TCONS_00009564 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009564
Unique NameTCONS_00009564
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length852

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009564 ID=TCONS_00009564|Name=TCONS_00009564|organism=Clytia hemisphaerica|type=transcript|length=852bp
gttcaataattttttgttttttttttcctttccgAATTTTCTTTTCGTAA
GATAGCAGCAGCCATTGGAAAATAAAATGTTGTTACTGTTTTCATTACAA
CATATAGTGTCTTTGCATTTTTTAAGCAGGTTTGATTAAAGAAATCTTGC
CTTGAGCGTATGGTGTGATACGTAAACTCATAAGGATCATAATTtgggtt
ttttataatttctacAAAGTTTAGCCAATCGTAGGGgtagatgaaaaatg
aattagGGACTTTCGGAAAAATTCGTTGTATTGGCATCCAAAAGTCTAAT
GGACAAGTACTCTTTTCTCTATAAGCACATTGGATAATGATATCCCAGGA
GCGTTCATTCTGAAGTCTCTTTAAAAGCTTATGCAGTTCAATTTCATCGG
GATTATAATATGTGTTGGGTGTCATATAAACAAGTGTTTGTTTTCACGCG
TTTTCGTCCATCAGCTTCTGATTAACAAATCTTAAGGTCTTGTGTGGTGG
TATACTTTCTATAAACGGATAATCATTAGCATCAAAAAACATCTCCAGTT
GATTGTCATTTCCCTTCCGAAGTCGAATGGAATTATCGTAATTCTTCTGA
TAAACGTATACAGCATAACAGGCCTCGTTTTCAATCACATCATCAAGAAG
AGAAGTTAATCGATACAAATTTCTCCTTGATAAATTATTGATAAATTAAA
GTGATGTTTCTTTGTTCAGAGCATTCCAGCATCTTGAAATCTCTTACTTG
AAACAAATCTGCATTAGAGCAAGACATCCATGTACAACATAGAAATGCGA
ACGAAActagaaatattttaaaattcatatttctttataacTCGGACCTC
TC
Run BLAST on NCBI

transcript from alignment at sc0000095:649585..650436

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009564 ID=TCONS_00009564|Name=TCONS_00009564|organism=Clytia hemisphaerica|type=transcript|length=852bp|location=Sequence derived from alignment at sc0000095:649585..650436 (Clytia hemisphaerica)
GAGAGGTCCGAgttataaagaaatatgaattttaaaatatttctagTTTC
GTTCGCATTTCTATGTTGTACATGGATGTCTTGCTCTAATGCAGATTTGT
TTCAAGTAAGAGATTTCAAGATGCTGGAATGCTCTGAACAAAGAAACATC
ACTTTAATTTATCAATAATTTATCAAGGAGAAATTTGTATCGATTAACTT
CTCTTCTTGATGATGTGATTGAAAACGAGGCCTGTTATGCTGTATACGTT
TATCAGAAGAATTACGATAATTCCATTCGACTTCGGAAGGGAAATGACAA
TCAACTGGAGATGTTTTTTGATGCTAATGATTATCCGTTTATAGAAAGTA
TACCACCACACAAGACCTTAAGATTTGTTAATCAGAAGCTGATGGACGAA
AACGCGTGAAAACAAACACTTGTTTATATGACACCCAACACATATTATAA
TCCCGATGAAATTGAACTGCATAAGCTTTTAAAGAGACTTCAGAATGAAC
GCTCCTGGGATATCATTATCCAATGTGCTTATAGAGAAAAGAGTACTTGT
CCATTAGACTTTTGGATGCCAATACAACGAATTTTTCCGAAAGTCCctaa
ttcatttttcatctacCCCTACGATTGGCTAAACTTTgtagaaattataa
aaaacccaAATTATGATCCTTATGAGTTTACGTATCACACCATACGCTCA
AGGCAAGATTTCTTTAATCAAACCTGCTTAAAAAATGCAAAGACACTATA
TGTTGTAATGAAAACAGTAACAACATTTTATTTTCCAATGGCTGCTGCTA
TCTTACGAAAAGAAAATTcggaaaggaaaaaaaaaacaaaaaattattga
ac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005346XLOC_005346Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009564-exon-sc0000095-1491911889:649585..650436TCONS_00009564-exon-sc0000095-1491911889:649585..650436Clytia hemisphaericaexon
TCONS_00009564-exon-sc0000095-1510915933:649585..650436TCONS_00009564-exon-sc0000095-1510915933:649585..650436Clytia hemisphaericaexon
TCONS_00009564-exon-sc0000095-1575043694:649585..650436TCONS_00009564-exon-sc0000095-1575043694:649585..650436Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:649585..650436 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.0579944	0	0	0	0	0.376042	0.167281	0.175958	0	0.218474	0	0.637662	0.313615	0	0.223146	8.1276	3.57743	10.4633	7.87119
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009564 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top