TCONS_00009594 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009594
Unique NameTCONS_00009594
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1103

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009594 ID=TCONS_00009594|Name=TCONS_00009594|organism=Clytia hemisphaerica|type=transcript|length=1103bp
gttttttatcatttcccTGTTGTGAAGGATGTTCTTCTTGGAATActact
tgaaaataaaaattgttaaGATTGAGGTCTTTTGATGTGATCTTCTGAAC
ATGCAgGCTGCACGATTAGTGGTTGGTTCAAGCTTAAGAGGTGTGATTGC
CTCACCATTACTTTCTACACAAAGAAATTTCTCTAACACAGAACACGCAA
CGAGATCACCTGAAGATCAGTACGAGgATGTGGCCCAATTATTCAGTGAT
GTCAAACTAAAAGTACGAGGCAGTGATGAAGCTGTTCTTGATAGTTACAC
ACAATTCGTTCAACGAGCAGCAACTACTTTGAACCTCGATATATCTGGAA
AgATTGTTATTCCGATGCACATTGAGAAGAGAACGCTCTTGAAATCGCCA
CACGTTTACAAGACACACCGATATCAATATGAGTTACGTACGCATGCTCG
CATGTTGCAGCTACGACAAATGACTGGCAATACCGCTGATATCTTCTTGG
AGTACATTCAACGAAACCTTCCTGAAGGCGTCAGCATGAGCGTTGAAGCA
ACAGAACTTGAATCGATGCCTGACTACTTAACAAGGGCCGCTATGGAAAA
TTCATCCTAGGAAAAACGACATAatattacatttttatcaaaaatttaga
atattGAAAACTAGACAAAAACTAaccattaaaaatatttttgagtttAA
CAGCGCGGCTTTTATTATTTAGTTGAAACAGAATATTGTAAATTTTATGA
ATAGTAATAAATATAAGAACACTGTACAGTTTTTTTAACATCGAAACTGG
GATTCCTATTTCTCTCGTCtggtttttcttttgttcttattttaattACT
ATTTCTTTGCTACTGTGATATATATTTCGCTCGCCTTATCAGCTTAAGAA
GTTGCGTAATACGGCGTCTAGCTAAAGGTGATTCCTTGACCGCGATCGAA
AGTGAAATTCTGTTATTTATATGAAATTCTATAGCAGTTGAAatagaatc
aattttaaaccGAAGCTTAtcatatttaaaaaatctttgtgacctgtctc
aaatatttttgcATTAAATTTTCTAACTTGACAAACCGGTTTTTTGAACC
GCC
Run BLAST on NCBI

transcript from alignment at sc0000097:509573..511777+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009594 ID=TCONS_00009594|Name=TCONS_00009594|organism=Clytia hemisphaerica|type=transcript|length=2205bp|location=Sequence derived from alignment at sc0000097:509573..511777+ (Clytia hemisphaerica)
gttttttatcatttcccTGTTGTGAAGGATGTTCTTCTTGGAATActact
tgaaaataaaaattgttaaGATTGAGGTCTTTTGATGTGATCTTCTGAAC
ATGCAggtactttttctttttatgcaGGGTATATGTTTTTTTGGGGGGCG
GTGTGAAATCAATACGAGGATGATTTTCTTTTCTGGGAATGGAATATTGC
AATTTTGAACTGATACCCTCGCTTGCTTCCGACTAGGGCCttcgtttttc
tttaaaaatgcaATAAATTGTATGTCTGGCAATTTAAAACCCACACCTTA
TTATCTATTTTGTAGGCTGCACGATTAGTGGTTGGTTCAAGCTTAAGAGG
TGTGATTGCCTCACCATTACTTTCTACACAAAGAAATTTCTCTAACACAG
AACACGCAACGAGATCACCTGAAGATCAGTACGAGGTATGAATGtgtctt
aaaaagtttttaaaacaaTATCTGTAAGTACAGTATGCGAGTATTCTTCT
GGTTGCTCAGTGATAATACTTAATATGCGAAATTTATTTGTATCTGATGC
CGTAGAAATTGTTTTTACCAGATTCAACCAGAAGATTTAATTATACGCAC
TTTACTTGCATCTTCAACGCCGTTGATCGTTAGATTTTGCTTCTCATTCA
GTAAtgtttgtttttgatgttttaaggATGTGGCCCAATTATTCAGTGAT
