TCONS_00009548 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009548
Unique NameTCONS_00009548
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length246

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009548 ID=TCONS_00009548|Name=TCONS_00009548|organism=Clytia hemisphaerica|type=transcript|length=246bp
CACAAAGAGAAATATCGAGGAATTCTCTTTACCAGATTCGGAATATGCTG
ATGACACAGCTGTTTTATTCACATCGCGTGAATCGACTGAAACGTACGTA
CCTCTCATCTTCAATCATTTTAATAGATACGGTCTCGAAATACATGTTGG
CACCGACGAAAAACCCTCCAAATCAGAAATCCTTTTCGTTGCAGCACCAA
AACGCATCTATGCAAATCCTTCTACATACGATGGCTGCAATCTGTC
Run BLAST on NCBI

transcript from alignment at sc0000095:121373..121618

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009548 ID=TCONS_00009548|Name=TCONS_00009548|organism=Clytia hemisphaerica|type=transcript|length=246bp|location=Sequence derived from alignment at sc0000095:121373..121618 (Clytia hemisphaerica)
GACAGATTGCAGCCATCGTATGTAGAAGGATTTGCATAGATGCGTTTTGG
TGCTGCAACGAAAAGGATTTCTGATTTGGAGGGTTTTTCGTCGGTGCCAA
CATGTATTTCGAGACCGTATCTATTAAAATGATTGAAGATGAGAGGTACG
TACGTTTCAGTCGATTCACGCGATGTGAATAAAACAGCTGTGTCATCAGC
ATATTCCGAATCTGGTAAAGAGAATTCCTCGATATTTCTCTTTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005330XLOC_005330Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009548-exon-sc0000095-1491911889:121373..121618TCONS_00009548-exon-sc0000095-1491911889:121373..121618Clytia hemisphaericaexon
TCONS_00009548-exon-sc0000095-1510915933:121373..121618TCONS_00009548-exon-sc0000095-1510915933:121373..121618Clytia hemisphaericaexon
TCONS_00009548-exon-sc0000095-1575043694:121373..121618TCONS_00009548-exon-sc0000095-1575043694:121373..121618Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:121373..121618 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.02754	1.24433	2.7749	4.26089	0	2.61166	2.10057	5.8996	0.265731	0	9.94806	3.51122	5.40552	1.37633	0.805937	1.2813	0	2.4104	7.97335	14.0518	3.1594	2.31157	0.936671	2.94138	3.50839	2.34836	6.8701	12.2876	0.906724	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009548 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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