TCONS_00009557 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009557
Unique NameTCONS_00009557
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length325

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009557 ID=TCONS_00009557|Name=TCONS_00009557|organism=Clytia hemisphaerica|type=transcript|length=325bp
CTCAACTAAGAAAGCTTGAGCTAGGTGAAACCAAAGACTTGATTCTCAAA
CTCAACGTTTTCGATATAAACTTAGTTTGACGACGCCGGAGAACTTATAT
AAGGACAAAGACCAAAAGcatattcaatgatgtatctatttaaagATCCA
AGTGTTAAAGGAATTGAAAGCCTGGAGGCTGGTTTAACAATTGTGTGTGA
CGAATTATTGAAGGTCTGGGGCGATCCCTCCGGCTCCGCCCTCTGGCTGG
ATTATTTACATTCACGAAGAAATCGTGCACGACTAGATGTCCAAGTGGAT
TCTTGTATCACAACAGATCAACTTT
Run BLAST on NCBI

transcript from alignment at sc0000095:441218..441542

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009557 ID=TCONS_00009557|Name=TCONS_00009557|organism=Clytia hemisphaerica|type=transcript|length=325bp|location=Sequence derived from alignment at sc0000095:441218..441542 (Clytia hemisphaerica)
AAAGTTGATCTGTTGTGATACAAGAATCCACTTGGACATCTAGTCGTGCA
CGATTTCTTCGTGAATGTAAATAATCCAGCCAGAGGGCGGAGCCGGAGGG
ATCGCCCCAGACCTTCAATAATTCGTCACACACAATTGTTAAACCAGCCT
CCAGGCTTTCAATTCCTTTAACACTTGGATctttaaatagatacatcatt
gaatatgCTTTTGGTCTTTGTCCTTATATAAGTTCTCCGGCGTCGTCAAA
CTAAGTTTATATCGAAAACGTTGAGTTTGAGAATCAAGTCTTTGGTTTCA
CCTAGCTCAAGCTTTCTTAGTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005339XLOC_005339Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009557-exon-sc0000095-1491911889:441218..441542TCONS_00009557-exon-sc0000095-1491911889:441218..441542Clytia hemisphaericaexon
TCONS_00009557-exon-sc0000095-1510915933:441218..441542TCONS_00009557-exon-sc0000095-1510915933:441218..441542Clytia hemisphaericaexon
TCONS_00009557-exon-sc0000095-1575043694:441218..441542TCONS_00009557-exon-sc0000095-1575043694:441218..441542Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:441218..441542 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.60171	0	0	0.512901	5.07808	2.0351	4.33835	5.07721	0.61907	2.07614	2.75762	1.69396	3.32747	0.614312	1.11929	2.02592	0.445137	3.45562	5.62631	6.08393	0	4.05326	1.42001	0	2.37038	3.10438	8.42194	1.19335	4.41434	4.70564
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009557 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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