GTCAAACTAAAAGTACGAGGCAGTGATGAAGCTGTTCTTGATAGTTACAC
ACAATTCGTTCAACGAGCAGCAACTACTTTGAACCTCGATATATCTGGAA
AGTAAgtcaaaaacgttgtgtttcatCACCCTCTTGAGCATTGTTACTTC
TCGAAAcggctttttaaaaagagttcaATCGAGAAAGGCGAGGGAAAGTT
TCATTGACGGTTACGAGTTCATTCACTAAACCGATATAGTTCTTATTTCC
AGTTCAGATATATTTACATTGACGGGCTCTTATGAAACAGTTTCTAATGA
TAAAATTCGTGCATTCCAGGTCATAGATGCTTTcatattttcaacaaaag
actTACGTCAAAGCTTAGCCAGCTTATTTTGACTTTCATGGTGTTCACAA
GGTGTTATCAAAATAAGTTCACAGTAGGGAAGGAACGGAAATGAAACTCT
TacataattataaattttttctttttttttgtaggATTGTTATTCCGATG
CACATTGAGAAGAGAACGCTCTTGAAATCGCCACACGTTTACAAGACACA
CCGATATCAATATGAGTTACGTACGCATGCTCGCATGTTGCAGGTCAGTC
TTCTCCCCTTTtgtatttaaaaatgttttacccGCTTTTCCAAACCATGA
TCGAAATAGTACTCTACCTTATTTCCTAGATATATCATATAAAATGTCCC
TTGGGTCGATCAGTGAAATTTTCACGGCTAGTCactttaaaaaatatcat
tAGTCGATCTGTTGGAATGTCAAAAGTGCAGAAATCTTGTGAAATCACTA
TCTGTAGTCAAAAGCTTTCTTTAACGACATACTCATTTAGCATTATTCTC
AATCCATTTCAGCTACGACAAATGACTGGCAATACCGCTGATATCTTCTT
GGAGTACATTCAACGAAACCTTCCTGAAGGCGTCAGCATGAGCGTTGAAG
CAACAGAACTTGAATCGATGCCTGACTACTTAACAAGGGCCGCTATGGAA
AATTCATCCTAGGAAAAACGACATAatattacatttttatcaaaaattta
gaatattGAAAACTAGACAAAAACTAaccattaaaaatatttttgagttt
AACAGCGCGGCTTTTATTATTTAGTTGAAACAGAATATTGTAAATTTTAT
GAATAGTAATAAATATAAGAACACTGTACAGTTTTTTTAACATCGAAACT
GGGATTCCTATTTCTCTCGTCtggtttttcttttgttcttattttaattA
CTATTTCTTTGCTACTGTGATATATATTTCGCTCGCCTTATCAGCTTAAG
AAGTTGCGTAATACGGCGTCTAGCTAAAGGTGATTCCTTGACCGCGATCG
AAAGTGAAATTCTGTTATTTATATGAAATTCTATAGCAGTTGAAatagaa
tcaattttaaaccGAAGCTTAtcatatttaaaaaatctttgtgacctgtc
tcaaatatttttgcATTAAATTTTCTAACTTGACAAACCGGTTTTTTGAA
CCGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005358XLOC_005358Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009594-exon-sc0000097-1491911889:509573..509678TCONS_00009594-exon-sc0000097-1491911889:509573..509678Clytia hemisphaericaexon
TCONS_00009594-exon-sc0000097-1510915933:509573..509678TCONS_00009594-exon-sc0000097-1510915933:509573..509678Clytia hemisphaericaexon
TCONS_00009594-exon-sc0000097-1575043694:509573..509678TCONS_00009594-exon-sc0000097-1575043694:509573..509678Clytia hemisphaericaexon
TCONS_00009594-exon-sc0000097-1491911889:509888..510007TCONS_00009594-exon-sc0000097-1491911889:509888..510007Clytia hemisphaericaexon
TCONS_00009594-exon-sc0000097-1510915933:509888..510007TCONS_00009594-exon-sc0000097-1510915933:509888..510007Clytia hemisphaericaexon
TCONS_00009594-exon-sc0000097-1575043694:509888..510007TCONS_00009594-exon-sc0000097-1575043694:509888..510007Clytia hemisphaericaexon
