TCONS_00009595 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009595
Unique NameTCONS_00009595
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1183

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009595 ID=TCONS_00009595|Name=TCONS_00009595|organism=Clytia hemisphaerica|type=transcript|length=1183bp
CTGTTCTTTTTTGCATTTACAAGTACACTCACTGAcaagctttagaaaaa
atctTACGTAGAGTGACATTAAAAAGCACTTTCTGTGGTagagaaacatt
tttgaagGGTGTAAGCAAGCTAGAGTATGGAATTAAAAACGTAGAAAGGA
AATGAAGATCATTTCAGagtatcaaatttgattttttcttctccaaCAGT
GAAACTGTTTTCGAATTATTTGAGAGAAATTGAGGCAAGATGGCGGTCAA
TGTATTTGGGCTGGATATATTCTTTGGGTGTCTCGGTGGAAGTTTGGTAA
TATTATTGATCATTTACATTTGTGCAATCAAATACCTGAAAGGTGATTTC
TCATCAGATAAGGAGAAAGAAGGAGCCTTGCTGGAGGAGGGTGAAGAAGA
ATGGTCAGACGATGGAGGGTTTACAACTTCACCATATAAAGGGTTCTCCC
CCAACGATGCTCGAGGTGAAATCCAACAAACTGGTTTTGAAGGTGGAAAG
TTCGTTTCAAAGGCTATCATAGTGGTTTCTCTGCGTTATTTTCAAGAGAA
TCGGCGCATCATAGGTGTCGTAAAGGCAGTAGATAATTGGAACACTAAAG
CGGATGATGCGCCAAAACAAGTAAAATTCGTATGTAAAACAATCACAAAG
AAACAATATACAGCAAACACTAACTCAAAAGGAACTAAACGAAATATTCT
ATCGTTATCGTTTATGTTGGGACCCGTAGTTTATGAGGAAATCTTGAACG
CTTCACTTTGTATACAACTTCTTGGAAAGCGTAAGCGATTGAAACAAAAG
TGGAAATGCTACGGTGAATGTTATATTGATTTGAACAATATTGTCGGTAA
AAAAGACGCCGTAGAATTCCGTAAAAACATTATGCCTAAAGCCGTTTACA
TCAAAGGCTTGAAATCTTCTAATACAGACTCTTCAGATACTGAAAATGCT
TCTTAGTCTGTGGTCTTTAAATAGACTGTTGTAATGTTTAGTTGTTTTTC
ATATCTGAATTTTTAAATTACTTATAATTTTAGGTTTagatctttaaaat
ttttactttaaatcttaaattatATCTTTCAAAAATTCACAAGGTTAAAA
ATACATtacttaaagtttcatgcttaTCGCAATCATCatactttaaatct
taaaataatGTGAAAACGCattaaaaatataga
Run BLAST on NCBI

protein sequence of TCONS_00009595-protein

>TCONS_00009595-protein ID=TCONS_00009595-protein|Name=TCONS_00009595-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MAVNVFGLDIFFGCLGGSLVILLIIYICAIKYLKGDFSSDKEKEGALLEE
GEEEWSDDGGFTTSPYKGFSPNDARGEIQQTGFEGGKFVSKAIIVVSLRY
FQENRRIIGVVKAVDNWNTKADDAPKQVKFVCKTITKKQYTANTNSKGTK
RNILSLSFMLGPVVYEEILNASLCIQLLGKRKRLKQKWKCYGECYIDLNN
IVGKKDAVEFRKNIMPKAVYIKGLKSSNTDSSDTENAS
Run BLAST on NCBI

