TCONS_00009590 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009590
Unique NameTCONS_00009590
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length770

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009590 ID=TCONS_00009590|Name=TCONS_00009590|organism=Clytia hemisphaerica|type=transcript|length=770bp
gcgacatattttttggccccctcaattcaATTAGCACGCCGGGGACCATG
CCAGAGTTAAATATTTATACTAAATCAAGTTTTATTCCTTCATCCaaatt
ccagcttttccttgGCCTCAGTTTCCTACATCTAATACCCGAGACTCTCC
ATGGTATCCATGACAACGAATCCCTAATGAAAATACAGAAGGTGTATCCA
TTTGGTGAACTGGTTGTCATCTTGGGCATGATTCTGGTACTGGCCACTGA
GAAGTTCGCAGGAATGATCCAAATTAACCGCAAAACCACCAAAGTGAAAT
GTGATGCTAGCGAGAATTGCTGCCAAGAAGAATGCACTATACAGGGGCTG
GGTATGGGTATGCATATGTATTAGTTGTAGTATTAGGGTTAAGGGTGTGG
TATAGTTCAAGATAATGAGAGGTATCTAAAAGGGGTTGAAAGGTCAAGTC
AAGGTCCGAGGACCTGGGCGCCAATTGGGCTTAGTcacatttcttaaaaa
aaaaagacatttttggacatttttaaGTACCTTCAAATACACAACAGTAA
GCTGCTTATGGCAACCagtgaatgggcttttccagaaataatctgtgccc
ccctgttgagggtatcggatatccagggggttaacgatttttgttcaaaa
gtggatattcagggggttaaatatctacaaagggagcggatatccagggg
gtaaagtgtcttttcaagtaagaagtacgatatccaggggtaagcatatt
tttaagagtgaatatccagg
Run BLAST on NCBI

transcript from alignment at sc0000097:406312..407081+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009590 ID=TCONS_00009590|Name=TCONS_00009590|organism=Clytia hemisphaerica|type=transcript|length=770bp|location=Sequence derived from alignment at sc0000097:406312..407081+ (Clytia hemisphaerica)
gcgacatattttttggccccctcaattcaATTAGCACGCCGGGGACCATG
CCAGAGTTAAATATTTATACTAAATCAAGTTTTATTCCTTCATCCaaatt
ccagcttttccttgGCCTCAGTTTCCTACATCTAATACCCGAGACTCTCC
ATGGTATCCATGACAACGAATCCCTAATGAAAATACAGAAGGTGTATCCA
TTTGGTGAACTGGTTGTCATCTTGGGCATGATTCTGGTACTGGCCACTGA
GAAGTTCGCAGGAATGATCCAAATTAACCGCAAAACCACCAAAGTGAAAT
GTGATGCTAGCGAGAATTGCTGCCAAGAAGAATGCACTATACAGGGGCTG
GGTATGGGTATGCATATGTATTAGTTGTAGTATTAGGGTTAAGGGTGTGG
TATAGTTCAAGATAATGAGAGGTATCTAAAAGGGGTTGAAAGGTCAAGTC
AAGGTCCGAGGACCTGGGCGCCAATTGGGCTTAGTcacatttcttaaaaa
aaaaagacatttttggacatttttaaGTACCTTCAAATACACAACAGTAA
GCTGCTTATGGCAACCagtgaatgggcttttccagaaataatctgtgccc
ccctgttgagggtatcggatatccagggggttaacgatttttgttcaaaa
gtggatattcagggggttaaatatctacaaagggagcggatatccagggg
gtaaagtgtcttttcaagtaagaagtacgatatccaggggtaagcatatt
tttaagagtgaatatccagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005355XLOC_005355Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009590-exon-sc0000097-1491911889:406312..407081TCONS_00009590-exon-sc0000097-1491911889:406312..407081Clytia hemisphaericaexon
TCONS_00009590-exon-sc0000097-1510915933:406312..407081TCONS_00009590-exon-sc0000097-1510915933:406312..407081Clytia hemisphaericaexon
TCONS_00009590-exon-sc0000097-1575043694:406312..407081TCONS_00009590-exon-sc0000097-1575043694:406312..407081Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:406312..407081 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.560256	1.38343	0.587073	1.5463	1.33949	1.49252	1.71499	1.34437	1.11577	0.530431	0.752694	1.27245	0.351366	0.196698	0.500088	0.816163	1.16408	0	0	0.388812	0.169524	0.45178	0.254135	1.38031	0.373564	0.488904	6.37657	4.19667	0.458235	0.981627
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009590 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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