGEGNFS--QQNPFESWIWLMNGKCKLQIDGQ 1394
            + V  W+KEN  SF+PPVCN +M    LK+MF+GGPN RKDYH+++GEE+FY L+GDM L+++E+G+ +D+ IR+GE+F+LP+R+PHSPQR ANT+GLV+ER R + + DGLRYY  D   +LF+K+F+ + L     P+I+E+F+SEQY+TG PIP    + E  F +  T ++  P  L  W+  + +EL     + LF +  E +V A G+G+    +QN  + W+W + G   + + G+
Sbjct:    5 LGVRAWVKENRGSFQPPVCNKLMHQEQLKVMFIGGPNTRKDYHIEEGEEVFYQLEGDMVLRVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFANTVGLVVERRRLETELDGLRYYVGDTMDVLFEKWFYCKDLGTQLAPIIQEFFSSEQYRTGKPIPDQLLK-EPPFPLS-TRSIMEPMSLDAWLDSHHRELQAGTPLSLFGDTYETQVIAYGQGSSEGLRQN-VDVWLWQLEGSSVVTMGGR 244

The following BLAST results are available for this feature:

BLAST of TCONS_00009605 vs. Swiss-Prot (Human)

BLAST of TCONS_00009605 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
3HAO	2.478e-65	44.44	3-hydroxyanthranilate 3,4-dioxygenase OS=Homo sapi...	[more]

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TCONS_00009605 (transcript) - C. hemisphaerica