TCONS_00009594-exon-sc0000097-1491911889:510249..510373TCONS_00009594-exon-sc0000097-1491911889:510249..510373Clytia hemisphaericaexon
TCONS_00009594-exon-sc0000097-1510915933:510249..510373TCONS_00009594-exon-sc0000097-1510915933:510249..510373Clytia hemisphaericaexon
TCONS_00009594-exon-sc0000097-1575043694:510249..510373TCONS_00009594-exon-sc0000097-1575043694:510249..510373Clytia hemisphaericaexon
TCONS_00009594-exon-sc0000097-1491911889:510757..510865TCONS_00009594-exon-sc0000097-1491911889:510757..510865Clytia hemisphaericaexon
TCONS_00009594-exon-sc0000097-1510915933:510757..510865TCONS_00009594-exon-sc0000097-1510915933:510757..510865Clytia hemisphaericaexon
TCONS_00009594-exon-sc0000097-1575043694:510757..510865TCONS_00009594-exon-sc0000097-1575043694:510757..510865Clytia hemisphaericaexon
TCONS_00009594-exon-sc0000097-1491911889:511135..511777TCONS_00009594-exon-sc0000097-1491911889:511135..511777Clytia hemisphaericaexon
TCONS_00009594-exon-sc0000097-1510915933:511135..511777TCONS_00009594-exon-sc0000097-1510915933:511135..511777Clytia hemisphaericaexon
TCONS_00009594-exon-sc0000097-1575043694:511135..511777TCONS_00009594-exon-sc0000097-1575043694:511135..511777Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:509573..511777 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.464	0	0	3.82154	14.1999	3.75701	0.000532668	26.4961	12.5977	7.71036	42.463	0.179183	0	0	0.194274	0.846001	3.69028	1.06926	0	105.105	88.3554	181.45	209.605	89.5446	89.3219	83.7944	65.8868	32.0885	12.6782
Blast
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BLAST of TCONS_00009594 vs. Swiss-Prot (Human)
Match: RT10 (28S ribosomal protein S10, mitochondrial OS=Homo sapiens GN=MRPS10 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.894e-31
Identity = 62/126 (49.21%), Postives = 83/126 (65.87%), Query Frame = 2 
Query:  239 LFSDVKLKVRGSDEAVLDSYTQFVQRAATTLNLDISGKIVIPMHIEKRTLLKSPHVYKTHRYQYELRTHARMLQLRQMTGNTADIFLEYIQRNLPEGVSMSVEATELESMPDYLTRAAMENSS*EK 616
            L+  + + V+G D+AVLDSY  F   AA  L + I      P  IE+ TLL+S H+YK HR QYE+RT  R L+L  +TG+TAD++LEYIQRNLPEGV+M V  T+LE +P+++     E  S EK
Sbjct:   72 LYKRLSVLVKGHDKAVLDSYEYFAVLAAKELGISIKVH-EPPRKIERFTLLQSVHIYKKHRVQYEMRTLYRCLELEHLTGSTADVYLEYIQRNLPEGVAMEVTKTQLEQLPEHIKEPIWETLSEEK 196
The following BLAST results are available for this feature:
BLAST of TCONS_00009594 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RT102.894e-3149.2128S ribosomal protein S10, mitochondrial OS=Homo s... [more]
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