TCONS_00009572 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009572
Unique NameTCONS_00009572
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length303

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009572 ID=TCONS_00009572|Name=TCONS_00009572|organism=Clytia hemisphaerica|type=transcript|length=303bp
TACAGATGAAAAATTCATGGATCTAACGTGTCAACCATATGGTTTTGCCG
CTGGGTTTAGTATGAAAGGTTTGAGCAAAAAGCCTGCATCATATTCCATT
CAATTTGCTGGTAATAAAGATTGCGGAATATTTAATGCGAGCTCCACTGA
CAAGATCTATAAAGGCCGTCTTTGGATGACGTCAAATTATACGGACTGTG
GCGTCGAGGCTTACCATTCTGGTGATCAAATTGTCTTCGAGAAACAAATC
ATTATTTTGTATGGACCAAAAGATGATTCAGATTTGATTTATCGCCATTC
TAA
Run BLAST on NCBI

protein sequence of TCONS_00009572-protein

>TCONS_00009572-protein ID=TCONS_00009572-protein|Name=TCONS_00009572-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
TDEKFMDLTCQPYGFAAGFSMKGLSKKPASYSIQFAGNKDCGIFNASSTD
KIYKGRLWMTSNYTDCGVEAYHSGDQIVFEKQIIILYGPKDDSDLIYRHS
Run BLAST on NCBI

transcript from alignment at sc0000097:210211..210955+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009572 ID=TCONS_00009572|Name=TCONS_00009572|organism=Clytia hemisphaerica|type=transcript|length=745bp|location=Sequence derived from alignment at sc0000097:210211..210955+ (Clytia hemisphaerica)
TACAGATGAAAAATTCATGGATCTAACGTGTCAACCATATGGTTTTGCCG
CTGGGTTTAGTATGAAAGGTTTGAGCAAAAAGCCTGCATCATATTCCATT
CAATTTGCTGGTAATAAAGATTGCGGAATATTTAATGCGAGCTCCACTGA
CAAGATCTATAAAGGTATTTATTTCTCGTTTTCATAAGTAATTGCGTCGA
TGATAATCGTGGATAACTCagcattgttaaccggttactttttctttttc
gaagcgggctacatggtTTTTTGctcaatgcaattggttcttttcgcatg
acgacgggcctacactgtaCAGAGTTGCCCGTTGTTAAGAAAATCCATTG
TGGCGTCacttttcaaaggaaaaatgaacaatgcgttgatacatcatttc
atttgttttttccGCTTTATTTCCGCTTTATAGGATAAAGCTCTAAAAAt
caaaaccggtcattattgtattaatgtaaaatttttagacagtcttccat
ttgttttcacggggtcaaCAGTTTGCTATTGTTGAAATTTCACCTCCCTC
TCTTATGCATTTTTCCCATACACACACTGTTAAACTTTATTTCCCTCTTT
TTGCAGGCCGTCTTTGGATGACGTCAAATTATACGGACTGTGGCGTCGAG
GCTTACCATTCTGGTGATCAAATTGTCTTCGAGAAACAAATCATTATTTT
GTATGGACCAAAAGATGATTCAGATTTGATTTATCGCCATTCTAA

Coding sequence (CDS) from alignment at sc0000097:210211..210955+

>TCONS_00009572 ID=TCONS_00009572|Name=TCONS_00009572|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at sc0000097:210211..210955+ (Clytia hemisphaerica)
ACAGATGAAAAATTCATGGATCTAACGTGTCAACCATATGGTTTTGCCGC
TGGGTTTAGTATGAAAGGTTTGAGCAAAAAGCCTGCATCATATTCCATTC
AATTTGCTGGTAATAAAGATTGCGGAATATTTAATGCGAGCTCCACTGAC
AAGATCTATAAAGGCCGTCTTTGGATGACGTCAAATTATACGGACTGTGG
CGTCGAGGCTTACCATTCTGGTGATCAAATTGTCTTCGAGAAACAAATCA
TTATTTTGTATGGACCAAAAGATGATTCAGATTTGATTTATCGCCATTCT
ACAGATGAAAAATTCATGGATCTAACGTGTCAACCATATGGTTTTGCCGC
TGGGTTTAGTATGAAAGGTTTGAGCAAAAAGCCTGCATCATATTCCATTC
AATTTGCTGGTAATAAAGATTGCGGAATATTTAATGCGAGCTCCACTGAC
AAGATCTATAAAGGCCGTCTTTGGATGACGTCAAATTATACGGACTGTGG
CGTCGAGGCTTACCATTCTGGTGATCAAATTGTCTTCGAGAAACAAATCA
TTATTTTGTATGGACCAAAAGATGATTCAGATTTGATTTATCGCCATTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005352XLOC_005352Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009572-proteinTCONS_00009572-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009572-exon-sc0000097-1491911889:210211..210374TCONS_00009572-exon-sc0000097-1491911889:210211..210374Clytia hemisphaericaexon
TCONS_00009572-exon-sc0000097-1510915933:210211..210374TCONS_00009572-exon-sc0000097-1510915933:210211..210374Clytia hemisphaericaexon
TCONS_00009572-exon-sc0000097-1575043694:210211..210374TCONS_00009572-exon-sc0000097-1575043694:210211..210374Clytia hemisphaericaexon
TCONS_00009572-exon-sc0000097-1491911889:210817..210955TCONS_00009572-exon-sc0000097-1491911889:210817..210955Clytia hemisphaericaexon
TCONS_00009572-exon-sc0000097-1510915933:210817..210955TCONS_00009572-exon-sc0000097-1510915933:210817..210955Clytia hemisphaericaexon
TCONS_00009572-exon-sc0000097-1575043694:210817..210955TCONS_00009572-exon-sc0000097-1575043694:210817..210955Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:210211..210955 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.508472	0	0.484756	0	0	0	0.382002	0	2.7584	2.08336	0.214101	0.229763	0	0.290117	6.01218	9.64668	0	0	0	2.5641	12.5495	6.86457	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009572 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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