TCONS_00009552 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009552
Unique NameTCONS_00009552
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length886

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009552 ID=TCONS_00009552|Name=TCONS_00009552|organism=Clytia hemisphaerica|type=transcript|length=886bp
CTTTTTGTAGGAGTGAGGTGTGCCTAAAATATGAGCCCCTAAAGTTTACA
CTTAATTTAGGCctgaaacaaaataattttgtcaCATCACGATAGTTATG
CAGGTTTTTTAAAGCGAAAACAAAAGAAGCCTATTAACTCAaaacaaact
cccttaagggctaGAAACCTGGTATACAgagagccgtttttccattgttt
tcacgaagctgtttttccatctcttaaCATTCCTCTGGGTATCCCAAGAA
TGTTTTAGTGTCACTCATCATAATATAGGCGATGAGAATAATGGTTTTCC
ATCAGGAATGTTTAAAACGACCGCTAGAGGGGTTTGTATATCGTTCATCC
GTCATCGCTCCGATGTCTGCTCTTTTAAAAGGTTGATCAATATTATTGTA
ATGTTCTAAGAAGGCTTTTATGCCATTATTGAAATCATCAGTCGTGAATT
TTTCTAATTCAAGCATTGAGCAACTCAAAGATAACCGCTTCTCTTGGTGT
GATTGGATTTTGTCGATGAGATCTTCACATAGAGCGGCGTTGTGTTGGTC
AATTATTCTTGGTGATAGGTTTTTGAAGCAGTTCAAGAGAAGCGTATCCA
CGTCATGCGGGTACTTTTTTGACTCGTTGAGTTTCTCTTCTTTGTAATTT
CTGCAAGTTCATCAGGAAGAAAGCTTTTAAAGAAAAGCCAGTTTTTGATG
CGCCTATTGAGACCAGCATTGACTTCTAGAAAGGCTTCTTTCAAAGGCTT
TTCCTTATCGTATCCAGCAAAAACAAACACAGGATTGGAATTTCCGTTTG
GGCAGGAGGTCGTATGTTCCATTATGGTCTCGATAGCCTCTTTTCCATAA
TCCACACGGTCCGTTTGCGATGAAAGGCGATAgata
Run BLAST on NCBI

protein sequence of TCONS_00009552-protein

>TCONS_00009552-protein ID=TCONS_00009552-protein|Name=TCONS_00009552-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
IYRLSSQTDRVDYGKEAIETIMEHTTSCPNGNSNPVFVFAGYDKEKPLKE
AFLEVNAGLNRRIKNWLFFKSFLPDELAEITKKRNSTSQKSTRMTWIRFS
Run BLAST on NCBI

transcript from alignment at sc0000095:212643..213528

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009552 ID=TCONS_00009552|Name=TCONS_00009552|organism=Clytia hemisphaerica|type=transcript|length=886bp|location=Sequence derived from alignment at sc0000095:212643..213528 (Clytia hemisphaerica)
tatcTATCGCCTTTCATCGCAAACGGACCGTGTGGATTATGGAAAAGAGG
CTATCGAGACCATAATGGAACATACGACCTCCTGCCCAAACGGAAATTCC
AATCCTGTGTTTGTTTTTGCTGGATACGATAAGGAAAAGCCTTTGAAAGA
AGCCTTTCTAGAAGTCAATGCTGGTCTCAATAGGCGCATCAAAAACTGGC
TTTTCTTTAAAAGCTTTCTTCCTGATGAACTTGCAGAAATTACAAAGAAG
AGAAACTCAACGAGTCAAAAAAGTACCCGCATGACGTGGATACGCTTCTC
TTGAACTGCTTCAAAAACCTATCACCAAGAATAATTGACCAACACAACGC
CGCTCTATGTGAAGATCTCATCGACAAAATCCAATCACACCAAGAGAAGC
GGTTATCTTTGAGTTGCTCAATGCTTGAATTAGAAAAATTCACGACTGAT
GATTTCAATAATGGCATAAAAGCCTTCTTAGAACATTACAATAATATTGA
TCAACCTTTTAAAAGAGCAGACATCGGAGCGATGACGGATGAACGATATA
CAAACCCCTCTAGCGGTCGTTTTAAACATTCCTGATGGAAAACCATTATT
CTCATCGCCTATATTATGATGAGTGACACTAAAACATTCTTGGGATACCC
AGAGGAATGttaagagatggaaaaacagcttcgtgaaaacaatggaaaaa
cggctctcTGTATACCAGGTTTCtagcccttaagggagtttgtttTGAGT
TAATAGGCTTCTTTTGTTTTCGCTTTAAAAAACCTGCATAACTATCGTGA
TGtgacaaaattattttgtttcagGCCTAAATTAAGTGTAAACTTTAGGG
GCTCATATTTTAGGCACACCTCACTCCTACAAAAAG

Coding sequence (CDS) from alignment at sc0000095:212643..213528

>TCONS_00009552 ID=TCONS_00009552|Name=TCONS_00009552|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at sc0000095:212643..213528 (Clytia hemisphaerica)
atcTATCGCCTTTCATCGCAAACGGACCGTGTGGATTATGGAAAAGAGGC
TATCGAGACCATAATGGAACATACGACCTCCTGCCCAAACGGAAATTCCA
ATCCTGTGTTTGTTTTTGCTGGATACGATAAGGAAAAGCCTTTGAAAGAA
GCCTTTCTAGAAGTCAATGCTGGTCTCAATAGGCGCATCAAAAACTGGCT
TTTCTTTAAAAGCTTTCTTCCTGATGAACTTGCAGAAATTACAAAGAAGA
GAAACTCAACGAGTCAAAAAAGTACCCGCATGACGTGGATACGCTTCTCT
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005334XLOC_005334Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009552-proteinTCONS_00009552-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009552-exon-sc0000095-1491911889:212643..213528TCONS_00009552-exon-sc0000095-1491911889:212643..213528Clytia hemisphaericaexon
TCONS_00009552-exon-sc0000095-1510915933:212643..213528TCONS_00009552-exon-sc0000095-1510915933:212643..213528Clytia hemisphaericaexon
TCONS_00009552-exon-sc0000095-1575043694:212643..213528TCONS_00009552-exon-sc0000095-1575043694:212643..213528Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:212643..213528 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.102205	0	0.0580499	1.83743	1.34027	0.606367	0.252299	0.309121	0.328197	0.0530926	0.174505	0.313672	0.180973	0.178542	0.191602	0	0.0806439	0	0.0582933	0.20267	0.370707	0.180257	0.0546267	0.337585	0.150643	0.0718568	0.0766875	0.116329	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009552 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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