transcript from alignment at sc0000097:518047..519721+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009595 ID=TCONS_00009595|Name=TCONS_00009595|organism=Clytia hemisphaerica|type=transcript|length=1675bp|location=Sequence derived from alignment at sc0000097:518047..519721+ (Clytia hemisphaerica)
CTGTTCTTTTTTGCATTTACAAGTACACTCACTGAcaagctttagaaaaa
atctTACGTAGAGTGACATTAAAAAGCACTTTCTGTGGTagagaaacatt
tttgaagGGTGTAAGCAAGCTAGAGTATGGAATTAAAAACGTAGAAAGGA
AATGAAGATCATTTCAGagtatcaaatttgattttttcttctccaaCAGT
GAAACTGTTTTCGAATTATTTGAGAGAAATTGAGGCAAGATGGCGGTCAA
TGTATTTGGTAAGTNCTTCTCCAACAGTGAAACTGTATTCGAATTATTTG
AGAGAAATTGAGGCAAGATGGCGGTCAATGTATTTGGTAAGTGTGTTTAG
CTTTTGTTTTGTATTTATTGAAAGATGAAGTTTACTGGGCCGAGAAACGC
GTAATATTAGCCATTAACGTCGTTTTGGTGATAACGATTCCACTGACCTT
CCGAAATGTTTCGTTTGTTTTTATCGGAAAAGAAAGCCAGAATCATAATA
AGGTTTTTTTAGAAGTACGAAAAATAGCTCGTGTTTAGCTAAACGGACTA
ATTTTCTAAAGCTGCGTATTTGACGTACCCCTCCTAGTATAATTCTTGAT
AGTAcatatcatttttttcaaccTTTCACAGGATCTATTCAGGATATTAA
AAGCAACACAGAGCAGGATGAAAAGTCGATATAAATCAACAAACTTCTTA
CGaataaagtttattttcttgaatGACTTTACATGTATTTTCCTTTTTAG
GGCTGGATATATTCTTTGGGTGTCTCGGTGGAAGTTTGGTAATATTATTG
ATCATTTACATTTGTGCAATCAAATACCTGAAAGGTGATTTCTCATCAGA
TAAGGAGAAAGAAGGAGCCTTGCTGGAGGAGGGTGAAGAAGAATGGTCAG
ACGATGGAGGGTTTACAACTTCACCATATAAAGGGTTCTCCCCCAACGAT
GCTCGAGGTGAAATCCAACAAACTGGTTTTGAAGGTGGAAAGTTCGTTTC
AAAGGCTATCATAGTGGTTTCTCTGCGTTATTTTCAAGAGAATCGGCGCA
TCATAGGTGTCGTAAAGGCAGTAGATAATTGGAACACTAAAGCGGATGAT
GCGCCAAAACAAGTAAAATTCGTATGTAAAACAATCACAAAGAAACAATA
TACAGCAAACACTAACTCAAAAGGAACTAAACGAAATATTCTATCGTTAT
CGTTTATGTTGGGACCCGTAGTTTATGAGGAAATCTTGAACGCTTCACTT
TGTATACAACTTCTTGGAAAGCGTAAGCGATTGAAACAAAAGTGGAAATG
CTACGGTGAATGTTATATTGATTTGAACAATATTGTCGGTAAAAAAGACG
CCGTAGAATTCCGTAAAAACATTATGCCTAAAGCCGTTTACATCAAAGGC
TTGAAATCTTCTAATACAGACTCTTCAGATACTGAAAATGCTTCTTAGTC
TGTGGTCTTTAAATAGACTGTTGTAATGTTTAGTTGTTTTTCATATCTGA
ATTTTTAAATTACTTATAATTTTAGGTTTagatctttaaaatttttactt
taaatcttaaattatATCTTTCAAAAATTCACAAGGTTAAAAATACATta
cttaaagtttcatgcttaTCGCAATCATCatactttaaatcttaaaataa
tGTGAAAACGCattaaaaatataga

