|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009596 ID=TCONS_00009596|Name=TCONS_00009596|organism=Clytia hemisphaerica|type=transcript|length=1141bp
TAGAGTATGGAATTAAAAACGTAGAAAGGAAATGAAGATCATTTCAGagt
atcaaatttgattttttcttctccaaCAGTGAAACTGTTTTCGAATTATT
TGAGAGAAATTGAGGCAAGATGGCGGTCAATGTATTTGGTAAGTNCTTCT
CCAACAGTGAAACTGTATTCGAATTATTTGAGAGAAATTGAGGCAAGATG
GCGGTCAATGTATTTGGGCTGGATATATTCTTTGGGTGTCTCGGTGGAAG
TTTGGTAATATTATTGATCATTTACATTTGTGCAATCAAATACCTGAAAG
GTGATTTCTCATCAGATAAGGAGAAAGAAGGAGCCTTGCTGGAGGAGGGT
GAAGAAGAATGGTCAGACGATGGAGGGTTTACAACTTCACCATATAAAGG
GTTCTCCCCCAACGATGCTCGAGGTGAAATCCAACAAACTGGTTTTGAAG
GTGGAAAGTTCGTTTCAAAGGCTATCATAGTGGTTTCTCTGCGTTATTTT
CAAGAGAATCGGCGCATCATAGGTGTCGTAAAGGCAGTAGATAATTGGAA
CACTAAAGCGGATGATGCGCCAAAACAAGTAAAATTCGTATGTAAAACAA
TCACAAAGAAACAATATACAGCAAACACTAACTCAAAAGGAACTAAACGA
AATATTCTATCGTTATCGTTTATGTTGGGACCCGTAGTTTATGAGGAAAT
CTTGAACGCTTCACTTTGTATACAACTTCTTGGAAAGCGTAAGCGATTGA
AACAAAAGTGGAAATGCTACGGTGAATGTTATATTGATTTGAACAATATT
GTCGGTAAAAAAGACGCCGTAGAATTCCGTAAAAACATTATGCCTAAAGC
CGTTTACATCAAAGGCTTGAAATCTTCTAATACAGACTCTTCAGATACTG
AAAATGCTTCTTAGTCTGTGGTCTTTAAATAGACTGTTGTAATGTTTAGT
TGTTTTTCATATCTGAATTTTTAAATTACTTATAATTTTAGGTTTagatc
tttaaaatttttactttaaatcttaaattatATCTTTCAAAAATTCACAA
GGTTAAAAATACATtacttaaagtttcatgcttaTCGCAATCATCatact
ttaaatcttaaaataatGTGAAAACGCattaaaaatataga Run BLAST on NCBI transcript from alignment at sc0000097:518167..519721+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009596 ID=TCONS_00009596|Name=TCONS_00009596|organism=Clytia hemisphaerica|type=transcript|length=1555bp|location=Sequence derived from alignment at sc0000097:518167..519721+ (Clytia hemisphaerica)
TAGAGTATGGAATTAAAAACGTAGAAAGGAAATGAAGATCATTTCAGagt
atcaaatttgattttttcttctccaaCAGTGAAACTGTTTTCGAATTATT
TGAGAGAAATTGAGGCAAGATGGCGGTCAATGTATTTGGTAAGTNCTTCT
CCAACAGTGAAACTGTATTCGAATTATTTGAGAGAAATTGAGGCAAGATG
GCGGTCAATGTATTTGGTAAGTGTGTTTAGCTTTTGTTTTGTATTTATTG
AAAGATGAAGTTTACTGGGCCGAGAAACGCGTAATATTAGCCATTAACGT
CGTTTTGGTGATAACGATTCCACTGACCTTCCGAAATGTTTCGTTTGTTT
TTATCGGAAAAGAAAGCCAGAATCATAATAAGGTTTTTTTAGAAGTACGA
AAAATAGCTCGTGTTTAGCTAAACGGACTAATTTTCTAAAGCTGCGTATT
TGACGTACCCCTCCTAGTATAATTCTTGATAGTAcatatcatttttttca
accTTTCACAGGATCTATTCAGGATATTAAAAGCAACACAGAGCAGGATG
AAAAGTCGATATAAATCAACAAACTTCTTACGaataaagtttattttctt
gaatGACTTTACATGTATTTTCCTTTTTAGGGCTGGATATATTCTTTGGG
TGTCTCGGTGGAAGTTTGGTAATATTATTGATCATTTACATTTGTGCAAT
CAAATACCTGAAAGGTGATTTCTCATCAGATAAGGAGAAAGAAGGAGCCT
TGCTGGAGGAGGGTGAAGAAGAATGGTCAGACGATGGAGGGTTTACAACT
TCACCATATAAAGGGTTCTCCCCCAACGATGCTCGAGGTGAAATCCAACA
AACTGGTTTTGAAGGTGGAAAGTTCGTTTCAAAGGCTATCATAGTGGTTT
CTCTGCGTTATTTTCAAGAGAATCGGCGCATCATAGGTGTCGTAAAGGCA
GTAGATAATTGGAACACTAAAGCGGATGATGCGCCAAAACAAGTAAAATT
CGTATGTAAAACAATCACAAAGAAACAATATACAGCAAACACTAACTCAA
AAGGAACTAAACGAAATATTCTATCGTTATCGTTTATGTTGGGACCCGTA
GTTTATGAGGAAATCTTGAACGCTTCACTTTGTATACAACTTCTTGGAAA
GCGTAAGCGATTGAAACAAAAGTGGAAATGCTACGGTGAATGTTATATTG
ATTTGAACAATATTGTCGGTAAAAAAGACGCCGTAGAATTCCGTAAAAAC
ATTATGCCTAAAGCCGTTTACATCAAAGGCTTGAAATCTTCTAATACAGA
CTCTTCAGATACTGAAAATGCTTCTTAGTCTGTGGTCTTTAAATAGACTG
TTGTAATGTTTAGTTGTTTTTCATATCTGAATTTTTAAATTACTTATAAT
TTTAGGTTTagatctttaaaatttttactttaaatcttaaattatATCTT
TCAAAAATTCACAAGGTTAAAAATACATtacttaaagtttcatgcttaTC
GCAATCATCatactttaaatcttaaaataatGTGAAAACGCattaaaaat
ataga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009596-exon-sc0000097-1491911889:518167..518382 | TCONS_00009596-exon-sc0000097-1491911889:518167..518382 | Clytia hemisphaerica | exon |
| TCONS_00009596-exon-sc0000097-1510915933:518167..518382 | TCONS_00009596-exon-sc0000097-1510915933:518167..518382 | Clytia hemisphaerica | exon |
| TCONS_00009596-exon-sc0000097-1575043694:518167..518382 | TCONS_00009596-exon-sc0000097-1575043694:518167..518382 | Clytia hemisphaerica | exon |
| TCONS_00009596-exon-sc0000097-1491911889:518797..519721 | TCONS_00009596-exon-sc0000097-1491911889:518797..519721 | Clytia hemisphaerica | exon |
| TCONS_00009596-exon-sc0000097-1510915933:518797..519721 | TCONS_00009596-exon-sc0000097-1510915933:518797..519721 | Clytia hemisphaerica | exon |
| TCONS_00009596-exon-sc0000097-1575043694:518797..519721 | TCONS_00009596-exon-sc0000097-1575043694:518797..519721 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000097 | supercontig | sc0000097:518167..519721 + |
Blast
The following BLAST results are available for this feature:
|
