TCONS_00009565 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009565
Unique NameTCONS_00009565
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length233

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009565 ID=TCONS_00009565|Name=TCONS_00009565|organism=Clytia hemisphaerica|type=transcript|length=233bp
GGCAGATTTGAGAAATCTTAAGAATCCTAATCACGAAAATTATTCTTCAC
GTGAAATTTACTGTAGGAATGGATCAAGAATGAGAAGAAGGCCCCCAGTA
AAAAGAAAACCGAAAAGCGAAATCCAAGAGGATACGACCTATTCAAATCT
AAATGGTTGACTGATAACCCGAATAGCTCGCTACGAGAAGCTAATATTGC
ATGGAAAGAATTGGTAGATGAAGAAAAGCTTGA
Run BLAST on NCBI

transcript from alignment at sc0000097:12803..13196+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009565 ID=TCONS_00009565|Name=TCONS_00009565|organism=Clytia hemisphaerica|type=transcript|length=394bp|location=Sequence derived from alignment at sc0000097:12803..13196+ (Clytia hemisphaerica)
GGCAGATTTGAGAAATCTTAAGAATCCTAATCACGAAAATTATTCTTCAC
GTGAAATTTACTGTAGGAATGGATCAAGAATGAGAAGAAGGCCCCCAGTA
AAAAGAAAACCGAAAAGCGAAATCCAAGAGGATACGACCTATTCAAATCT
AAATGGTTGACTGGTCTAAACTTAATTacggattttattttatttacctg
ttttcaaatatattcaatgatgattttatttttcatttctagtTGTGTTT
TAATTAAAACTATTACATTATTTATTCAATGACAAGACAATAAATAGCTT
GCTCTTATTCTAATATGATTTCAGATAACCCGAATAGCTCGCTACGAGAA
GCTAATATTGCATGGAAAGAATTGGTAGATGAAGAAAAGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005347XLOC_005347Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009565-exon-sc0000097-1491911889:12803..12965TCONS_00009565-exon-sc0000097-1491911889:12803..12965Clytia hemisphaericaexon
TCONS_00009565-exon-sc0000097-1510915933:12803..12965TCONS_00009565-exon-sc0000097-1510915933:12803..12965Clytia hemisphaericaexon
TCONS_00009565-exon-sc0000097-1575043694:12803..12965TCONS_00009565-exon-sc0000097-1575043694:12803..12965Clytia hemisphaericaexon
TCONS_00009565-exon-sc0000097-1491911889:13127..13196TCONS_00009565-exon-sc0000097-1491911889:13127..13196Clytia hemisphaericaexon
TCONS_00009565-exon-sc0000097-1510915933:13127..13196TCONS_00009565-exon-sc0000097-1510915933:13127..13196Clytia hemisphaericaexon
TCONS_00009565-exon-sc0000097-1575043694:13127..13196TCONS_00009565-exon-sc0000097-1575043694:13127..13196Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:12803..13196 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	6.78775	5.36377	5.17693	6.05823	3.39321	2.10152	0	0.670437	5.35604	4.86701	0	0	0	0	0	0	0	0	0	0	1.08082	2.89381	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009565 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top