Coding sequence (CDS) from alignment at sc0000097:518047..519721+

>TCONS_00009595 ID=TCONS_00009595|Name=TCONS_00009595|organism=Clytia hemisphaerica|type=CDS|length=1434bp|location=Sequence derived from alignment at sc0000097:518047..519721+ (Clytia hemisphaerica)
ATGGCGGTCAATGTATTTGGGCTGGATATATTCTTTGGGTGTCTCGGTGG
AAGTTTGGTAATATTATTGATCATTTACATTTGTGCAATCAAATACCTGA
AAGGTGATTTCTCATCAGATAAGGAGAAAGAAGGAGCCTTGCTGGAGGAG
GGTGAAGAAGAATGGTCAGACGATGGAGGGTTTACAACTTCACCATATAA
AGGGTTCTCCCCCAACGATGCTCGAGGTGAAATCCAACAAACTGGTTTTG
AAGGTGGAAAGTTCGTTTCAAAGGCTATCATAGTGGTTTCTCTGCGTTAT
TTTCAAGAGAATCGGCGCATCATAGGTGTCGTAAAGGCAGTAGATAATTG
GAACACTAAAGCGGATGATGCGCCAAAACAAGTAAAATTCGTATGTAAAA
CAATCACAAAGAAACAATATACAGCAAACACTAACTCAAAAGGAACTAAA
CGAAATATTCTATCGTTATCGTTTATGTTGGGACCCGTAGTTTATGAGGA
AATCTTGAACGCTTCACTTTGTATACAACTTCTTGGAAAGCGTAAGCGAT
TGAAACAAAAGTGGAAATGCTACGGTGAATGTTATATTGATTTGAACAAT
ATTGTCGGTAAAAAAGACGCCGTAGAATTCCGTAAAAACATTATGCCTAA
AGCCGTTTACATCAAAGGCTTGAAATCTTCTAATACAGACTCTTCAGATA
CTGAAAATGCTTCTTAGATGGCGGTCAATGTATTTGGGCTGGATATATTC
TTTGGGTGTCTCGGTGGAAGTTTGGTAATATTATTGATCATTTACATTTG
TGCAATCAAATACCTGAAAGGTGATTTCTCATCAGATAAGGAGAAAGAAG
GAGCCTTGCTGGAGGAGGGTGAAGAAGAATGGTCAGACGATGGAGGGTTT
ACAACTTCACCATATAAAGGGTTCTCCCCCAACGATGCTCGAGGTGAAAT
CCAACAAACTGGTTTTGAAGGTGGAAAGTTCGTTTCAAAGGCTATCATAG
TGGTTTCTCTGCGTTATTTTCAAGAGAATCGGCGCATCATAGGTGTCGTA
AAGGCAGTAGATAATTGGAACACTAAAGCGGATGATGCGCCAAAACAAGT
AAAATTCGTATGTAAAACAATCACAAAGAAACAATATACAGCAAACACTA
ACTCAAAAGGAACTAAACGAAATATTCTATCGTTATCGTTTATGTTGGGA
CCCGTAGTTTATGAGGAAATCTTGAACGCTTCACTTTGTATACAACTTCT
TGGAAAGCGTAAGCGATTGAAACAAAAGTGGAAATGCTACGGTGAATGTT
ATATTGATTTGAACAATATTGTCGGTAAAAAAGACGCCGTAGAATTCCGT
AAAAACATTATGCCTAAAGCCGTTTACATCAAAGGCTTGAAATCTTCTAA
TACAGACTCTTCAGATACTGAAAATGCTTCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005359XLOC_005359Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009595-proteinTCONS_00009595-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009595-exon-sc0000097-1491911889:518047..518304TCONS_00009595-exon-sc0000097-1491911889:518047..518304Clytia hemisphaericaexon
TCONS_00009595-exon-sc0000097-1510915933:518047..518304TCONS_00009595-exon-sc0000097-1510915933:518047..518304Clytia hemisphaericaexon
TCONS_00009595-exon-sc0000097-1575043694:518047..518304TCONS_00009595-exon-sc0000097-1575043694:518047..518304Clytia hemisphaericaexon
TCONS_00009595-exon-sc0000097-1491911889:518797..519721TCONS_00009595-exon-sc0000097-1491911889:518797..519721Clytia hemisphaericaexon
TCONS_00009595-exon-sc0000097-1510915933:518797..519721TCONS_00009595-exon-sc0000097-1510915933:518797..519721Clytia hemisphaericaexon
TCONS_00009595-exon-sc0000097-1575043694:518797..519721TCONS_00009595-exon-sc0000097-1575043694:518797..519721Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:518047..519721 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.21147	2.18072	0	0	0.761964	0.58557	4.29854	6.69611	7.09152	5.84016	4.64124	4.72666	3.16698	0.351994	0.903091	0.617332	0	0	0	1.32001	0	0	0.75185	1.37468	0.906776	0	0	0	0.62107	0.852573
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009595 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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