TCONS_00009567 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009567
Unique NameTCONS_00009567
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length811

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009567 ID=TCONS_00009567|Name=TCONS_00009567|organism=Clytia hemisphaerica|type=transcript|length=811bp
TCTCAGCTATGGAAAATAATTGGGCCAAAATCTTTGGAGGTATTTCTTAG
GACCAAAAACAGCCATAAAAGGTATCTCTAggccaaatataaaaaataat
ctGATAATTTAAAGCTATTAGAGAGTCCATCAAGGACTACTTTCACTTGC
ATTTTGTTCTTCCAAGTCCATACAGTAAGATCTACTTGGGTTTTATATCT
TCGTTCACCAACAGTTCTTACTCTACTTTTATTTGAATACCCTTTCTTAG
ATTACGCTACGGTTCCGTTTGGCTCTTCCGAAACAAAATGaaaccattct
attggttaaattcaatatttacgtcacttctaaccaatagaatggcttca
tttcgtttcggggCGAAACGGAATCGTAGCGTGCGAACATGACCTTAATA
ATAACGAAGCTTTATTGCTTTCATATTACATCGGGCTTGAAGGCGTTTGT
TCTTCACAGTCCACACAGTAAGATCAACTTAACTCTACAAAACTACCCTT
TCATCATAATGAGAAAGCTTCTTTTTTCATCAGGCTTGAAGGCGTTCATT
CAAAACATGTTGAGCAAGAACGATGTATATTTTGTTACCCTCTCACAAGC
AGTTGAATGGATGAAAAACCCGACTACTCTGGATAAAATCAAGACCTTCA
GACCATGGCAATGTTAAATCAAAGAGATGACCAAATTTAtctatttattt
gaatttttataattttactcaattttacaataatttagttttttttgtta
atgaaaaataaaaagcttCAAACTTCAAAAGTCCTTCGTCATTACGTCTc
tctaagctcta
Run BLAST on NCBI

transcript from alignment at sc0000097:47759..48569+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009567 ID=TCONS_00009567|Name=TCONS_00009567|organism=Clytia hemisphaerica|type=transcript|length=811bp|location=Sequence derived from alignment at sc0000097:47759..48569+ (Clytia hemisphaerica)
TCTCAGCTATGGAAAATAATTGGGCCAAAATCTTTGGAGGTATTTCTTAG
GACCAAAAACAGCCATAAAAGGTATCTCTAggccaaatataaaaaataat
ctGATAATTTAAAGCTATTAGAGAGTCCATCAAGGACTACTTTCACTTGC
ATTTTGTTCTTCCAAGTCCATACAGTAAGATCTACTTGGGTTTTATATCT
TCGTTCACCAACAGTTCTTACTCTACTTTTATTTGAATACCCTTTCTTAG
ATTACGCTACGGTTCCGTTTGGCTCTTCCGAAACAAAATGaaaccattct
attggttaaattcaatatttacgtcacttctaaccaatagaatggcttca
tttcgtttcggggCGAAACGGAATCGTAGCGTGCGAACATGACCTTAATA
ATAACGAAGCTTTATTGCTTTCATATTACATCGGGCTTGAAGGCGTTTGT
TCTTCACAGTCCACACAGTAAGATCAACTTAACTCTACAAAACTACCCTT
TCATCATAATGAGAAAGCTTCTTTTTTCATCAGGCTTGAAGGCGTTCATT
CAAAACATGTTGAGCAAGAACGATGTATATTTTGTTACCCTCTCACAAGC
AGTTGAATGGATGAAAAACCCGACTACTCTGGATAAAATCAAGACCTTCA
GACCATGGCAATGTTAAATCAAAGAGATGACCAAATTTAtctatttattt
gaatttttataattttactcaattttacaataatttagttttttttgtta
atgaaaaataaaaagcttCAAACTTCAAAAGTCCTTCGTCATTACGTCTc
tctaagctcta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005348XLOC_005348Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009567-exon-sc0000097-1491911889:47759..48569TCONS_00009567-exon-sc0000097-1491911889:47759..48569Clytia hemisphaericaexon
TCONS_00009567-exon-sc0000097-1510915933:47759..48569TCONS_00009567-exon-sc0000097-1510915933:47759..48569Clytia hemisphaericaexon
TCONS_00009567-exon-sc0000097-1575043694:47759..48569TCONS_00009567-exon-sc0000097-1575043694:47759..48569Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:47759..48569 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.428455	1.51488	1.27836	0	0	0	0.19987	0.218286	0.530793	0.123631	0.111712	0.19583	0.382179	0.289942	0.505215	0	0.117652	0	0	0.0578833	0.0890415	0	0	0.0634605	0.171307	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009567 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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